Published in Science on July 06, 2006
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Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J Bacteriol (2009) 2.51
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Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLoS Biol (2013) 2.19
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Metabolic trade-offs and the maintenance of the fittest and the flattest. Nature (2011) 1.82
Microbial laboratory evolution in the era of genome-scale science. Mol Syst Biol (2011) 1.78
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E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli. PLoS Genet (2009) 1.18
Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog (2010) 1.18
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biol Evol (2010) 1.17
The renaissance of continuous culture in the post-genomics age. J Ind Microbiol Biotechnol (2010) 1.10
Cyclic AMP-dependent catabolite repression is the dominant control mechanism of metabolic fluxes under glucose limitation in Escherichia coli. J Bacteriol (2008) 1.09
Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition. Microbiol Mol Biol Rev (2012) 1.07
Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population. J Bacteriol (2006) 1.06
The multiplicity of divergence mechanisms in a single evolving population. Genome Biol (2012) 1.05
Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. PLoS Genet (2011) 1.01
The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps. PLoS Genet (2014) 1.00
Phenotypic diversity caused by differential RpoS activity among environmental Escherichia coli isolates. Appl Environ Microbiol (2011) 0.99
Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments. PLoS Genet (2014) 0.99
Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli. J Biol Chem (2011) 0.97
Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species. ISME J (2013) 0.96
The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example. BMC Microbiol (2011) 0.96
Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology. PLoS Genet (2013) 0.95
Founder niche constrains evolutionary adaptive radiation. Proc Natl Acad Sci U S A (2013) 0.94
Insertion sequence-driven evolution of Escherichia coli in chemostats. J Mol Evol (2011) 0.94
Emergence of stable polymorphisms driven by evolutionary games between mutants. Nat Commun (2012) 0.94
The enduring utility of continuous culturing in experimental evolution. Genomics (2014) 0.93
Mutational spectrum drives the rise of mutator bacteria. PLoS Genet (2013) 0.93
The functional basis of adaptive evolution in chemostats. FEMS Microbiol Rev (2014) 0.92
Evolution of resource cycling in ecosystems and individuals. BMC Evol Biol (2009) 0.91
A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli. ISME J (2013) 0.89
Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture. Microbiology (2011) 0.89
Evolution of diversity in spatially structured Escherichia coli populations. Appl Environ Microbiol (2009) 0.89
Adaptation in a mouse colony monoassociated with Escherichia coli K-12 for more than 1,000 days. Appl Environ Microbiol (2010) 0.87
Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli. J Bacteriol (2010) 0.86
The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. MBio (2012) 0.86
Massive diversification in aging colonies of Escherichia coli. J Bacteriol (2014) 0.85
Mutations in global regulators lead to metabolic selection during adaptation to complex environments. PLoS Genet (2014) 0.85
The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates. Heredity (Edinb) (2012) 0.85
Inherited adaptation of genome-rewired cells in response to a challenging environment. HFSP J (2010) 0.83
Ex uno plures: clonal reinforcement drives evolution of a simple microbial community. PLoS Genet (2014) 0.83
Survival kinetics of starving bacteria is biphasic and density-dependent. PLoS Comput Biol (2015) 0.81
Simple phenotypic sweeps hide complex genetic changes in populations. Genome Biol Evol (2015) 0.81
Stochasticity versus determinism: consequences for realistic gene regulatory network modelling and evolution. J Mol Evol (2010) 0.81
Temporal changes in species interactions in simple aquatic bacterial communities. BMC Ecol (2012) 0.80
Intraguild predation provides a selection mechanism for bacterial antagonistic compounds. Proc Biol Sci (2012) 0.80
A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli. BMC Genomics (2013) 0.79
Mutation accumulation and fitness in mutator subpopulations of Escherichia coli. Biol Lett (2012) 0.79
Horizontal gene transfer, dispersal and haloarchaeal speciation. Life (Basel) (2015) 0.79
Long-term diversity and genome adaptation of Acinetobacter baylyi in a minimal-medium chemostat. Genome Biol Evol (2013) 0.78
Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism. BMC Syst Biol (2017) 0.78
A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input-mutation output relationships. PLoS Biol (2017) 0.78
The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species. J Bacteriol (2014) 0.77
Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model. PeerJ (2016) 0.76
Stability of Cross-Feeding Polymorphisms in Microbial Communities. PLoS Comput Biol (2016) 0.76
Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages. PLoS One (2016) 0.76
Evolution of coexistence in a crowded microplate well. Proc Natl Acad Sci U S A (2015) 0.75
Applying the emergency risk management process to tackle the crisis of antibiotic resistance. Front Microbiol (2015) 0.75
Characterization of acetic acid-detoxifying Escherichia coli evolved under phosphate starvation conditions. Microb Cell Fact (2016) 0.75
Quantitative high-throughput population dynamics in continuous-culture by automated microscopy. Sci Rep (2016) 0.75
Metabolism at evolutionary optimal States. Metabolites (2015) 0.75
Evolutionary implications of Liebig's law of the minimum: Selection under low concentrations of two nonsubstitutable nutrients. Ecol Evol (2017) 0.75
rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J Bacteriol (2002) 2.28
A regulatory trade-off as a source of strain variation in the species Escherichia coli. J Bacteriol (2004) 1.89
Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli. Anal Biochem (2003) 1.82
Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12. Microbiology (2008) 1.18
Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog (2010) 1.18
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biol Evol (2010) 1.17
Enrichment and elimination of mutY mutators in Escherichia coli populations. Genetics (2002) 1.16
The N terminus of the Escherichia coli transcription activator MalT is the domain of interaction with MalY. J Bacteriol (2002) 1.13
The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations. Proc Biol Sci (2003) 1.11
Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition. Microbiol Mol Biol Rev (2012) 1.07
Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population. J Bacteriol (2006) 1.06
The role of isocitrate lyase and the glyoxylate cycle in Escherichia coli growing under glucose limitation. Res Microbiol (2004) 1.05
The multiplicity of divergence mechanisms in a single evolving population. Genome Biol (2012) 1.05
Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations. Genetics (2006) 1.01
Regulation of mutY and nature of mutator mutations in Escherichia coli populations under nutrient limitation. J Bacteriol (2002) 0.99
The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example. BMC Microbiol (2011) 0.96
The nature of laboratory domestication changes in freshly isolated Escherichia coli strains. Environ Microbiol (2013) 0.92
A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli. ISME J (2013) 0.89
Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli. J Bacteriol (2010) 0.86
Alkaline phosphatase as a reporter of sigma(S) levels and rpoS polymorphisms in different E. coli strains. Arch Microbiol (2007) 0.85
The multifactorial influences of RpoS, Mlc and cAMP on ptsG expression under glucose-limited and anaerobic conditions. Res Microbiol (2004) 0.85
Divergent roles of RpoS in Escherichia coli under aerobic and anaerobic conditions. FEMS Microbiol Lett (2005) 0.85
Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations. Evolution (2013) 0.85
The effect of growth atmosphere on the ability of Listeria monocytogenes to survive exposure to acid, proteolytic enzymes and bile salts. Int J Food Microbiol (2003) 0.82
Sensing nutrient levels in bacteria. Nat Chem Biol (2007) 0.81
The activator of GntII genes for gluconate metabolism, GntH, exerts negative control of GntR-regulated GntI genes in Escherichia coli. J Bacteriol (2003) 0.80
The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria. Mol Biosyst (2012) 0.80
Mutation accumulation and fitness in mutator subpopulations of Escherichia coli. Biol Lett (2012) 0.79
A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli. BMC Genomics (2013) 0.79
A metabolic trade-off between phosphate and glucose utilization in Escherichia coli. Mol Biosyst (2014) 0.79
Alterations to the protein profile of bladder carcinoma cell lines induced by plant extract MINA-05 in vitro. Proteomics (2009) 0.76
The fitness costs and benefits of antibiotic resistance in drug-free microenvironments encountered in the human body. Environ Microbiol Rep (2017) 0.75