Published in BMC Bioinformatics on April 27, 2006
TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics (2006) 8.78
Treelink: data integration, clustering and visualization of phylogenetic trees. BMC Bioinformatics (2015) 0.84
primetv: a viewer for reconciled trees. BMC Bioinformatics (2007) 0.82
Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. BMC Bioinformatics (2007) 0.78
Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res (2002) 19.40
Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res (1998) 6.45
The closest BLAST hit is often not the nearest neighbor. J Mol Evol (2001) 5.55
Genew: the human gene nomenclature database. Nucleic Acids Res (2002) 5.09
Oct-4: gatekeeper in the beginnings of mammalian development. Stem Cells (2001) 4.63
A phylogenomic approach to microbial evolution. Nucleic Acids Res (2001) 3.06
PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res (2004) 2.26
Visualising very large phylogenetic trees in three dimensional hyperbolic space. BMC Bioinformatics (2004) 2.26
FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics (2005) 1.97
BLASTing proteomes, yielding phylogenies. In Silico Biol (2003) 1.12
Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets. Proteins (2005) 0.93
Minimum conflict: a divide-and-conquer approach to phylogeny estimation. Bioinformatics (2001) 0.86
The Bioperl toolkit: Perl modules for the life sciences. Genome Res (2002) 58.63
Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p. Hum Mol Genet (2007) 4.09
Production of type VI collagen by human macrophages: a new dimension in macrophage functional heterogeneity. J Immunol (2008) 1.45
Unsaturated fatty acids suppress the expression of the ATP-binding cassette transporter G1 (ABCG1) and ABCA1 genes via an LXR/RXR responsive element. Atherosclerosis (2006) 1.33
The PluriNetWork: an electronic representation of the network underlying pluripotency in mouse, and its applications. PLoS One (2010) 1.33
ExprEssence--revealing the essence of differential experimental data in the context of an interaction/regulation net-work. BMC Syst Biol (2010) 1.27
Selection of reliable reference genes during THP-1 monocyte differentiation into macrophages. BMC Mol Biol (2010) 1.23
Lipid droplets gain PAT family proteins by interaction with specialized plasma membrane domains. J Biol Chem (2005) 1.23
A review of bioinformatics education in Germany. Brief Bioinform (2008) 1.16
Butyrophilin controls milk fat globule secretion. Proc Natl Acad Sci U S A (2006) 1.14
Polyunsaturated fatty acids and acetoacetate downregulate the expression of the ATP-binding cassette transporter A1. Diabetes (2002) 1.13
BLASTing proteomes, yielding phylogenies. In Silico Biol (2003) 1.12
Rupture of the atherosclerotic plaque: does a good animal model exist? Arterioscler Thromb Vasc Biol (2003) 1.11
HDL-associated lysosphingolipids inhibit NAD(P)H oxidase-dependent monocyte chemoattractant protein-1 production. Arterioscler Thromb Vasc Biol (2008) 1.11
Efficient non-viral transfection of THP-1 cells. J Immunol Methods (2009) 1.09
Automated scanning for phylogenetically informative transposed elements in rodents. Syst Biol (2006) 1.06
Proteomic analysis of mouse oocytes reveals 28 candidate factors of the "reprogrammome". J Proteome Res (2011) 1.06
Primary cultures of glomerular parietal epithelial cells or podocytes with proven origin. PLoS One (2012) 1.05
Noninvasive imaging of intracellular lipid metabolism in macrophages by Raman microscopy in combination with stable isotopic labeling. Anal Chem (2012) 1.03
TIP47, a lipid cargo protein involved in macrophage triglyceride metabolism. Arterioscler Thromb Vasc Biol (2009) 1.03
Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks. Mol Ecol (2012) 0.99
Phosducin influences sympathetic activity and prevents stress-induced hypertension in humans and mice. J Clin Invest (2009) 0.98
Spatial integration of TIP47 and adipophilin in macrophage lipid bodies. J Biol Chem (2004) 0.97
Cell surface localization of ABCG1 does not require LXR activation. Arterioscler Thromb Vasc Biol (2006) 0.96
Proinflammatory cytokines regulate LOX-1 expression in vascular smooth muscle cells. Arterioscler Thromb Vasc Biol (2004) 0.96
Cografting of hamster (Phodopus sungorus) and marmoset (Callithrix jacchus) testicular tissues into nude mice does not overcome blockade of early spermatogenic differentiation in primate grafts. Biol Reprod (2004) 0.94
Absence of S100A12 in mouse: implications for RAGE-S100A12 interaction. Trends Immunol (2003) 0.93
Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets. Proteins (2005) 0.93
Characterization of the synthetic compatible solute homoectoine as a potent PCR enhancer. Biochem Biophys Res Commun (2004) 0.92
GFP-tagged proteins visualized by freeze-fracture immuno-electron microscopy: a new tool in cellular and molecular medicine. J Cell Mol Med (2008) 0.91
The multikinase inhibitor Sorafenib displays significant antiproliferative effects and induces apoptosis via caspase 3, 7 and PARP in B- and T-lymphoblastic cells. BMC Cancer (2010) 0.91
ADP-ribosylation factor (ARF)-like 7 (ARL7) is induced by cholesterol loading and participates in apolipoprotein AI-dependent cholesterol export. FEBS Lett (2004) 0.91
Differences in embryo quality are associated with differences in oocyte composition: a proteomic study in inbred mice. Proteomics (2015) 0.90
Sex steroids in Sjögren's syndrome. J Autoimmun (2012) 0.87
Epitope predictions indicate the presence of two distinct types of epitope-antibody-reactivities determined by epitope profiling of intravenous immunoglobulins. PLoS One (2013) 0.87
The intrinsic connectome of the rat amygdala. Front Neural Circuits (2012) 0.86
VANLO--interactive visual exploration of aligned biological networks. BMC Bioinformatics (2009) 0.86
PodNet, a protein-protein interaction network of the podocyte. Kidney Int (2013) 0.86
Microfluidically supported biochip design for culture of endothelial cell layers with improved perfusion conditions. Biofabrication (2015) 0.85
Improved protocol for efficient nonviral transfection of premature THP-1 macrophages. Cold Spring Harb Protoc (2011) 0.85
Comparative homology agreement search: an effective combination of homology-search methods. Proc Natl Acad Sci U S A (2004) 0.85
Complexity of fatty acid distribution inside human macrophages on single cell level using Raman micro-spectroscopy. Anal Bioanal Chem (2014) 0.84
VisCoSe: visualization and comparison of consensus sequences. Bioinformatics (2004) 0.84
Cloning, genomic organization, and tissue-specific expression of the RASL11B gene. Biochim Biophys Acta (2007) 0.84
Laminin isoforms in atherosclerotic arteries from mice and man. Histol Histopathol (2011) 0.84
Nuclear reprogramming: kinetics of cell cycle and metabolic progression as determinants of success. PLoS One (2012) 0.84
Inbred mouse strains reveal biomarkers that are pro-longevity, antilongevity or role switching. Aging Cell (2014) 0.82
Learning biomarkers of pluripotent stem cells in mouse. DNA Res (2011) 0.82
Pharmacological regulation of cholesterol efflux in human monocyte-derived macrophages in the absence of exogenous cholesterol acceptors. Atherosclerosis (2005) 0.82
Association of dietary, circulating, and supplement fatty acids with coronary risk. Ann Intern Med (2014) 0.82
Visualization and exploration of conserved regulatory modules using ReXSpecies 2. BMC Evol Biol (2011) 0.81
Laser microdissection-based analysis of mRNA expression in human coronary arteries with intimal thickening. J Histochem Cytochem (2004) 0.81
Relationships between Cargo, Cell Penetrating Peptides and Cell Type for Uptake of Non-Covalent Complexes into Live Cells. Pharmaceuticals (Basel) (2013) 0.80
Expression of perilipin isoforms in cell types involved in atherogenesis. Atherosclerosis (2006) 0.80
The effect of heterotachy in multigene analysis using the neighbor joining method. Mol Phylogenet Evol (2009) 0.80
Transduction of proteins into leishmania tarentolae by formation of non-covalent complexes with cell-penetrating peptides. J Cell Biochem (2014) 0.80
ReXSpecies--a tool for the analysis of the evolution of gene regulation across species. BMC Evol Biol (2008) 0.79
Evidence-Based Guideline of the German Nutrition Society: Fat Intake and Prevention of Selected Nutrition-Related Diseases. Ann Nutr Metab (2015) 0.79
Cloning, cellular localization, genomic organization, and tissue-specific expression of the TGFbeta1-inducible SMAP-5 gene. Gene (2005) 0.78
Ocular fibroblast types differ in their mRNA profiles--implications for fibrosis prevention after aqueous shunt implantation. Mol Vis (2013) 0.77
Biotool2Web: creating simple Web interfaces for bioinformatics applications. Appl Bioinformatics (2006) 0.77
IsoSVM--distinguishing isoforms and paralogs on the protein level. BMC Bioinformatics (2006) 0.77
Tissue-based Alzheimer gene expression markers-comparison of multiple machine learning approaches and investigation of redundancy in small biomarker sets. BMC Bioinformatics (2012) 0.77
Chemical and enzymatic characterization of recombinant rabbit muscle pyruvate kinase. Biol Chem (2013) 0.77
Derivation of an interaction/regulation network describing pluripotency in human. Gene (2012) 0.77
Cholesterol absorption inhibitor Ezetimibe blocks uptake of oxidized LDL in human macrophages. Biochem Biophys Res Commun (2004) 0.77
Genetics and molecular biology: apolipoprotein E--from plasma lipids to plaque stability. Curr Opin Lipidol (2002) 0.76
Evidence for an alternative genomic structure, mRNA and protein sequence of human ABCA13. Gene (2012) 0.76
Identifying genes relevant to specific biological conditions in time course microarray experiments. PLoS One (2013) 0.75
Inflammation in atherosclerosis, not yet time for a paradigm shift? Curr Opin Lipidol (2003) 0.75
Plasmacytoid dendritic cells, Janus-faced sentinels: progesterone, guilty or innocent? Immunotherapy (2009) 0.75
Finding common protein interaction patterns across organisms. Evol Bioinform Online (2007) 0.75
Mitochondrial physiology and gene expression analyses reveal metabolic and translational dysregulation in oocyte-induced somatic nuclear reprogramming. PLoS One (2012) 0.75
Pluripotent stem cells in mice. Stud Health Technol Inform (2012) 0.75
Genetics and molecular biology: peroxisome proliferator-activated receptor gamma still full of surprises. Curr Opin Lipidol (2002) 0.75
Learning new tricks from an old dog: recent findings in familial hypercholesterolemia. Curr Opin Lipidol (2003) 0.75
Systems biology approaches in aging research. Interdiscip Top Gerontol (2014) 0.75
Paper2sequences: retrieval of sequences listed in a publication. Appl Bioinformatics (2003) 0.75
Kallikrein Cleaves C3 and Activates Complement. J Innate Immun (2017) 0.75
Genetics and molecular biology: the ABC of cholesterol efflux and high-density lipoprotein formation. Curr Opin Lipidol (2004) 0.75
Revealing complex function, process and pathway interactions with high-throughput expression and biological annotation data. Mol Biosyst (2016) 0.75