Published in FEMS Microbiol Ecol on May 01, 2006
Going back to the roots: the microbial ecology of the rhizosphere. Nat Rev Microbiol (2013) 2.73
Rice root-associated bacteria: insights into community structures across 10 cultivars. FEMS Microbiol Ecol (2011) 1.46
Plant growth-promoting rhizobacteria and root system functioning. Front Plant Sci (2013) 1.46
Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars. Appl Environ Microbiol (2009) 1.40
Unraveling the plant microbiome: looking back and future perspectives. Front Microbiol (2014) 1.23
Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis. Appl Environ Microbiol (2008) 1.04
Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce. Front Microbiol (2014) 0.99
Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae kleb. Appl Environ Microbiol (2005) 0.99
Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities. Front Microbiol (2013) 0.99
A Vavilovian approach to discovering crop-associated microbes with potential to enhance plant immunity. Front Plant Sci (2014) 0.96
Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One (2013) 0.95
Attached bacterial populations shared by four species of aquatic angiosperms. Appl Environ Microbiol (2008) 0.95
Phylogenetically and spatially close marine sponges harbour divergent bacterial communities. PLoS One (2012) 0.88
The influence of different land uses on the structure of archaeal communities in Amazonian anthrosols based on 16S rRNA and amoA genes. Microb Ecol (2010) 0.88
Soil microbial diversity in the vicinity of a Negev Desert shrub--Reaumuria negevensis. Microb Ecol (2010) 0.88
Comparison of effects of compost amendment and of single-strain inoculation on root bacterial communities of young cucumber seedlings. Appl Environ Microbiol (2009) 0.86
Evidence for selective bacterial community structuring in the freshwater sponge Ephydatia fluviatilis. Microb Ecol (2012) 0.84
Soil and cultivar type shape the bacterial community in the potato rhizosphere. Microb Ecol (2011) 0.84
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage. Front Microbiol (2015) 0.83
Root colonization by Pseudomonas sp. DSMZ 13134 and impact on the indigenous rhizosphere bacterial community of barley. Microb Ecol (2010) 0.83
Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities. PeerJ (2015) 0.82
Pyrosequencing reveals contrasting soil bacterial diversity and community structure of two main winter wheat cropping systems in China. Microb Ecol (2013) 0.82
Soil microbial diversity in the vicinity of desert shrubs. Microb Ecol (2012) 0.82
Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere. Front Plant Sci (2016) 0.81
Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific. Front Microbiol (2016) 0.81
Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines. PLoS One (2013) 0.81
Influence of soil type, cultivar and Verticillium dahliae on the structure of the root and rhizosphere soil fungal microbiome of strawberry. PLoS One (2014) 0.81
Different pioneer plant species select specific rhizosphere bacterial communities in a high mountain environment. Springerplus (2014) 0.79
A new bacterial disease on Mandevilla sanderi, caused by Pseudomonas savastanoi: lessons learned for bacterial diversity studies. Appl Environ Microbiol (2012) 0.79
Water-limiting conditions alter the structure and biofilm-forming ability of bacterial multispecies communities in the alfalfa rhizosphere. PLoS One (2013) 0.79
Structure and composition of bacterial and fungal community in soil under soybean monoculture in the Brazilian Cerrado. Braz J Microbiol (2010) 0.79
Safe-site effects on rhizosphere bacterial communities in a high-altitude alpine environment. Biomed Res Int (2014) 0.79
The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity. Front Microbiol (2016) 0.78
Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. MBio (2015) 0.78
The abundance and diversity of soil fungi in continuously monocropped chrysanthemum. ScientificWorldJournal (2013) 0.77
Bacterial community structure in freshwater springs infested with the invasive plant species Hydrilla verticillata. Hydrobiologia (2015) 0.75
The Bacterial Signature of Leptospermum scoparium (Mānuka) Reveals Core and Accessory Communities with Bioactive Properties. PLoS One (2016) 0.75
An affinity-effect relationship for microbial communities in plant-soil feedback loops. Microb Ecol (2014) 0.75
Nitrate and ammonia as nitrogen sources for deep subsurface microorganisms. Front Microbiol (2015) 0.75
The effect of heavy metal contamination on the bacterial community structure at Jiaozhou Bay, China. Braz J Microbiol (2016) 0.75
Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession. Front Plant Sci (2016) 0.75
Identifying the active microbiome associated with roots and rhizosphere soil of oilseed rape. Appl Environ Microbiol (2017) 0.75
A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization. Front Microbiol (2017) 0.75
Spatial heterogeneity of plant-soil feedbacks increases per capita reproductive biomass of species at an establishment disadvantage. Oecologia (2017) 0.75
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol (2009) 4.29
The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nat Rev Microbiol (2009) 3.00
Cellular phones, cordless phones, and the risks of glioma and meningioma (Interphone Study Group, Germany). Am J Epidemiol (2006) 2.38
The INTERPHONE study: design, epidemiological methods, and description of the study population. Eur J Epidemiol (2007) 2.30
Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol (2011) 2.01
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology (2002) 1.97
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Volatiles of bacterial antagonists inhibit mycelial growth of the plant pathogen Rhizoctonia solani. Arch Microbiol (2006) 1.78
Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl Environ Microbiol (2002) 1.69
Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months. Environ Microbiol (2007) 1.60
Species-specific structural and functional diversity of bacterial communities in lichen symbioses. ISME J (2009) 1.57
Desert farming benefits from microbial potential in arid soils and promotes diversity and plant health. PLoS One (2011) 1.56
Medical exposure to ionising radiation and the risk of brain tumours: Interphone study group, Germany. Eur J Cancer (2007) 1.52
Significance test for comparing complex microbial community fingerprints using pairwise similarity measures. J Microbiol Methods (2004) 1.51
Validation of self-reported cellular phone use. J Expo Anal Environ Epidemiol (2004) 1.48
Identification and characterization of an N-acylhomoserine lactone-dependent quorum-sensing system in Pseudomonas putida strain IsoF. Appl Environ Microbiol (2002) 1.40
Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars. Appl Environ Microbiol (2009) 1.40
Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors. Appl Environ Microbiol (2002) 1.38
Plasmids foster diversification and adaptation of bacterial populations in soil. FEMS Microbiol Rev (2012) 1.35
In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol Ecol (2008) 1.34
Bacillus and Streptomyces were selected as broad-spectrum antagonists against soilborne pathogens from arid areas in Egypt. FEMS Microbiol Lett (2013) 1.31
Stenotrophomonas rhizophila sp. nov., a novel plant-associated bacterium with antifungal properties. Int J Syst Evol Microbiol (2002) 1.30
Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids. FEMS Microbiol Ecol (2008) 1.28
Potato-associated bacteria and their antagonistic potential towards plant-pathogenic fungi and the plant-parasitic nematode Meloidogyne incognita (Kofoid & White) Chitwood. Can J Microbiol (2002) 1.27
Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Appl Environ Microbiol (2003) 1.25
Effects of the inoculant strain Pseudomonas putida KT2442 (pNF142) and of naphthalene contamination on the soil bacterial community. FEMS Microbiol Ecol (2005) 1.24
Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities. Can J Microbiol (2004) 1.23
Sam50 functions in mitochondrial intermembrane space bridging and biogenesis of respiratory complexes. Mol Cell Biol (2012) 1.22
Quorum-sensing effects in the antagonistic rhizosphere bacterium Serratia plymuthica HRO-C48. FEMS Microbiol Ecol (2009) 1.21
Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol (2008) 1.21
PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa. FEMS Microbiol Ecol (2011) 1.20
Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community. FEMS Microbiol Ecol (2000) 1.19
The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site. FEMS Microbiol Ecol (2006) 1.16
The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing. Sci Rep (2013) 1.16
IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes. Front Microbiol (2012) 1.16
Exploring the diversity of bacterial communities in sediments of urban mangrove forests. FEMS Microbiol Ecol (2008) 1.15
Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. Environ Microbiol (2007) 1.14
Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants. Environ Microbiol (2006) 1.14
Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manure. Res Microbiol (2009) 1.13
Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors. ISME J (2008) 1.13
Effectiveness of 3 antagonistic bacterial isolates to control Rhizoctonia solani Kühn on lettuce and potato. Can J Microbiol (2005) 1.11
Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle. ISME J (2011) 1.11
Diversity and antagonistic potential of bacteria associated with bryophytes from nutrient-poor habitats of the Baltic Sea Coast. Appl Environ Microbiol (2004) 1.10
Influence of humans on evolution and mobilization of environmental antibiotic resistome. Emerg Infect Dis (2013) 1.10
Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes. Res Microbiol (2009) 1.08
Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil. FEMS Microbiol Ecol (2009) 1.08
Production of volatile metabolites by grape-associated microorganisms. J Agric Food Chem (2010) 1.06
Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex. Environ Microbiol (2009) 1.05
Root-microbe systems: the effect and mode of interaction of Stress Protecting Agent (SPA) Stenotrophomonas rhizophila DSM14405(T.). Front Plant Sci (2013) 1.05
Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing. PLoS One (2012) 1.05
Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods. FEMS Microbiol Ecol (2006) 1.04
Functional and structural microbial diversity in organic and conventional viticulture: organic farming benefits natural biocontrol agents. Appl Environ Microbiol (2011) 1.04
Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS One (2010) 1.04
Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics (2011) 1.04
Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Appl Environ Microbiol (2012) 1.04
Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning. Sci Rep (2013) 1.03
Alterations in soil microbial activity and N-transformation processes due to sulfadiazine loads in pig-manure. Environ Pollut (2007) 1.03
Investigations of the structure and function of bacterial communities associated with Sphagnum mosses. Environ Microbiol (2007) 1.02
Short-term effects of amoxicillin on bacterial communities in manured soil. FEMS Microbiol Ecol (2007) 1.00
In vitro antagonists of Rhizoctonia solani tested on lettuce: rhizosphere competence, biocontrol efficiency and rhizosphere microbial community response. FEMS Microbiol Ecol (2009) 1.00
Diversity of ndo genes in mangrove sediments exposed to different sources of polycyclic aromatic hydrocarbon pollution. Appl Environ Microbiol (2007) 1.00
Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae kleb. Appl Environ Microbiol (2005) 0.99
Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. FEMS Microbiol Ecol (2010) 0.99
Detection of a phage genome carrying a zonula occludens like toxin gene (zot) in clinical isolates of Stenotrophomonas maltophilia. Arch Microbiol (2006) 0.99
Microbial diversity inside pumpkins: microhabitat-specific communities display a high antagonistic potential against phytopathogens. Microb Ecol (2011) 0.99
The bryophyte genus Sphagnum is a reservoir for powerful and extraordinary antagonists and potentially facultative human pathogens. FEMS Microbiol Ecol (2007) 0.98
Similar diversity of alphaproteobacteria and nitrogenase gene amplicons on two related sphagnum mosses. Front Microbiol (2012) 0.97
Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazine. Appl Environ Microbiol (2011) 0.97
A molecular biological protocol to distinguish potentially human pathogenic Stenotrophomonas maltophilia from plant-associated Stenotrophomonas rhizophila. Environ Microbiol (2005) 0.97
Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria. BMC Genomics (2014) 0.96
A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. J Microbiol Methods (2005) 0.96
Prevalence of streptomycin-resistance genes in bacterial populations in European habitats. FEMS Microbiol Ecol (2002) 0.96
Sugar beet-associated bacterial and fungal communities show a high indigenous antagonistic potential against plant pathogens. Microb Ecol (2007) 0.96
Effect of bacterial antagonists on lettuce: active biocontrol of Rhizoctonia solani and negligible, short-term effects on nontarget microorganisms. FEMS Microbiol Ecol (2008) 0.96
Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community. FEMS Microbiol Ecol (2006) 0.96
Histidine residue 94 is involved in pH sensing by histidine kinase ArsS of Helicobacter pylori. PLoS One (2009) 0.96
Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Syst Appl Microbiol (2013) 0.96
Increased abundance and transferability of resistance genes after field application of manure from sulfadiazine-treated pigs. Appl Environ Microbiol (2013) 0.95
Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty. FEMS Microbiol Ecol (2008) 0.95
Quantifying the impact of selection bias caused by nonparticipation in a case-control study of mobile phone use. Ann Epidemiol (2009) 0.95
Quorum-sensing signaling is required for production of the antibiotic pyrrolnitrin in a rhizospheric biocontrol strain of Serratia plymuthica. FEMS Microbiol Lett (2007) 0.95
Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One (2013) 0.95
High specificity but contrasting biodiversity of Sphagnum-associated bacterial and plant communities in bog ecosystems independent of the geographical region. ISME J (2007) 0.94
The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions. Mol Ecol (2014) 0.94