Published in Protein Pept Lett on October 01, 2005
Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data. Bioinformatics (2010) 1.65
Predicting protein interaction sites from residue spatial sequence profile and evolution rate. FEBS Lett (2005) 1.49
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility. BMC Bioinformatics (2010) 1.44
Tumor clustering using nonnegative matrix factorization with gene selection. IEEE Trans Inf Technol Biomed (2009) 1.23
Metasample-based sparse representation for tumor classification. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.23
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinformatics (2010) 1.21
Predicting protein-protein interactions from protein sequences using meta predictor. Amino Acids (2010) 1.16
Molecular pattern discovery based on penalized matrix decomposition. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.15
Robust classification method of tumor subtype by using correlation filters. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.15
Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset. Amino Acids (2009) 1.10
Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept Lett (2010) 1.10
Assessing and predicting protein interactions by combining manifold embedding with multiple information integration. BMC Bioinformatics (2012) 1.04
Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme. J Comput Aided Mol Des (2005) 0.95
A novel approach to extracting features from motif content and protein composition for protein sequence classification. Neural Netw (2005) 0.93
Gene expression data classification using consensus independent component analysis. Genomics Proteomics Bioinformatics (2008) 0.92
Completed local binary count for rotation invariant texture classification. IEEE Trans Image Process (2012) 0.92
Prediction of protein B-factors using multi-class bounded SVM. Protein Pept Lett (2007) 0.90
Inferring protein-protein interacting sites using residue conservation and evolutionary information. Protein Pept Lett (2006) 0.89
A new constrained independent component analysis method. IEEE Trans Neural Netw (2007) 0.88
A gene selection algorithm based on the gene regulation probability using maximal likelihood estimation. Biotechnol Lett (2005) 0.88
Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction. Comput Biol Med (2009) 0.88
Gene expression data classification using locally linear discriminant embedding. Comput Biol Med (2010) 0.87
Cancer classification using Rotation Forest. Comput Biol Med (2008) 0.86
Predicting contact map using radial basis function neural network with conformational energy function. Int J Bioinform Res Appl (2008) 0.85
An algorithm for finding functional modules and protein complexes in protein-protein interaction networks. J Biomed Biotechnol (2008) 0.85
t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks. PLoS One (2013) 0.84
Predicting key long-range interaction sites by B-factors. Protein Pept Lett (2008) 0.84
Graphical representation for DNA sequences via joint diagonalization of matrix pencil. IEEE J Biomed Health Inform (2013) 0.83
Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.83
ChIP-PIT: Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.82
Prediction of protein-protein interactions based on protein-protein correlation using least squares regression. Curr Protein Pept Sci (2014) 0.82
Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores. Int J Biol Macromol (2006) 0.81
A method of tumor classification based on wavelet packet transforms and neighborhood rough set. Comput Biol Med (2010) 0.81
Prediction of protein secondary structure using improved two-level neural network architecture. Protein Pept Lett (2005) 0.81
A hybrid forward algorithm for RBF neural network construction. IEEE Trans Neural Netw (2006) 0.80
A protein interaction network analysis for yeast integral membrane protein. Protein Pept Lett (2008) 0.79
MISEP method for postnonlinear blind source separation. Neural Comput (2007) 0.78
A novel hybrid GA/RBFNN technique for protein sequences classification. Protein Pept Lett (2005) 0.78
Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. BMC Bioinformatics (2009) 0.78
Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks. BMC Genomics (2015) 0.77
A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks. IEEE Trans Nanobioscience (2015) 0.77
The forecast of the postoperative survival time of patients suffered from non-small cell lung cancer based on PCA and extreme learning machine. Int J Neural Syst (2006) 0.77
A new strategy for protein interface identification using manifold learning method. IEEE Trans Nanobioscience (2014) 0.77
Inter-residue spatial distance map prediction by using integrating GA with RBFNN. Protein Pept Lett (2004) 0.76
PPISEARCHENGINE: gene ontology-based search for protein-protein interactions. Comput Methods Biomech Biomed Engin (2012) 0.76
Introduction: Advanced intelligent computing theories and their applications in bioinformatics. BMC Bioinformatics (2012) 0.75
A batch rival penalized expectation-maximization algorithm for Gaussian mixture clustering with automatic model selection. Comput Math Methods Med (2012) 0.75
PNImodeler: web server for inferring protein-binding nucleotides from sequence data. BMC Genomics (2015) 0.75
DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC). IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
A Gene Selection Method for Microarray Data Based on Binary PSO Encoding Gene-to-Class Sensitivity Information. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Fast modular network implementation for support vector machines. IEEE Trans Neural Netw (2005) 0.75
Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Selecting salient objects in real scenes: an oscillatory correlation model. Neural Netw (2010) 0.75
PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-scale Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Non-linear cancer classification using a modified radial basis function classification algorithm. J Biomed Sci (2005) 0.75
Optimization of Gene Set Annotations using Robust Trace-Norm Multitask Learning. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Rival-model penalized self-organizing map. IEEE Trans Neural Netw (2007) 0.75
Network analysis of the protein chain tertiary structures of heterocomplexes. Protein Pept Lett (2006) 0.75
Special issue on intelligent computing in protein science. Protein Pept Lett (2010) 0.75
Nonconvex Penalty Based Low-rank Representation and Sparse Regression for eQTL Mapping. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Extracting mode components in laser intensity distribution by independent component analysis. Appl Opt (2005) 0.75
Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding. IEEE Trans Nanobioscience (2016) 0.75
Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Feature Selection and Kernel Learning for Local Learning-Based Clustering. IEEE Trans Pattern Anal Mach Intell (2010) 0.75
An integrated strategy for functional analysis of microbial communities based on gene ontology and 16S rRNA gene. Int J Data Min Bioinform (2015) 0.75
Mutli-features Predction of Protein Translational Modification Sites. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Intelligent computing techniques to solve problems in protein bioinformatics. Editorial. Protein Pept Lett (2008) 0.75
Capsule Network for Predicting RNA-Protein Binding Preferences Using Hybrid Feature. IEEE/ACM Trans Comput Biol Bioinform (2019) 0.75
Special section on the 2013 IEEE Conference on Bioinformatics and Biomedicine (BIBM). IEEE Trans Nanobioscience (2014) 0.75
LMMO: A Large Margin Approach for Refining Regulatory Motifs. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Random Walk-Based Solution to Triple Level Stochastic Point Location Problem. IEEE Trans Cybern (2015) 0.75
Attractability and location of equilibrium point of cellular neural networks with time-varying delays. Int J Neural Syst (2004) 0.75
Antinoise approximation of the lidar signal with wavelet neural networks. Appl Opt (2005) 0.75