Published in J Biol Chem on May 05, 2006
Structures of human cytochrome P-450 2E1. Insights into the binding of inhibitors and both small molecular weight and fatty acid substrates. J Biol Chem (2008) 1.63
Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Anal Chem (2008) 1.56
xComb: a cross-linked peptide database approach to protein-protein interaction analysis. J Proteome Res (2010) 1.22
Isotope signatures allow identification of chemically cross-linked peptides by mass spectrometry: a novel method to determine interresidue distances in protein structures through cross-linking. J Proteome Res (2010) 1.09
Substrate-modulated cytochrome P450 17A1 and cytochrome b5 interactions revealed by NMR. J Biol Chem (2013) 1.07
Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D. J Mass Spectrom (2010) 1.00
Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5). Biochemistry (2012) 0.95
The action of cytochrome b(5) on CYP2E1 and CYP2C19 activities requires anionic residues D58 and D65. Biochemistry (2012) 0.93
Uncovering the role of hydrophobic residues in cytochrome P450-cytochrome P450 reductase interactions. Biochemistry (2011) 0.87
Cross-linking of human cytochrome P450 2B6 to NADPH-cytochrome P450 reductase: Identification of a potential site of interaction. J Inorg Biochem (2010) 0.86
Catalytically relevant electrostatic interactions of cytochrome P450c17 (CYP17A1) and cytochrome b5. J Biol Chem (2014) 0.86
Role of protein-protein interactions in cytochrome P450-mediated drug metabolism and toxicity. Chem Res Toxicol (2014) 0.84
Correlating structure and function of drug-metabolizing enzymes: progress and ongoing challenges. Drug Metab Dispos (2013) 0.82
Human liver cytochrome P450 3A4 ubiquitination: molecular recognition by UBC7-gp78 autocrine motility factor receptor and UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 ubiquitin ligase complexes. J Biol Chem (2014) 0.81
Minimize the detection of false positives by the software program DetectShift for 18O-labeled cross-linked peptide analysis. Eur J Mass Spectrom (Chichester, Eng) (2008) 0.81
Another look at the interaction between mitochondrial cytochrome c and flavocytochrome b (2). Eur Biophys J (2011) 0.78
Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses. J Proteome Res (2011) 0.78
Hepatic cytochrome P450 ubiquitination: conformational phosphodegrons for E2/E3 recognition? IUBMB Life (2014) 0.77
Probing structures of large protein complexes using zero-length cross-linking. Methods (2015) 0.77
Hepatic cytochromes P450: structural degrons and barcodes, posttranslational modifications and cellular adapters in the ERAD-endgame. Drug Metab Rev (2016) 0.75
A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria. Cell Host Microbe (2010) 4.98
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci U S A (2002) 4.96
Genetic basis of proteome variation in yeast. Nat Genet (2007) 3.04
Interpolation of animal tracking data in a fluid environment. J Exp Biol (2006) 2.98
Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients. Mol Microbiol (2007) 2.87
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biol (2007) 2.68
Experimental protein mixture for validating tandem mass spectral analysis. OMICS (2002) 2.54
The study of macromolecular complexes by quantitative proteomics. Nat Genet (2003) 2.44
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Mol Cell Proteomics (2004) 2.22
Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology (2005) 2.21
Mass spectrometry based targeted protein quantification: methods and applications. J Proteome Res (2009) 2.20
Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infect Immun (2006) 2.18
Transcription factor Foxp3 and its protein partners form a complex regulatory network. Nat Immunol (2012) 2.10
A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe (2012) 2.08
Genetic variation shapes protein networks mainly through non-transcriptional mechanisms. PLoS Biol (2011) 2.08
LPS remodeling is an evolved survival strategy for bacteria. Proc Natl Acad Sci U S A (2012) 2.05
Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal Chem (2009) 1.96
Quantitative proteomic analysis of Myc oncoprotein function. EMBO J (2002) 1.89
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell (2012) 1.88
A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Commun Mass Spectrom (2003) 1.85
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. ISME J (2010) 1.80
The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. BMC Genomics (2011) 1.79
Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis (2002) 1.78
Wind, waves, and wing loading: morphological specialization may limit range expansion of endangered albatrosses. PLoS One (2008) 1.74
Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities. Cell Microbiol (2009) 1.66
Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. Proteomics (2003) 1.62
Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry. Anal Chem (2006) 1.61
Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Mol Cell Proteomics (2007) 1.58
Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique. Anal Chem (2010) 1.58
A Francisella mutant in lipid A carbohydrate modification elicits protective immunity. PLoS Pathog (2008) 1.58
Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Anal Chem (2008) 1.56
Inhibition of macrophage migration inhibitory factor (MIF) tautomerase and biological activities by acetaminophen metabolites. Proc Natl Acad Sci U S A (2002) 1.55
Salivary α-synuclein and DJ-1: potential biomarkers for Parkinson's disease. Brain (2011) 1.53
Protein identification using top-down. Mol Cell Proteomics (2011) 1.50
Heart rate and energy expenditure of incubating wandering albatrosses: basal levels, natural variation, and the effects of human disturbance. J Exp Biol (2002) 1.45
Proteomic analysis of human prostasomes. Prostate (2003) 1.45
Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Anal Chem (2008) 1.44
Human p53 is inhibited by glutathionylation of cysteines present in the proximal DNA-binding domain during oxidative stress. Biochemistry (2007) 1.43
Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiol Aging (2005) 1.39
Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Res (2005) 1.39
Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proc Natl Acad Sci U S A (2003) 1.39
Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. J Cell Biol (2004) 1.38
Structural heterogeneity and environmentally regulated remodeling of Francisella tularensis subspecies novicida lipid A characterized by tandem mass spectrometry. J Am Soc Mass Spectrom (2007) 1.37
Shearwater foraging in the Southern Ocean: the roles of prey availability and winds. PLoS One (2010) 1.37
Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis. Pancreas (2007) 1.35
A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry. Proteomics (2007) 1.31
A Review of Tandem Mass Spectrometry Characterization of Adenosine Diphosphate-Ribosylated Peptides. Int J Mass Spectrom (2011) 1.29
Rules governing protein identification by mass spectrometry. Rapid Commun Mass Spectrom (2005) 1.29
Analysis of alpha-synuclein-associated proteins by quantitative proteomics. J Biol Chem (2004) 1.27
Quantitative proteomic profiling of pancreatic cancer juice. Proteomics (2006) 1.25
Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics (2008) 1.23
Multiplexed and data-independent tandem mass spectrometry for global proteome profiling. Mass Spectrom Rev (2013) 1.23
xComb: a cross-linked peptide database approach to protein-protein interaction analysis. J Proteome Res (2010) 1.22
Genetically distinct pathways guide effector export through the type VI secretion system. Mol Microbiol (2014) 1.20
Serine/threonine acetylation of TGFβ-activated kinase (TAK1) by Yersinia pestis YopJ inhibits innate immune signaling. Proc Natl Acad Sci U S A (2012) 1.20
Cumulative human impacts on marine predators. Nat Commun (2013) 1.19
Corticosterone and foraging behavior in a pelagic seabird. Physiol Biochem Zool (2007) 1.19
Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach. Proc Natl Acad Sci U S A (2008) 1.18
An inducible cytochrome P450 3A4-dependent vitamin D catabolic pathway. Mol Pharmacol (2011) 1.18
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Mol Cell Proteomics (2007) 1.18
MglA regulates Francisella tularensis subsp. novicida (Francisella novicida) response to starvation and oxidative stress. J Bacteriol (2007) 1.17
On the benefits of acquiring peptide fragment ions at high measured mass accuracy. J Am Soc Mass Spectrom (2008) 1.17
Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury. Am J Pathol (2006) 1.16
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol Cell Proteomics (2003) 1.15
Improving mass and liquid chromatography based identification of proteins using bayesian scoring. J Proteome Res (2005) 1.14
Precursor ion independent algorithm for top-down shotgun proteomics. J Am Soc Mass Spectrom (2009) 1.14
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. J Bacteriol (2003) 1.13
Dynamic habitat models: using telemetry data to project fisheries bycatch. Proc Biol Sci (2011) 1.13
Stromal mesenchyme cell genes of the human prostate and bladder. BMC Urol (2005) 1.13
Cooperative binding of midazolam with testosterone and alpha-naphthoflavone within the CYP3A4 active site: a NMR T1 paramagnetic relaxation study. Biochemistry (2005) 1.12
Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. J Proteome Res (2013) 1.11
Faster, quantitative, and accurate precursor acquisition independent from ion count. Anal Chem (2011) 1.11
Contemporary and historical separation of transequatorial migration between genetically distinct seabird populations. Nat Commun (2011) 1.11
Identification and type III-dependent secretion of the Yersinia pestis insecticidal-like proteins. Mol Microbiol (2007) 1.09
System-based proteomic analysis of the interferon response in human liver cells. Genome Biol (2004) 1.09
Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Res (2004) 1.09
Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs. J Proteome Res (2010) 1.09