Published in J Mol Biol on December 21, 2005
The influence of monovalent cation size on the stability of RNA tertiary structures. J Mol Biol (2009) 1.24
Physics-based de novo prediction of RNA 3D structures. J Phys Chem B (2011) 1.21
Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell. Nucleic Acids Res (2006) 1.08
Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing-duplex structural transition. Nucleic Acids Res (2007) 1.06
Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1. J Mol Biol (2006) 1.03
Site-specific variations in RNA folding thermodynamics visualized by 2-aminopurine fluorescence. Biochemistry (2007) 1.02
Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics. Biophys J (2007) 1.00
Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein. J Mol Biol (2007) 0.97
Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion. Nucleic Acids Res (2007) 0.95
Use of RNA structure flexibility data in nanostructure modeling. Methods (2010) 0.94
Fluorescent HIV-1 Dimerization Initiation Site: design, properties, and use for ligand discovery. J Am Chem Soc (2007) 0.92
Mechanistic studies of hairpin to duplex conversion for trinucleotide repeat sequences. J Biol Chem (2010) 0.89
Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding. Nucleic Acids Res (2007) 0.89
Mechanical unfolding of two DIS RNA kissing complexes from HIV-1. J Mol Biol (2009) 0.86
Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1. Biopolymers (2009) 0.86
2'-Methylseleno-modified oligoribonucleotides for X-ray crystallography synthesized by the ACE RNA solid-phase approach. Nucleic Acids Res (2007) 0.85
Local RNA conformational dynamics revealed by 2-aminopurine solvent accessibility. Biochemistry (2008) 0.85
Endogenous polyamine function--the RNA perspective. Nucleic Acids Res (2014) 0.84
Mechanism of enhanced mechanical stability of a minimal RNA kissing complex elucidated by nonequilibrium molecular dynamics simulations. Proc Natl Acad Sci U S A (2012) 0.82
Influence of C-5 halogenation of uridines on hairpin versus duplex RNA folding. RNA (2007) 0.80
Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site. Nucleic Acids Res (2010) 0.76
HIV-1 DIS stem loop forms an obligatory bent kissing intermediate in the dimerization pathway. Nucleic Acids Res (2014) 0.76
Identification of antisense RNA stem-loops that inhibit RNA-protein interactions using a bacterial reporter system. Nucleic Acids Res (2010) 0.75
Twins, quadruplexes, and more: functional aspects of native and engineered RNA self-assembly in vivo. Front Life Sci (2013) 0.75
Physics-based all-atom modeling of RNA energetics and structure. Wiley Interdiscip Rev RNA (2017) 0.75
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models. Proc Natl Acad Sci U S A (2004) 2.09
A crystallographic study of the binding of 13 metal ions to two related RNA duplexes. Nucleic Acids Res (2003) 1.36
Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases. J Mol Biol (2004) 1.22
Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell. Nucleic Acids Res (2006) 1.08
Mechanism of hairpin-duplex conversion for the HIV-1 dimerization initiation site. J Biol Chem (2005) 1.05
kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry. J Am Chem Soc (2011) 1.02
HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics. J Biol Chem (2002) 0.98
FTIR study of polycaprolactone chain organization at interfaces. J Colloid Interface Sci (2004) 0.96
Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion. Nucleic Acids Res (2007) 0.95
RNA and DNA binding properties of HIV-1 Vif protein: a fluorescence study. J Biol Chem (2007) 0.94
A fast selenium derivatization strategy for crystallization and phasing of RNA structures. RNA (2009) 0.91
Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site. Angew Chem Int Ed Engl (2008) 0.88
Leptospirosis in free-ranging endangered European mink (Mustela lutreola) and other small carnivores (Mustelidae, Viverridae) from southwestern France. J Wildl Dis (2010) 0.88
Thermodynamics of HIV-1 reverse transcriptase in action elucidates the mechanism of action of non-nucleoside inhibitors. J Am Chem Soc (2013) 0.86
Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex. RNA (2002) 0.86
A structure-based approach for targeting the HIV-1 genomic RNA dimerization initiation site. Biochimie (2007) 0.85
Crystal structure of HIV-1 reverse transcriptase bound to a non-nucleoside inhibitor with a novel mechanism of action. Angew Chem Int Ed Engl (2010) 0.85
Discovery of chiral cyclopropyl dihydro-alkylthio-benzyl-oxopyrimidine (S-DABO) derivatives as potent HIV-1 reverse transcriptase inhibitors with high activity against clinically relevant mutants. J Med Chem (2009) 0.82
Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J Med Chem (2011) 0.81
Molecular mimicry in translational regulation: the case of ribosomal protein S15. RNA Biol (2004) 0.80
Influence of C-5 halogenation of uridines on hairpin versus duplex RNA folding. RNA (2007) 0.80
Synthesis of a neamine dimer targeting the dimerization initiation site of HIV-1 RNA. Org Lett (2007) 0.79
Structure-guided discovery of a novel aminoglycoside conjugate targeting HIV-1 RNA viral genome. ACS Chem Biol (2013) 0.77
SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein. Biochimie (2009) 0.77
Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site. Nucleic Acids Res (2010) 0.76
Sequence and structure requirements for specific recognition of HIV-1 TAR and DIS RNA by the HIV-1 Vif protein. RNA Biol (2012) 0.76
Isothermal Titration Calorimetry: Assisted Crystallization of RNA-Ligand Complexes. Methods Mol Biol (2016) 0.75
Conductance fluctuations in gold point contacts: an atomistic picture. Nanotechnology (2012) 0.75
Are conductance plateaus independent events in atomic point contact measurements? A statistical approach. Nanotechnology (2008) 0.75