Published in Curr Biol on May 09, 2006
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell (2008) 9.02
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol (2008) 5.00
Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol (2009) 4.32
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J (2006) 3.55
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Common functions for diverse small RNAs of land plants. Plant Cell (2007) 3.30
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol (2008) 3.09
Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A (2007) 3.05
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis. Development (2006) 2.93
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res (2008) 2.89
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell (2008) 2.87
Retracted An endogenous, systemic RNAi pathway in plants. EMBO J (2010) 2.82
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A (2010) 2.74
Pattern formation via small RNA mobility. Genes Dev (2009) 2.50
AGO1-miR173 complex initiates phased siRNA formation in plants. Proc Natl Acad Sci U S A (2008) 2.34
A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev (2007) 2.29
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci U S A (2007) 2.28
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc Natl Acad Sci U S A (2008) 2.21
Concern Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathog (2011) 2.12
Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4. EMBO J (2008) 2.02
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96
The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell (2011) 1.95
Rice MicroRNA effector complexes and targets. Plant Cell (2009) 1.93
Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev (2007) 1.81
Role of small RNAs in host-microbe interactions. Annu Rev Phytopathol (2010) 1.75
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc Natl Acad Sci U S A (2009) 1.72
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell (2010) 1.67
Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1. EMBO J (2012) 1.62
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet (2010) 1.56
Small RNA metabolism in Arabidopsis. Trends Plant Sci (2008) 1.56
Small RNAs and developmental timing in plants. Curr Opin Genet Dev (2009) 1.52
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res (2008) 1.51
Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet (2009) 1.49
Signals and prepatterns: new insights into organ polarity in plants. Genes Dev (2009) 1.49
The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc Natl Acad Sci U S A (2007) 1.46
A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing. Plant Cell (2007) 1.43
The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes. RNA (2009) 1.42
miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant Physiol (2011) 1.34
Components of the Arabidopsis mRNA decapping complex are required for early seedling development. Plant Cell (2007) 1.33
Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell (2007) 1.30
BLADE-ON-PETIOLE 1 and 2 control Arabidopsis lateral organ fate through regulation of LOB domain and adaxial-abaxial polarity genes. Plant Cell (2007) 1.29
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biol (2009) 1.26
The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis. Plant Cell (2010) 1.22
Identification of novel small RNAs in tomato (Solanum lycopersicum). Planta (2007) 1.22
Failure of the tomato trans-acting short interfering RNA program to regulate AUXIN RESPONSE FACTOR3 and ARF4 underlies the wiry leaf syndrome. Plant Cell (2012) 1.22
Small RNAs in development - insights from plants. Curr Opin Genet Dev (2012) 1.21
Activity range of Arabidopsis small RNAs derived from different biogenesis pathways. Plant Physiol (2008) 1.21
Small RNAs - secrets and surprises of the genome. Plant J (2010) 1.20
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol (2009) 1.19
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell (2014) 1.18
Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4. RNA (2011) 1.15
Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PLoS One (2009) 1.14
Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol (2007) 1.12
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proc Natl Acad Sci U S A (2010) 1.12
An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Mol Biol (2011) 1.11
Epigenetic reprogramming during vegetative phase change in maize. Proc Natl Acad Sci U S A (2010) 1.10
Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing. Plant Physiol (2012) 1.10
Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing. BMC Plant Biol (2012) 1.09
The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acids Res (2008) 1.09
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One (2009) 1.08
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J (2012) 1.06
Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum). BMC Plant Biol (2012) 1.05
The Functions of RNA-Dependent RNA Polymerases in Arabidopsis. Arabidopsis Book (2011) 1.05
Distinct regulation of adaxial-abaxial polarity in anther patterning in rice. Plant Cell (2010) 1.04
Leaf development: a cellular perspective. Front Plant Sci (2014) 1.04
ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves. Plant Cell (2010) 1.03
Viroid-induced symptoms in Nicotiana benthamiana plants are dependent on RDR6 activity. Plant Physiol (2008) 1.03
Perspectives on leaf dorsoventral polarity. J Plant Res (2010) 1.02
A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis. Cell Res (2013) 1.02
High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.). PLoS One (2011) 1.02
miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens. Plant Cell (2012) 1.02
A dual role for the S-locus receptor kinase in self-incompatibility and pistil development revealed by an Arabidopsis rdr6 mutation. Plant Cell (2009) 1.02
Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation. BMC Genomics (2013) 1.01
Arabidopsis DRB4 protein in antiviral defense against Turnip yellow mosaic virus infection. Plant J (2011) 1.01
Arabidopsis double-stranded RNA binding protein DRB3 participates in methylation-mediated defense against geminiviruses. J Virol (2013) 1.00
RNAi in Plants: An Argonaute-Centered View. Plant Cell (2016) 0.98
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway. Funct Integr Genomics (2009) 0.96
The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res (2011) 0.95
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol Plant (2012) 0.94
Specific enrichment of miRNAs in Arabidopsis thaliana infected with Tobacco mosaic virus. DNA Res (2007) 0.94
Evidence for large complex networks of plant short silencing RNAs. PLoS One (2010) 0.94
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet (2008) 0.93
DICER-LIKE3 activity in Physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility. Mol Plant (2012) 0.93
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biol Evol (2010) 0.93
Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells. BMC Genomics (2013) 0.90
DRB2 is required for microRNA biogenesis in Arabidopsis thaliana. PLoS One (2012) 0.89
Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA (2011) 0.89
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol (2013) 0.89
AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Plant J (2014) 0.89
In Planta Recognition of a Double-Stranded RNA Synthesis Protein Complex by a Potexviral RNA Silencing Suppressor. Plant Cell (2014) 0.88
Rapid and efficient isolation of high-quality small RNAs from recalcitrant plant species rich in polyphenols and polysaccharides. PLoS One (2014) 0.86
tasiRNA-ARF pathway moderates floral architecture in arabidopsis plants subjected to drought stress. Biomed Res Int (2014) 0.86
Small RNAs in plant defense responses during viral and bacterial interactions: similarities and differences. Front Plant Sci (2013) 0.85
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry. Plant Physiol (2015) 0.85
DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana. Plant Signal Behav (2012) 0.85
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell (2004) 7.68
Functions of microRNAs and related small RNAs in plants. Nat Genet (2006) 5.66
Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell (2002) 5.39
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol (2005) 4.98
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol (2004) 4.69
Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Curr Biol (2003) 3.77
Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci U S A (2005) 3.57
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J (2006) 3.55
A branched pathway for transgene-induced RNA silencing in plants. Curr Biol (2002) 3.17
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell (2007) 2.11
Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell (2004) 2.03
Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Plant Cell (2005) 1.99
The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell (2011) 1.95
Form, function, and regulation of ARGONAUTE proteins. Plant Cell (2010) 1.87
MicroRNA-directed regulation: to cleave or not to cleave. Trends Plant Sci (2008) 1.77
MicroRNAs: something important between the genes. Curr Opin Plant Biol (2004) 1.68
ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways. EMBO Rep (2009) 1.54
Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends Plant Sci (2008) 1.48
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet (2009) 1.42
microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis. Plant J (2010) 1.42
The plasma membrane oxidase NtrbohD is responsible for AOS production in elicited tobacco cells. Plant J (2002) 1.41
Arabidopsis RPA2: a genetic link among transcriptional gene silencing, DNA repair, and DNA replication. Curr Biol (2005) 1.32
The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis. Plant Cell (2010) 1.22
MicroRNA maturation and action--the expanding roles of ARGONAUTEs. Curr Opin Plant Biol (2008) 1.22
Gene silencing in plants: a diversity of pathways. Biochim Biophys Acta (2013) 1.19
Rapid establishment of genetic incompatibility through natural epigenetic variation. Curr Biol (2012) 1.19
The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 gene codes for an S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Plant Cell (2005) 1.18
siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res (2010) 1.12
A neomorphic sgs3 allele stabilizing miRNA cleavage products reveals that SGS3 acts as a homodimer. FEBS J (2009) 1.08
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J (2012) 1.06
Getting the most out of publicly available T-DNA insertion lines. Plant J (2008) 1.03
NADPH oxidase-mediated reactive oxygen species production: subcellular localization and reassessment of its role in plant defense. Mol Plant Microbe Interact (2009) 1.02
Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell (2013) 1.02
The origin and effect of small RNA signaling in plants. Front Plant Sci (2012) 1.02
Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant J (2014) 1.02
Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Res (2013) 1.00
Mutants of GABA transaminase (POP2) suppress the severe phenotype of succinic semialdehyde dehydrogenase (ssadh) mutants in Arabidopsis. PLoS One (2008) 1.00
Rac regulation of NtrbohD, the oxidase responsible for the oxidative burst in elicited tobacco cell. Plant J (2004) 0.99
RNA polymerase IV and transcriptional silencing. Nat Genet (2005) 0.99
Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis. Planta (2010) 0.98
A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS One (2011) 0.96
Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing. Plant Physiol (2008) 0.96
The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res (2011) 0.95
A single transgene locus triggers both transcriptional and post-transcriptional silencing through double-stranded RNA production. Planta (2006) 0.95
RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One (2012) 0.94
Role of N-glycosylation sites and CXC motifs in trafficking of medicago truncatula Nod factor perception protein to plasma membrane. J Biol Chem (2012) 0.93
Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2013) 0.93
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet (2008) 0.93
AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. PLoS One (2011) 0.93
Mutations in the Arabidopsis H3K4me2/3 demethylase JMJ14 suppress posttranscriptional gene silencing by decreasing transgene transcription. Plant Cell (2012) 0.92
Lipo-chitooligosaccharidic symbiotic signals are recognized by LysM receptor-like kinase LYR3 in the legume Medicago truncatula. ACS Chem Biol (2013) 0.90
A non-canonical plant microRNA target site. Nucleic Acids Res (2014) 0.89
Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA (2011) 0.89
Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiol (2014) 0.82
New strigolactone analogs as plant hormones with low activities in the rhizosphere. Mol Plant (2013) 0.80
Implication of the glutamine synthetase/glutamate synthase pathway in conditioning the amino acid metabolism in bundle sheath and mesophyll cells of maize leaves. FEBS J (2008) 0.77
Correction: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genet (2016) 0.75
Synthesis of lipo-chitooligosaccharide analogues and their interaction with LYR3, a high affinity binding protein for Nod factors and Myc-LCOs. Org Biomol Chem (2017) 0.75