Published in Amino Acids on April 13, 2010
Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis. BMC Bioinformatics (2013) 1.26
An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis. BMC Bioinformatics (2013) 0.99
Predicting protein-protein interactions from primary protein sequences using a novel multi-scale local feature representation scheme and the random forest. PLoS One (2015) 0.98
Prediction of protein-protein interactions between viruses and human by an SVM model. BMC Bioinformatics (2012) 0.89
Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation. BMC Syst Biol (2015) 0.86
Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set. BMC Bioinformatics (2014) 0.84
ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval. BMC Bioinformatics (2012) 0.84
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinformatics (2012) 0.84
Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity. BMC Bioinformatics (2012) 0.83
Prediction of heme binding residues from protein sequences with integrative sequence profiles. Proteome Sci (2012) 0.78
An Ensemble Method to Distinguish Bacteriophage Virion from Non-Virion Proteins Based on Protein Sequence Characteristics. Int J Mol Sci (2015) 0.76
Protein complex discovery by interaction filtering from protein interaction networks using mutual rank coexpression and sequence similarity. Biomed Res Int (2015) 0.75
Integrated Strategy Improves the Prediction Accuracy of miRNA in Large Dataset. PLoS One (2016) 0.75
Prediction of protein-protein interaction strength using domain features with supervised regression. ScientificWorldJournal (2014) 0.75
Integrating semantic information into multiple kernels for protein-protein interaction extraction from biomedical literatures. PLoS One (2014) 0.75
Protein localization prediction using random walks on graphs. BMC Bioinformatics (2013) 0.75
PSFM-DBT: Identifying DNA-Binding Proteins by Combing Position Specific Frequency Matrix and Distance-Bigram Transformation. Int J Mol Sci (2017) 0.75
Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data. Bioinformatics (2010) 1.65
Predicting protein interaction sites from residue spatial sequence profile and evolution rate. FEBS Lett (2005) 1.49
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinformatics (2011) 1.45
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility. BMC Bioinformatics (2010) 1.44
Tumor clustering using nonnegative matrix factorization with gene selection. IEEE Trans Inf Technol Biomed (2009) 1.23
Metasample-based sparse representation for tumor classification. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.23
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinformatics (2010) 1.21
Molecular pattern discovery based on penalized matrix decomposition. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.15
Robust classification method of tumor subtype by using correlation filters. IEEE/ACM Trans Comput Biol Bioinform (2011) 1.15
A systems biology approach to identify effective cocktail drugs. BMC Syst Biol (2010) 1.11
Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept Lett (2010) 1.10
Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset. Amino Acids (2009) 1.10
Identifying dysregulated pathways in cancers from pathway interaction networks. BMC Bioinformatics (2012) 1.09
Drug discovery in the age of systems biology: the rise of computational approaches for data integration. Curr Opin Biotechnol (2011) 1.07
Identifying disease genes and module biomarkers by differential interactions. J Am Med Inform Assoc (2011) 1.07
Assessing and predicting protein interactions by combining manifold embedding with multiple information integration. BMC Bioinformatics (2012) 1.04
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis. Plant Physiol (2010) 1.02
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference. Bioinformatics (2012) 1.01
Human monogenic disease genes have frequently functionally redundant paralogs. PLoS Comput Biol (2013) 0.97
Detecting early-warning signals of type 1 diabetes and its leading biomolecular networks by dynamical network biomarkers. BMC Med Genomics (2013) 0.96
Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme. J Comput Aided Mol Des (2005) 0.95
A network approach to predict pathogenic genes for Fusarium graminearum. PLoS One (2010) 0.94
A novel approach to extracting features from motif content and protein composition for protein sequence classification. Neural Netw (2005) 0.93
FunSAV: predicting the functional effect of single amino acid variants using a two-stage random forest model. PLoS One (2012) 0.92
Gene expression data classification using consensus independent component analysis. Genomics Proteomics Bioinformatics (2008) 0.92
Completed local binary count for rotation invariant texture classification. IEEE Trans Image Process (2012) 0.92
Exploring drug combinations in genetic interaction network. BMC Bioinformatics (2012) 0.91
Prediction of protein B-factors using multi-class bounded SVM. Protein Pept Lett (2007) 0.90
Inferring protein-protein interacting sites using residue conservation and evolutionary information. Protein Pept Lett (2006) 0.89
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets. Bioinformatics (2013) 0.89
A gene selection algorithm based on the gene regulation probability using maximal likelihood estimation. Biotechnol Lett (2005) 0.88
Prediction of S-glutathionylation sites based on protein sequences. PLoS One (2013) 0.88
A new constrained independent component analysis method. IEEE Trans Neural Netw (2007) 0.88
The drug cocktail network. BMC Syst Biol (2012) 0.88
Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction. Comput Biol Med (2009) 0.88
Gene expression data classification using locally linear discriminant embedding. Comput Biol Med (2010) 0.87
Cancer classification using Rotation Forest. Comput Biol Med (2008) 0.86
Predicting contact map using radial basis function neural network with conformational energy function. Int J Bioinform Res Appl (2008) 0.85
DIPOS: database of interacting proteins in Oryza sativa. Mol Biosyst (2011) 0.85
An algorithm for finding functional modules and protein complexes in protein-protein interaction networks. J Biomed Biotechnol (2008) 0.85
Predicting key long-range interaction sites by B-factors. Protein Pept Lett (2008) 0.84
t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks. PLoS One (2013) 0.84
Graphical representation for DNA sequences via joint diagonalization of matrix pencil. IEEE J Biomed Health Inform (2013) 0.83
Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.83
ChIP-PIT: Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.82
Prediction of protein-protein interactions based on protein-protein correlation using least squares regression. Curr Protein Pept Sci (2014) 0.82
Prediction of protein secondary structure using improved two-level neural network architecture. Protein Pept Lett (2005) 0.81
Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores. Int J Biol Macromol (2006) 0.81
Predicting drug targets based on protein domains. Mol Biosyst (2012) 0.81
A method of tumor classification based on wavelet packet transforms and neighborhood rough set. Comput Biol Med (2010) 0.81
A hybrid forward algorithm for RBF neural network construction. IEEE Trans Neural Netw (2006) 0.80
FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures. BMC Syst Biol (2010) 0.80
Prediction of beta-hairpins in proteins using physicochemical properties and structure information. Protein Pept Lett (2010) 0.80
A protein interaction network analysis for yeast integral membrane protein. Protein Pept Lett (2008) 0.79
Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. BMC Bioinformatics (2009) 0.78
MISEP method for postnonlinear blind source separation. Neural Comput (2007) 0.78
A novel hybrid GA/RBFNN technique for protein sequences classification. Protein Pept Lett (2005) 0.78
The forecast of the postoperative survival time of patients suffered from non-small cell lung cancer based on PCA and extreme learning machine. Int J Neural Syst (2006) 0.77
Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks. BMC Genomics (2015) 0.77
A new strategy for protein interface identification using manifold learning method. IEEE Trans Nanobioscience (2014) 0.77
A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks. IEEE Trans Nanobioscience (2015) 0.77
Inter-residue spatial distance map prediction by using integrating GA with RBFNN. Protein Pept Lett (2004) 0.76
eFG: an electronic resource for Fusarium graminearum. Database (Oxford) (2013) 0.76
PPISEARCHENGINE: gene ontology-based search for protein-protein interactions. Comput Methods Biomech Biomed Engin (2012) 0.76
Introduction: Advanced intelligent computing theories and their applications in bioinformatics. BMC Bioinformatics (2012) 0.75
PNImodeler: web server for inferring protein-binding nucleotides from sequence data. BMC Genomics (2015) 0.75
A systems biology approach to identify the signalling network regulated by Rho-GDI-γ during neural stem cell differentiation. Mol Biosyst (2012) 0.75
DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Extracting mode components in laser intensity distribution by independent component analysis. Appl Opt (2005) 0.75
Nonconvex Penalty Based Low-rank Representation and Sparse Regression for eQTL Mapping. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Drug-domain interaction networks in myocardial infarction. IEEE Trans Nanobioscience (2013) 0.75
Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding. IEEE Trans Nanobioscience (2016) 0.75
Attractability and location of equilibrium point of cellular neural networks with time-varying delays. Int J Neural Syst (2004) 0.75
Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
A novel Markov pairwise protein sequence alignment method for sequence comparison. Protein Pept Lett (2005) 0.75
Computational systems biology. ScientificWorldJournal (2013) 0.75
An integrated strategy for functional analysis of microbial communities based on gene ontology and 16S rRNA gene. Int J Data Min Bioinform (2015) 0.75
Capsule Network for Predicting RNA-Protein Binding Preferences Using Hybrid Feature. IEEE/ACM Trans Comput Biol Bioinform (2019) 0.75
LMMO: A Large Margin Approach for Refining Regulatory Motifs. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Antinoise approximation of the lidar signal with wavelet neural networks. Appl Opt (2005) 0.75
Mutli-features Predction of Protein Translational Modification Sites. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Intelligent computing techniques to solve problems in protein bioinformatics. Editorial. Protein Pept Lett (2008) 0.75
Fast modular network implementation for support vector machines. IEEE Trans Neural Netw (2005) 0.75
Special section on the 2013 IEEE Conference on Bioinformatics and Biomedicine (BIBM). IEEE Trans Nanobioscience (2014) 0.75
Selecting salient objects in real scenes: an oscillatory correlation model. Neural Netw (2010) 0.75
Random Walk-Based Solution to Triple Level Stochastic Point Location Problem. IEEE Trans Cybern (2015) 0.75
Improved method for predicting phi-turns in proteins using a two-stage classifier. Protein Pept Lett (2010) 0.75
Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC). IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
A Gene Selection Method for Microarray Data Based on Binary PSO Encoding Gene-to-Class Sensitivity Information. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-scale Data. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Optimization of Gene Set Annotations using Robust Trace-Norm Multitask Learning. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
Non-linear cancer classification using a modified radial basis function classification algorithm. J Biomed Sci (2005) 0.75
Special issue on intelligent computing in protein science. Protein Pept Lett (2010) 0.75
Network analysis of the protein chain tertiary structures of heterocomplexes. Protein Pept Lett (2006) 0.75