Published in Nucleic Acids Res on January 01, 2006
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.84
STRING 7--recent developments in the integration and prediction of protein interactions. Nucleic Acids Res (2006) 12.16
Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res (2007) 9.03
The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) (2010) 4.66
Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species. PLoS Genet (2008) 3.69
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci U S A (2007) 3.52
High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing. Proc Natl Acad Sci U S A (2007) 3.25
OriDB: a DNA replication origin database. Nucleic Acids Res (2006) 2.34
Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev (2006) 2.02
New mutant phenotype data curation system in the Saccharomyces Genome Database. Database (Oxford) (2009) 1.95
Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast (2006) 1.85
The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Syst Biol (2008) 1.73
The reference genome sequence of Saccharomyces cerevisiae: then and now. G3 (Bethesda) (2014) 1.68
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol (2007) 1.63
Composite effects of gene determinants on the translation speed and density of ribosomes. Genome Biol (2011) 1.61
Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genet (2014) 1.61
The phosphoproteome of bloodstream form Trypanosoma brucei, causative agent of African sleeping sickness. Mol Cell Proteomics (2009) 1.56
Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol (2007) 1.53
Sequence resources at the Candida Genome Database. Nucleic Acids Res (2006) 1.52
DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Res (2009) 1.41
Cross-kingdom patterns of alternative splicing and splice recognition. Genome Biol (2008) 1.36
Interactions of the yeast SF3b splicing factor. Mol Cell Biol (2005) 1.07
The Bud14p-Glc7p complex functions as a cortical regulator of dynein in budding yeast. EMBO J (2005) 1.07
Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling. Mol Genet Genomics (2010) 1.07
Aspergillus genomes and the Aspergillus cloud. Nucleic Acids Res (2008) 1.05
Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation. BMC Genomics (2006) 1.02
Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae. Mol Cell Biol (2005) 0.99
Cluster analysis of protein array results via similarity of Gene Ontology annotation. BMC Bioinformatics (2006) 0.98
Organelle DB: an updated resource of eukaryotic protein localization and function. Nucleic Acids Res (2006) 0.97
Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae. Microbiology (2007) 0.94
Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing. BMC Genomics (2012) 0.93
Cellular processes and pathways that protect Saccharomyces cerevisiae cells against the plasma membrane-perturbing compound chitosan. Eukaryot Cell (2007) 0.92
The actinome of Dictyostelium discoideum in comparison to actins and actin-related proteins from other organisms. PLoS One (2008) 0.92
Saccharomyces cerevisiae as a model organism: a comparative study. PLoS One (2011) 0.91
Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study. BMC Genomics (2008) 0.90
SPIDer: Saccharomyces protein-protein interaction database. BMC Bioinformatics (2006) 0.90
Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. BMC Genomics (2006) 0.88
The mitochondrial RNA landscape of Saccharomyces cerevisiae. PLoS One (2013) 0.88
Inferential modeling of 3D chromatin structure. Nucleic Acids Res (2015) 0.87
Inferring the role of transcription factors in regulatory networks. BMC Bioinformatics (2008) 0.86
Evolutionary origins of human apoptosis and genome-stability gene networks. Nucleic Acids Res (2008) 0.83
Evolutionary plasticity determination by orthologous groups distribution. Biol Direct (2011) 0.82
Predicting and validating protein interactions using network structure. PLoS Comput Biol (2008) 0.81
Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs. BMC Evol Biol (2011) 0.80
The metabolome 18 years on: a concept comes of age. Metabolomics (2016) 0.79
Extracting regulatory modules from gene expression data by sequential pattern mining. BMC Genomics (2011) 0.79
Wine genomics. Microb Biotechnol (2008) 0.79
Splicing-related features of introns serve to propel evolution. PLoS One (2013) 0.78
Re-annotation of protein-coding genes in the genome of saccharomyces cerevisiae based on support vector machines. PLoS One (2013) 0.77
Role of Ectopic Gene Conversion in the Evolution of a Candida krusei Pleiotropic Drug Resistance Transporter Family. Genetics (2017) 0.75
DNA signals at isoform promoters. Sci Rep (2016) 0.75
Inferring homologous protein-protein interactions through pair position specific scoring matrix. BMC Bioinformatics (2013) 0.75
RAIN: RNA-protein Association and Interaction Networks. Database (Oxford) (2017) 0.75
Genome-wide analysis of transcription factor binding sites and their characteristic DNA structures. BMC Genomics (2015) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Life with 6000 genes. Science (1996) 41.51
Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature (2003) 29.16
Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science (2003) 16.49
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res (2002) 10.65
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol (2003) 3.03
Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited. FEBS Lett (2000) 2.14
Parallel identification of new genes in Saccharomyces cerevisiae. Genome Res (2002) 1.89
Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A (2003) 34.68
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics (2004) 20.23
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Mol Biol Cell (2002) 17.32
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet (2003) 14.56
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci U S A (2002) 12.68
The BioGRID Interaction Database: 2008 update. Nucleic Acids Res (2007) 11.83
Annotation of functional variation in personal genomes using RegulomeDB. Genome Res (2012) 11.47
Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci U S A (2004) 10.99
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res (2002) 10.65
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Res (2003) 10.28
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res (2004) 10.18
Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. PLoS Biol (2004) 9.38
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res (2009) 9.14
Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res (2007) 9.03
Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res (2011) 8.57
The BioGRID Interaction Database: 2011 update. Nucleic Acids Res (2010) 8.46
Introductory science and mathematics education for 21st-Century biologists. Science (2004) 7.69
Molecular characterisation of soft tissue tumours: a gene expression study. Lancet (2002) 7.05
Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc Natl Acad Sci U S A (2002) 6.98
Gene expression patterns in human liver cancers. Mol Biol Cell (2002) 6.93
Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. N Engl J Med (2004) 6.91
Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme. Proc Natl Acad Sci U S A (2005) 6.54
The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res (2003) 6.31
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci U S A (2003) 6.19
The BioGRID interaction database: 2013 update. Nucleic Acids Res (2012) 6.09
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90
Factors influencing the pharmacy faculty workforce. Am J Pharm Educ (2008) 5.77
Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Res (2003) 5.69