Islands of tractability for parsimony haplotyping.

The genome of the sea urchin Strongylocentrotus purpuratus. Science (2006) 6.41

Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Brief Bioinform (2002) 2.03

Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. J Comput Biol (2005) 2.02

Gene and alternative splicing annotation with AIR. Genome Res (2005) 1.55

The transcriptome of the sea urchin embryo. Science (2006) 1.42

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res (2005) 1.40

Robustness of inference of haplotype block structure. J Comput Biol (2003) 1.38

HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data. J Comput Biol (2012) 1.31

Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies. Genome Res (2004) 1.28

Finding anchors for genomic sequence comparison. J Comput Biol (2005) 1.25

1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap. J Comput Biol (2004) 1.23

Functional cis-regulatory genomics for systems biology. Proc Natl Acad Sci U S A (2010) 1.09

Optimal selection of SNP markers for disease association studies. Hum Hered (2004) 1.07

dbPTB: a database for preterm birth. Database (Oxford) (2012) 1.05

Haplotype assembly in polyploid genomes and identical by descent shared tracts. Bioinformatics (2013) 1.05

Pathway-based genetic analysis of preterm birth. Genomics (2013) 1.00

QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. In Silico Biol (2012) 0.98

Intellectual disability is associated with increased runs of homozygosity in simplex autism. Am J Hum Genet (2013) 0.96

Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants. Pac Symp Biocomput (2011) 0.93

The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS. J Comput Biol (2011) 0.89

Epitope prediction algorithms for peptide-based vaccine design. Proc IEEE Comput Soc Bioinform Conf (2003) 0.89

Pathway-based analysis of genomic variation data. Curr Opin Genet Dev (2013) 0.87

Islands of tractability for parsimony haplotyping. IEEE/ACM Trans Comput Biol Bioinform (2006) 0.80

Global analysis of sequence diversity within HIV-1 subtypes across geographic regions. Future Virol (2012) 0.78

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinformatics (2012) 0.75

Tumor haplotype assembly algorithms for cancer genomics. Pac Symp Biocomput (2014) 0.75

The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy. J Comput Biol (2010) 0.75