Published in Acta Crystallogr Sect F Struct Biol Cryst Commun on June 30, 2005
Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis. J Struct Funct Genomics (2009) 0.81
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr (1998) 169.28
Solvent content of protein crystals. J Mol Biol (1968) 106.07
SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol (1995) 74.88
Automated MAD and MIR structure solution. Acta Crystallogr D Biol Crystallogr (1999) 41.65
Touring protein fold space with Dali/FSSP. Nucleic Acids Res (1998) 18.00
XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. J Struct Biol (1999) 17.84
Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell (1997) 7.35
Reciprocal-space solvent flattening. Acta Crystallogr D Biol Crystallogr (1999) 5.70
Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. DNA Res (2001) 2.99
MATRAS: A program for protein 3D structure comparison. Nucleic Acids Res (2003) 2.29
Assessment of the ability to model proteins with leucine-rich repeats in light of the latest structural information. Protein Sci (2002) 1.39
Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family. EMBO J (2001) 1.31
Crystal structure of Escherichia coli HdeA. Nat Struct Biol (1998) 1.25
The 1.8 A crystal structure of the ycaC gene product from Escherichia coli reveals an octameric hydrolase of unknown specificity. Structure (1998) 1.11
Dye-linked D-proline dehydrogenase from hyperthermophilic archaeon Pyrobaculum islandicum is a novel FAD-dependent amino acid dehydrogenase. J Biol Chem (2002) 1.04
A leucine-rich repeat variant with a novel repetitive protein structural motif. Nat Struct Biol (1996) 0.89
Crystal structure of a conserved hypothetical protein from Escherichia coli. J Struct Funct Genomics (2002) 0.89
Circular chromosomal DNA in the sulfur-dependent archaebacterium Sulfolobus acidocaldarius. Nucleic Acids Res (1990) 0.83
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci (2006) 2.29
Impaired autophagic flux mediates acinar cell vacuole formation and trypsinogen activation in rodent models of acute pancreatitis. J Clin Invest (2009) 2.06
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics (2004) 1.96
Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer. J Biol Chem (2004) 1.89
An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr D Biol Crystallogr (2002) 1.72
Structural basis of the influenza A virus RNA polymerase PB2 RNA-binding domain containing the pathogenicity-determinant lysine 627 residue. J Biol Chem (2009) 1.70
Crystal structure of elongation factor P from Thermus thermophilus HB8. Proc Natl Acad Sci U S A (2004) 1.65
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography. Structure (2009) 1.64
Involvement of cathepsins in the invasion, metastasis and proliferation of cancer cells. J Med Invest (2005) 1.55
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc Natl Acad Sci U S A (2007) 1.52
Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol (2009) 1.50
Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology. Nat Methods (2007) 1.48
Cathepsin L activity controls adipogenesis and glucose tolerance. Nat Cell Biol (2007) 1.46
IL-6-STAT3 controls intracellular MHC class II alphabeta dimer level through cathepsin S activity in dendritic cells. Immunity (2005) 1.32
Structural basis of actin recognition and arginine ADP-ribosylation by Clostridium perfringens iota-toxin. Proc Natl Acad Sci U S A (2008) 1.31
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis. Acta Crystallogr D Biol Crystallogr (2007) 1.29
Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes. J Biol Chem (2003) 1.28
Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP. J Biochem (2004) 1.27
Crystal structure and site-directed mutagenesis of enzymatic components from Clostridium perfringens iota-toxin. J Mol Biol (2003) 1.25
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. J Mol Biol (2003) 1.18
Structural basis of the sphingomyelin phosphodiesterase activity in neutral sphingomyelinase from Bacillus cereus. J Biol Chem (2006) 1.18
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol (2007) 1.17
Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8. Microbiology (2010) 1.17
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus. FEBS Lett (2003) 1.14
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2002) 1.13
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2003) 1.12
Crystal structure of a novel FAD-, FMN-, and ATP-containing L-proline dehydrogenase complex from Pyrococcus horikoshii. J Biol Chem (2005) 1.11
Structure of RecJ exonuclease defines its specificity for single-stranded DNA. J Biol Chem (2010) 1.11
Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8. J Struct Funct Genomics (2005) 1.11
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins (2008) 1.10
Identification and characterization of tRNA (Gm18) methyltransferase from Thermus thermophilus HB8: domain structure and conserved amino acid sequence motifs. Genes Cells (2002) 1.10
A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI. J Mol Biol (2005) 1.10
Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J Struct Biol (2005) 1.10
Cathepsin S inhibitor prevents autoantigen presentation and autoimmunity. J Clin Invest (2002) 1.09
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8. Protein Sci (2003) 1.09
Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD. Protein Sci (2006) 1.08
Gene and primary structures of dye-linked L-proline dehydrogenase from the hyperthermophilic archaeon Thermococcus profundus show the presence of a novel heterotetrameric amino acid dehydrogenase complex. Extremophiles (2003) 1.08
Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 chitinase A1. J Biol Chem (2001) 1.06
Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus. Proteins (2004) 1.06
A second novel dye-linked L-proline dehydrogenase complex is present in the hyperthermophilic archaeon Pyrococcus horikoshii OT-3. FEBS J (2005) 1.05
Dye-linked D-proline dehydrogenase from hyperthermophilic archaeon Pyrobaculum islandicum is a novel FAD-dependent amino acid dehydrogenase. J Biol Chem (2002) 1.04
A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Gene (2002) 1.04
Structural basis of D-DOPA oxidation by D-amino acid oxidase: alternative pathway for dopamine biosynthesis. Biochem Biophys Res Commun (2007) 1.04
Retinal pigment epithelium-derived CTLA-2alpha induces TGFbeta-producing T regulatory cells. J Immunol (2008) 1.03
Crystal structure of human D-amino acid oxidase: context-dependent variability of the backbone conformation of the VAAGL hydrophobic stretch located at the si-face of the flavin ring. Protein Sci (2006) 1.03
Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex. Proc Natl Acad Sci U S A (2013) 1.03
ADP-dependent glucokinase/phosphofructokinase, a novel bifunctional enzyme from the hyperthermophilic archaeon Methanococcus jannaschii. J Biol Chem (2002) 1.03
Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus. J Proteome Res (2013) 1.02
X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8. Proteins (2009) 1.02
Novel types of two-domain multi-copper oxidases: possible missing links in the evolution. FEBS Lett (2003) 1.01
Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8. J Mol Biol (2004) 1.01
Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. J Biol Chem (2004) 1.01
Crystal structures of tyrosyl-tRNA synthetases from Archaea. J Mol Biol (2005) 1.00
Processing of human cathepsin D is independent of its catalytic function and auto-activation: involvement of cathepsins L and B. J Biochem (2006) 1.00
Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative. J Biochem (2005) 0.99
Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator. Mol Microbiol (2008) 0.99
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL. J Biol Chem (2008) 0.99
Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. J Biol Chem (2003) 0.98
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase. Proc Natl Acad Sci U S A (2006) 0.98
TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology (2011) 0.97
Interaction analysis between tmRNA and SmpB from Thermus thermophilus. J Biochem (2005) 0.97
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J Nucleic Acids (2010) 0.96
HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures. Nucleic Acids Res (2008) 0.96
Double-stranded DNA binding, an unusual property of DNA polymerase epsilon, promotes epigenetic silencing in Saccharomyces cerevisiae. J Biol Chem (2006) 0.96
Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain. Nucleic Acids Res (2007) 0.96
Cathepsin L is crucial for a Th1-type immune response during Leishmania major infection. Microbes Infect (2004) 0.96
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity. Nucleic Acids Res (2009) 0.96
Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus. J Mol Biol (2004) 0.96
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii. RNA Biol (2008) 0.95
Electrostatic potential of nucleotide-free protein is sufficient for discrimination between adenine and guanine-specific binding sites. J Mol Biol (2004) 0.95
Clostridium perfringens iota-toxin, ADP-ribosyltransferase: structure and mechanism of action. Adv Enzyme Regul (2003) 0.95
Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia. EMBO J (2005) 0.95
The first crystal structure of hyperthermostable NAD-dependent glutamate dehydrogenase from Pyrobaculum islandicum. J Mol Biol (2005) 0.95
Role of RecJ-like protein with 5'-3' exonuclease activity in oligo(deoxy)nucleotide degradation. J Biol Chem (2010) 0.95
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein. J Biochem (2008) 0.94
Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii. Acta Crystallogr D Biol Crystallogr (2008) 0.94
Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions. Acta Crystallogr D Biol Crystallogr (2009) 0.94
Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus. J Biol Chem (2009) 0.94
Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27. J Biol Chem (2005) 0.94
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi). J Biol Chem (2003) 0.94
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7. Proteins (2008) 0.93
Genetic and pharmacologic alteration of cathepsin expression influences reovirus pathogenesis. J Virol (2009) 0.93
The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue. FEBS J (2011) 0.93
Clostridium perfringens iota-toxin: structure and function. Toxins (Basel) (2009) 0.93
Functional reconstitution of a crenarchaeal splicing endonuclease in vitro. Biochem Biophys Res Commun (2005) 0.93
CD4-independent human immunodeficiency virus infection involves participation of endocytosis and cathepsin B. PLoS One (2011) 0.93
Unique sugar metabolism and novel enzymes of hyperthermophilic archaea. Chem Rec (2004) 0.93