Published in Plant Cell on August 26, 2010
Intercellular and systemic movement of RNA silencing signals. EMBO J (2011) 1.52
TREX exposes the RNA-binding domain of Nxf1 to enable mRNA export. Nat Commun (2012) 1.30
Architecture and nucleic acids recognition mechanism of the THO complex, an mRNP assembly factor. EMBO J (2012) 1.08
Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell (2013) 1.02
3' fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS3. Proc Natl Acad Sci U S A (2013) 0.99
MOS11: a new component in the mRNA export pathway. PLoS Genet (2010) 0.99
The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res (2011) 0.95
RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One (2012) 0.94
AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. PLoS One (2011) 0.93
Mutations in the Arabidopsis H3K4me2/3 demethylase JMJ14 suppress posttranscriptional gene silencing by decreasing transgene transcription. Plant Cell (2012) 0.92
In Planta Recognition of a Double-Stranded RNA Synthesis Protein Complex by a Potexviral RNA Silencing Suppressor. Plant Cell (2014) 0.88
Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. Mol Cells (2011) 0.86
Metastable differentially methylated regions within Arabidopsis inbred populations are associated with modified expression of non-coding transcripts. PLoS One (2012) 0.85
Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains. PLoS One (2013) 0.84
HYPER RECOMBINATION1 of the THO/TREX complex plays a role in controlling transcription of the REVERSION-TO-ETHYLENE SENSITIVITY1 gene in Arabidopsis. PLoS Genet (2015) 0.82
RNA Export through the NPC in Eukaryotes. Genes (Basel) (2015) 0.82
The exosome and trans-acting small interfering RNAs regulate cuticular wax biosynthesis during Arabidopsis inflorescence stem development. Plant Physiol (2014) 0.80
The role of TREX in gene expression and disease. Biochem J (2016) 0.79
The THO/TREX complex functions in disease resistance in Arabidopsis. Plant Signal Behav (2012) 0.78
The yeast THO complex forms a 5-subunit assembly that directly interacts with active chromatin. Bioarchitecture (2012) 0.78
KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1. Proc Natl Acad Sci U S A (2015) 0.77
SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis. Nucleic Acids Res (2015) 0.76
SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis. Nucleic Acids Res (2016) 0.76
The THO/TREX Complex Active in miRNA Biogenesis Negatively Regulates Root-Associated Acid Phosphatase Activity Induced by Phosphate Starvation. Plant Physiol (2016) 0.76
A Short Open Reading Frame Encompassing the MicroRNA173 Target Site Plays a Role in trans-Acting Small Interfering RNA Biogenesis. Plant Physiol (2016) 0.76
The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis. Plant Cell (2016) 0.75
The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module. Curr Biol (2017) 0.75
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell (2000) 11.44
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell (2000) 10.42
Origin, biogenesis, and activity of plant microRNAs. Cell (2009) 9.96
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev (2004) 8.18
Antiviral immunity directed by small RNAs. Cell (2007) 8.09
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell (2004) 7.68
Widespread translational inhibition by plant miRNAs and siRNAs. Science (2008) 7.51
Methylation as a crucial step in plant microRNA biogenesis. Science (2005) 7.16
RNA polymerase IV directs silencing of endogenous DNA. Science (2005) 6.66
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science (2006) 6.33
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A (2005) 6.09
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev (2005) 6.04
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr Biol (2005) 5.99
Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions. EMBO J (1997) 5.67
Functions of microRNAs and related small RNAs in plants. Nat Genet (2006) 5.66
Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell (1998) 5.58
Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell (2002) 5.39
AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc Natl Acad Sci U S A (2000) 5.03
SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO J (2001) 4.89
Total silencing by intron-spliced hairpin RNAs. Nature (2000) 4.78
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat Genet (2005) 4.00
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets. Mol Cell (2004) 3.96
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol (2006) 3.90
Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Curr Biol (2003) 3.77
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science (2010) 3.57
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J (2006) 3.55
A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell (2008) 3.39
A link between mRNA turnover and RNA interference in Arabidopsis. Science (2004) 3.22
FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res (2002) 3.21
A branched pathway for transgene-induced RNA silencing in plants. Curr Biol (2002) 3.17
DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis. Curr Biol (2001) 2.85
Retracted An endogenous, systemic RNAi pathway in plants. EMBO J (2010) 2.82
Retracted Small RNA duplexes function as mobile silencing signals between plant cells. Science (2010) 2.76
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res (2006) 2.71
Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis. Proc Natl Acad Sci U S A (2007) 2.64
Arabidopsis mutants impaired in cosuppression. Plant Cell (1998) 2.58
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol (2005) 2.56
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell (2007) 2.55
Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways. Nat Genet (2007) 2.48
RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway. EMBO Rep (2006) 2.43
TREX, SR proteins and export of mRNA. Curr Opin Cell Biol (2005) 2.19
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell (2007) 2.11
Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.05
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc Natl Acad Sci U S A (2009) 1.72
Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis. Plant Cell (2007) 1.64
Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing. Science (2007) 1.63
Interaction with host SGS3 is required for suppression of RNA silencing by tomato yellow leaf curl virus V2 protein. Proc Natl Acad Sci U S A (2007) 1.59
ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways. EMBO Rep (2009) 1.54
DICER-LIKE2 plays a primary role in transitive silencing of transgenes in Arabidopsis. PLoS One (2008) 1.43
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet (2009) 1.42
SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies. FEBS Lett (2009) 1.36
RNAi, heterochromatin and the cell cycle. Trends Genet (2008) 1.25
Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis. Proc Natl Acad Sci U S A (2010) 1.21
SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J (2007) 1.19
siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res (2010) 1.12
A neomorphic sgs3 allele stabilizing miRNA cleavage products reveals that SGS3 acts as a homodimer. FEBS J (2009) 1.08
Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing. Proc Natl Acad Sci U S A (2009) 0.92
Mixing and matching: the essence of plant systemic silencing? Trends Genet (2008) 0.87
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell (2004) 7.68
Functions of microRNAs and related small RNAs in plants. Nat Genet (2006) 5.66
Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell (2002) 5.39
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol (2005) 4.98
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol (2004) 4.69
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol (2006) 3.90
Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Curr Biol (2003) 3.77
Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci U S A (2005) 3.57
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J (2006) 3.55
A branched pathway for transgene-induced RNA silencing in plants. Curr Biol (2002) 3.17
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell (2007) 2.11
Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell (2004) 2.03
Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Plant Cell (2005) 1.99
Form, function, and regulation of ARGONAUTE proteins. Plant Cell (2010) 1.87
MicroRNAs: something important between the genes. Curr Opin Plant Biol (2004) 1.68
ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways. EMBO Rep (2009) 1.54
Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends Plant Sci (2008) 1.48
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet (2009) 1.42
The plasma membrane oxidase NtrbohD is responsible for AOS production in elicited tobacco cells. Plant J (2002) 1.41
Arabidopsis RPA2: a genetic link among transcriptional gene silencing, DNA repair, and DNA replication. Curr Biol (2005) 1.32
MicroRNA maturation and action--the expanding roles of ARGONAUTEs. Curr Opin Plant Biol (2008) 1.22
Gene silencing in plants: a diversity of pathways. Biochim Biophys Acta (2013) 1.19
The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 gene codes for an S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Plant Cell (2005) 1.18
siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res (2010) 1.12
A neomorphic sgs3 allele stabilizing miRNA cleavage products reveals that SGS3 acts as a homodimer. FEBS J (2009) 1.08
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J (2012) 1.06
Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell (2013) 1.02
NADPH oxidase-mediated reactive oxygen species production: subcellular localization and reassessment of its role in plant defense. Mol Plant Microbe Interact (2009) 1.02
Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant J (2014) 1.02
The origin and effect of small RNA signaling in plants. Front Plant Sci (2012) 1.02
Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Res (2013) 1.00
Rac regulation of NtrbohD, the oxidase responsible for the oxidative burst in elicited tobacco cell. Plant J (2004) 0.99
RNA polymerase IV and transcriptional silencing. Nat Genet (2005) 0.99
A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS One (2011) 0.96
The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res (2011) 0.95
A single transgene locus triggers both transcriptional and post-transcriptional silencing through double-stranded RNA production. Planta (2006) 0.95
RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One (2012) 0.94
Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2013) 0.93
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet (2008) 0.93
AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. PLoS One (2011) 0.93
Mutations in the Arabidopsis H3K4me2/3 demethylase JMJ14 suppress posttranscriptional gene silencing by decreasing transgene transcription. Plant Cell (2012) 0.92
Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA (2011) 0.89
Correction: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genet (2016) 0.75