Published in BMC Bioinformatics on May 09, 2006
Stem Leydig cell differentiation: gene expression during development of the adult rat population of Leydig cells. Biol Reprod (2011) 0.89
Mining 3D patterns from gene expression temporal data: a new tricluster evaluation measure. ScientificWorldJournal (2014) 0.78
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A (2001) 68.44
Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74
affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics (2004) 32.08
Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol (2001) 15.02
Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res (2001) 12.92
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol (2005) 8.32
Normalization and analysis of DNA microarray data by self-consistency and local regression. Genome Biol (2002) 5.13
Modeling of DNA microarray data by using physical properties of hybridization. Proc Natl Acad Sci U S A (2003) 2.95
Centralization: a new method for the normalization of gene expression data. Bioinformatics (2001) 2.47
A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. Bioinformatics (2003) 2.16
Correlation test to assess low-level processing of high-density oligonucleotide microarray data. BMC Bioinformatics (2005) 1.86
Ranked prediction of p53 targets using hidden variable dynamic modeling. Genome Biol (2006) 1.78
From the top down: towards a predictive biology of signalling networks. Trends Biotechnol (2003) 0.99
Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients. J Clin Invest (2008) 7.05
A census of amplified and overexpressed human cancer genes. Nat Rev Cancer (2010) 4.47
Prognostic value of blood mRNA expression signatures in castration-resistant prostate cancer: a prospective, two-stage study. Lancet Oncol (2012) 2.31
Age and CD4 count at initiation of antiretroviral therapy in HIV-infected children: effects on long-term T-cell reconstitution. J Infect Dis (2011) 2.13
Network motifs: structure does not determine function. BMC Genomics (2006) 2.01
Integration of ERG gene mapping and gene-expression profiling identifies distinct categories of human prostate cancer. BJU Int (2008) 1.88
Abnormal cortical development after premature birth shown by altered allometric scaling of brain growth. PLoS Med (2006) 1.86
Discovery of genes with highly restricted expression patterns in the Drosophila wing disc using DNA oligonucleotide microarrays. Development (2003) 1.84
Quantifying the development of the peripheral naive CD4+ T-cell pool in humans. Blood (2009) 1.79
Ranked prediction of p53 targets using hidden variable dynamic modeling. Genome Biol (2006) 1.78
Follicle dynamics and anovulation in polycystic ovary syndrome. Hum Reprod Update (2008) 1.77
Systems biology of persistent infection: tuberculosis as a case study. Nat Rev Microbiol (2008) 1.70
Early postoperative monocyte deactivation predicts systemic inflammation and prolonged stay in pediatric cardiac intensive care. Crit Care Med (2002) 1.68
Detection of TMPRSS2-ERG translocations in human prostate cancer by expression profiling using GeneChip Human Exon 1.0 ST arrays. J Mol Diagn (2007) 1.55
A HIF-regulated VHL-PTP1B-Src signaling axis identifies a therapeutic target in renal cell carcinoma. Sci Transl Med (2011) 1.48
Coronary intraplaque hemorrhage evokes a novel atheroprotective macrophage phenotype. Am J Pathol (2009) 1.44
Disruption of the stratum corneum allows potent epicutaneous immunization with protein antigens resulting in a dominant systemic Th2 response. Eur J Immunol (2004) 1.40
Dead reckoning: can we trust estimates of mortality rates in clinical databases? Eur J Cardiothorac Surg (2007) 1.26
Quantifying thymic export: combining models of naive T cell proliferation and TCR excision circle dynamics gives an explicit measure of thymic output. J Immunol (2009) 1.20
Follicle-stimulating hormone affects metaphase I chromosome alignment and increases aneuploidy in mouse oocytes matured in vitro. Biol Reprod (2004) 1.20
Predicting patterns of long-term CD4 reconstitution in HIV-infected children starting antiretroviral therapy in sub-Saharan Africa: a cohort-based modelling study. PLoS Med (2013) 1.19
Novel, gross chromosomal alterations involving PTEN cooperate with allelic loss in prostate cancer. Mod Pathol (2012) 1.19
Retracted STAT-1 facilitates the ATM activated checkpoint pathway following DNA damage. J Cell Sci (2005) 1.17
Differential activation of human and mouse Toll-like receptor 4 by the adjuvant candidate LpxL1 of Neisseria meningitidis. Infect Immun (2008) 1.16
Anti-müllerian hormone protein expression is reduced during the initial stages of follicle development in human polycystic ovaries. J Clin Endocrinol Metab (2005) 1.16
Maintenance of the inner cell mass in human blastocysts from fragmented embryos. Biol Reprod (2002) 1.15
Combining cytokine signalling with T-bet and GATA-3 regulation in Th1 and Th2 differentiation: a model for cellular decision-making. J Theor Biol (2004) 1.12
Down-regulation of the dopamine receptor D2 in mice lacking ataxin 1. Hum Mol Genet (2007) 1.12
Expression profiling of CD133+ and CD133- epithelial cells from human prostate. Prostate (2008) 1.11
Understanding specificity and sensitivity of T-cell recognition. Trends Immunol (2005) 1.11
Understanding the slow depletion of memory CD4+ T cells in HIV infection. PLoS Med (2007) 1.08
Neisseria meningitidis expressing lgtB lipopolysaccharide targets DC-SIGN and modulates dendritic cell function. Cell Microbiol (2006) 1.08
Time- and concentration-dependent changes in gene expression induced by benzo(a)pyrene in two human cell lines, MCF-7 and HepG2. BMC Genomics (2006) 1.08
Combinatorial stresses kill pathogenic Candida species. Med Mycol (2012) 1.03
Dissection of a complex transcriptional response using genome-wide transcriptional modelling. Mol Syst Biol (2009) 1.01
Human dendritic cell activation by Neisseria meningitidis: phagocytosis depends on expression of lipooligosaccharide (LOS) by the bacteria and is required for optimal cytokine production. Cell Microbiol (2004) 0.99
Nonidentifiability of the source of intrinsic noise in gene expression from single-burst data. PLoS Comput Biol (2008) 0.99
Reconstruction of cell population dynamics using CFSE. BMC Bioinformatics (2007) 0.99
From the top down: towards a predictive biology of signalling networks. Trends Biotechnol (2003) 0.99
PRKC-ζ Expression Promotes the Aggressive Phenotype of Human Prostate Cancer Cells and Is a Novel Target for Therapeutic Intervention. Genes Cancer (2010) 0.98
Feedback control of T-cell receptor activation. Proc Biol Sci (2004) 0.98
AHR- and DNA-damage-mediated gene expression responses induced by benzo(a)pyrene in human cell lines. Chem Res Toxicol (2007) 0.98
Disordered follicle development in ovaries of prenatally androgenized ewes. J Endocrinol (2007) 0.98
Fratricide: a mechanism for T memory-cell homeostasis. Trends Immunol (2003) 0.97
Improved risk stratification in myeloma using a microRNA-based classifier. Br J Haematol (2013) 0.95
Effect of cell shape and packing density on granulosa cell proliferation and formation of multiple layers during early follicle development in the ovary. J Cell Sci (2008) 0.95
Sperm-induced modification of the oviductal gene expression profile after natural insemination in mice. Biol Reprod (2004) 0.94
Low red cell production may protect against severe anemia during a malaria infection--insights from modeling. J Theor Biol (2008) 0.94
Abnormal preantral folliculogenesis in polycystic ovaries is associated with increased granulosa cell division. J Clin Endocrinol Metab (2007) 0.94
A gene expression-based predictor for myeloma patients at high risk of developing bone disease on bisphosphonate treatment. Clin Cancer Res (2011) 0.93
Epicutaneous immunization converts subsequent and established antigen-specific T helper type 1 (Th1) to Th2-type responses. Immunology (2006) 0.90
Fitting ordinary differential equations to short time course data. Philos Trans A Math Phys Eng Sci (2008) 0.90
Radiation-induced delayed cell death in a hypomorphic Artemis cell line. Hum Mol Genet (2006) 0.90
New role for LEKTI in skin barrier formation: label-free quantitative proteomic identification of caspase 14 as a novel target for the protease inhibitor LEKTI. J Proteome Res (2010) 0.89
siRNA knockdown of ribosomal protein gene RPL19 abrogates the aggressive phenotype of human prostate cancer. PLoS One (2011) 0.89
Interlaboratory and interplatform comparison of microarray gene expression analysis of HepG2 cells exposed to benzo(a)pyrene. OMICS (2009) 0.88
Lateralization of the central circadian pacemaker output: a test of neural control of peripheral oscillator phase. Am J Physiol Regul Integr Comp Physiol (2010) 0.88
Antiretroviral therapy increases thymic output in children with HIV. AIDS (2014) 0.87
Prolonged survival in culture of preantral follicles from polycystic ovaries. J Clin Endocrinol Metab (2007) 0.87
Epicutaneous immunization with type II collagen inhibits both onset and progression of chronic collagen-induced arthritis. PLoS One (2007) 0.85
Robustness of the p53 network and biological hackers. FEBS Lett (2005) 0.84
Poly(amidoamine) dendrimer nanocarriers and their aerosol formulations for siRNA delivery to the lung epithelium. Mol Pharm (2014) 0.84
Clonally diverse T cell homeostasis is maintained by a common program of cell-cycle control. J Immunol (2013) 0.83
Impaired interferon-gamma responses, increased interleukin-17 expression, and a tumor necrosis factor-alpha transcriptional program in invasive aspergillosis. J Infect Dis (2009) 0.82
Energy substrate metabolism of mouse cumulus-oocyte complexes: response to follicle-stimulating hormone is mediated by the phosphatidylinositol 3-kinase pathway and is associated with oocyte maturation. Biol Reprod (2004) 0.82
Epstein-Barr virus can establish infection in the absence of a classical memory B-cell population. J Virol (2005) 0.82
Comparing antigen-independent mechanisms of T cell regulation. J Theor Biol (2004) 0.82
Propellant-based inhalers for the non-invasive delivery of genes via oral inhalation. J Control Release (2011) 0.82
A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi. BMC Res Notes (2012) 0.81
Modelling the activation of alkaline pH response transcription factor PacC in Aspergillus nidulans: involvement of a negative feedback loop. J Theor Biol (2013) 0.79
[Effects of Epstein-Barr virus on host gene expression in Burkitt's lymphoma cell lines]. Ai Zheng (2009) 0.79
Role of Insulin-like growth factors in initiation of follicle growth in normal and polycystic human ovaries. J Clin Endocrinol Metab (2013) 0.78
Performance measurement in congenital heart surgery: benefits and drawbacks. Semin Thorac Cardiovasc Surg Pediatr Card Surg Annu (2003) 0.78
CD31+ cell percentage correlation with speed of CD4+ T-cell count recovery in HIV-infected adults is reversed in children: higher thymic output may be responsible. Clin Infect Dis (2012) 0.77
A gene expression based predictor for high risk myeloma treated with intensive therapy and autologous stem cell rescue. Leuk Lymphoma (2014) 0.76
The identification of a new role for LEKTI in the skin: The use of protein 'bait' arrays to detect defective trafficking of dermcidin in the skin of patients with Netherton syndrome. J Proteomics (2012) 0.75