Published in Plant Cell on July 14, 2006
Completing the cycle: maternal effects as the missing link in plant life histories. Philos Trans R Soc Lond B Biol Sci (2009) 2.24
Dormancy cycling in Arabidopsis seeds is controlled by seasonally distinct hormone-signaling pathways. Proc Natl Acad Sci U S A (2011) 1.66
Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. Plant J (2007) 1.66
Ethylene interacts with abscisic acid to regulate endosperm rupture during germination: a comparative approach using Lepidium sativum and Arabidopsis thaliana. Plant Cell (2009) 1.59
Elucidating the germination transcriptional program using small molecules. Plant Physiol (2008) 1.53
FAX1, a novel membrane protein mediating plastid fatty acid export. PLoS Biol (2015) 1.52
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc Natl Acad Sci U S A (2011) 1.49
12-oxo-phytodienoic acid accumulation during seed development represses seed germination in Arabidopsis. Plant Cell (2011) 1.46
Proteomic analysis of seed dormancy in Arabidopsis. Plant Physiol (2006) 1.45
The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.44
ABI4 mediates abscisic acid and cytokinin inhibition of lateral root formation by reducing polar auxin transport in Arabidopsis. Plant Cell (2010) 1.39
The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis. Plant Physiol (2010) 1.30
Seed dormancy and germination. Arabidopsis Book (2008) 1.27
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol (2013) 1.23
A seed coat bedding assay shows that RGL2-dependent release of abscisic acid by the endosperm controls embryo growth in Arabidopsis dormant seeds. Proc Natl Acad Sci U S A (2010) 1.21
A role for multiple circadian clock genes in the response to signals that break seed dormancy in Arabidopsis. Plant Cell (2009) 1.16
Seed germination of GA-insensitive sleepy1 mutants does not require RGL2 protein disappearance in Arabidopsis. Plant Cell (2007) 1.15
Oxylipin Signaling: A Distinct Role for the Jasmonic Acid Precursor cis-(+)-12-Oxo-Phytodienoic Acid (cis-OPDA). Front Plant Sci (2012) 1.14
ABI4 regulates primary seed dormancy by regulating the biogenesis of abscisic acid and gibberellins in arabidopsis. PLoS Genet (2013) 1.13
Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Mol Cell (2014) 1.12
Direct targets of the transcription factors ABA-Insensitive(ABI)4 and ABI5 reveal synergistic action by ABI4 and several bZIP ABA response factors. Plant Mol Biol (2011) 1.12
Spatially and genetically distinct control of seed germination by phytochromes A and B. Genes Dev (2012) 1.11
RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth. Plant Physiol (2008) 1.10
Gibberellin signaling: a theme and variations on DELLA repression. Plant Physiol (2012) 1.10
Abscisic acid represses growth of the Arabidopsis embryonic axis after germination by enhancing auxin signaling. Plant Cell (2009) 1.09
HFR1 sequesters PIF1 to govern the transcriptional network underlying light-initiated seed germination in Arabidopsis. Plant Cell (2013) 1.09
Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets. Plant Cell (2011) 1.08
ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination. Front Plant Sci (2013) 1.06
Regulation of seed germination in the close Arabidopsis relative Lepidium sativum: a global tissue-specific transcript analysis. Plant Physiol (2011) 1.02
Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray. Plant Methods (2010) 1.02
A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana. BMC Syst Biol (2011) 1.02
ABI4 activates DGAT1 expression in Arabidopsis seedlings during nitrogen deficiency. Plant Physiol (2011) 1.02
The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development. J Exp Bot (2010) 1.02
Towards a systems biology approach to understanding seed dormancy and germination. Proc Biol Sci (2009) 1.02
Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PLoS One (2011) 1.01
Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells. Plant Physiol (2008) 0.99
(1)O2-mediated retrograde signaling during late embryogenesis predetermines plastid differentiation in seedlings by recruiting abscisic acid. Proc Natl Acad Sci U S A (2009) 0.97
Global analysis of gene expression profiles in developing physic nut (Jatropha curcas L.) seeds. PLoS One (2012) 0.97
MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects. Silence (2010) 0.96
Distinct cell wall architectures in seed endosperms in representatives of the Brassicaceae and Solanaceae. Plant Physiol (2012) 0.96
TAP46 plays a positive role in the ABSCISIC ACID INSENSITIVE5-regulated gene expression in Arabidopsis. Plant Physiol (2013) 0.96
EDL3 is an F-box protein involved in the regulation of abscisic acid signalling in Arabidopsis thaliana. J Exp Bot (2011) 0.95
Three endo-β-mannanase genes expressed in the micropylar endosperm and in the radicle influence germination of Arabidopsis thaliana seeds. Planta (2010) 0.95
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst Biol (2010) 0.95
Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions. Plant Physiol (2011) 0.94
ABI4 and its role in chloroplast retrograde communication. Front Plant Sci (2013) 0.92
Arabidopsis glutamate receptor homolog3.5 modulates cytosolic Ca2+ level to counteract effect of abscisic acid in seed germination. Plant Physiol (2015) 0.92
Expression of 9-cis-EPOXYCAROTENOID DIOXYGENASE4 is essential for thermoinhibition of lettuce seed germination but not for seed development or stress tolerance. Plant Cell (2013) 0.88
Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes. BMC Genomics (2013) 0.87
Peroxidases identified in a subtractive cDNA library approach show tissue-specific transcript abundance and enzyme activity during seed germination of Lepidium sativum. J Exp Bot (2009) 0.87
Environment sensing in spring-dispersed seeds of a winter annual Arabidopsis influences the regulation of dormancy to align germination potential with seasonal changes. New Phytol (2014) 0.87
Abscisic acid transporters cooperate to control seed germination. Nat Commun (2015) 0.86
AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis. PLoS One (2014) 0.85
The Arabidopsis mutant, fy-1, has an ABA-insensitive germination phenotype. J Exp Bot (2012) 0.85
RLK7, a leucine-rich repeat receptor-like kinase, is required for proper germination speed and tolerance to oxidative stress in Arabidopsis thaliana. Planta (2010) 0.85
A Petunia homeodomain-leucine zipper protein, PhHD-Zip, plays an important role in flower senescence. PLoS One (2014) 0.84
The Arabidopsis MYB96 Transcription Factor Is a Positive Regulator of ABSCISIC ACID-INSENSITIVE4 in the Control of Seed Germination. Plant Physiol (2015) 0.84
In vitro binding of Sorghum bicolor transcription factors ABI4 and ABI5 to a conserved region of a GA 2-OXIDASE promoter: possible role of this interaction in the expression of seed dormancy. J Exp Bot (2013) 0.83
Circadian clock-dependent gating in ABA signalling networks. Protoplasma (2011) 0.83
HRS1 acts as a negative regulator of abscisic acid signaling to promote timely germination of Arabidopsis seeds. PLoS One (2012) 0.82
The Putative E3 Ubiquitin Ligase ECERIFERUM9 Regulates Abscisic Acid Biosynthesis and Response during Seed Germination and Postgermination Growth in Arabidopsis. Plant Physiol (2014) 0.82
Ethylene, a key factor in the regulation of seed dormancy. Front Plant Sci (2014) 0.82
An annotated database of Arabidopsis mutants of acyl lipid metabolism. Plant Cell Rep (2014) 0.82
Expression of ABA signalling genes and ABI5 protein levels in imbibed Sorghum bicolor caryopses with contrasting dormancy and at different developmental stages. Ann Bot (2009) 0.81
The AtCathB3 gene, encoding a cathepsin B-like protease, is expressed during germination of Arabidopsis thaliana and transcriptionally repressed by the basic leucine zipper protein GBF1. J Exp Bot (2014) 0.81
Physiological and proteomic analyses on artificially aged Brassica napus seed. Front Plant Sci (2015) 0.81
Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants. Genome Biol Evol (2016) 0.81
An Arabidopsis mutant able to green after extended dark periods shows decreased transcripts of seed protein genes and altered sensitivity to abscisic acid. J Exp Bot (2008) 0.80
RRP41L, a putative core subunit of the exosome, plays an important role in seed germination and early seedling growth in Arabidopsis. Plant Physiol (2012) 0.80
The RTM resistance to potyviruses in Arabidopsis thaliana: natural variation of the RTM genes and evidence for the implication of additional genes. PLoS One (2012) 0.80
Genomic dissection of the seed. Front Plant Sci (2014) 0.80
Regulation of Arabidopsis thaliana seed dormancy and germination by 12-oxo-phytodienoic acid. J Exp Bot (2016) 0.80
Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element. Plant Cell (2014) 0.80
Expression of ABSCISIC ACID INSENSITIVE 4 (ABI4) in developing Arabidopsis seedlings. Plant Signal Behav (2011) 0.80
Analysis of Arabidopsis glucose insensitive growth mutants reveals the involvement of the plastidial copper transporter PAA1 in glucose-induced intracellular signaling. Plant Physiol (2012) 0.79
Arabidopsis thaliana uncoupling proteins (AtUCPs): insights into gene expression during development and stress response and epigenetic regulation. J Bioenerg Biomembr (2011) 0.79
ABSCISIC ACID-INSENSITIVE 4 negatively regulates flowering through directly promoting Arabidopsis FLOWERING LOCUS C transcription. J Exp Bot (2015) 0.78
Storage reserve mobilisation and seedling establishment in Arabidopsis. Arabidopsis Book (2006) 0.78
A mechanism of growth inhibition by abscisic acid in germinating seeds of Arabidopsis thaliana based on inhibition of plasma membrane H+-ATPase and decreased cytosolic pH, K+, and anions. J Exp Bot (2014) 0.78
Systems biology and genome-wide approaches to unveil the molecular players involved in the pre-germinative metabolism: implications on seed technology traits. Plant Cell Rep (2016) 0.78
Comparative transcriptome analysis of wheat embryo and endosperm responses to ABA and H2O2 stresses during seed germination. BMC Genomics (2016) 0.77
Genome-scale transcriptome analysis in response to nitric oxide in birch cells: implications of the triterpene biosynthetic pathway. PLoS One (2014) 0.77
Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination. Plant Physiol (2016) 0.77
Re-induction of the cell cycle in the Arabidopsis post-embryonic root meristem is ABA-insensitive, GA-dependent and repressed by KRP6. Sci Rep (2016) 0.76
An Arabidopsis mitochondria-localized RRL protein mediates abscisic acid signal transduction through mitochondrial retrograde regulation involving ABI4. J Exp Bot (2015) 0.76
Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana. Elife (2016) 0.76
A sunflower WRKY transcription factor stimulates the mobilization of seed-stored reserves during germination and post-germination growth. Plant Cell Rep (2016) 0.76
Gene Mining for Proline Based Signaling Proteins in Cell Wall of Arabidopsis thaliana. Front Plant Sci (2017) 0.75
Awake1, an ABC-Type Transporter, Reveals an Essential Role for Suberin in the Control of Seed Dormancy. Plant Physiol (2017) 0.75
T-6b allocates more assimilation product for oil synthesis and less for polysaccharide synthesis during the seed development of Arabidopsis thaliana. Biotechnol Biofuels (2017) 0.75
The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana. PLoS One (2016) 0.75
Arabidopsis HY1-Modulated Stomatal Movement: An Integrative Hub Is Functionally Associated with ABI4 in Dehydration-Induced ABA Responsiveness. Plant Physiol (2015) 0.75
The Transcriptional Coregulator LEUNIG_HOMOLOG Inhibits Light-Dependent Seed Germination in Arabidopsis. Plant Cell (2015) 0.75
Coordination of seed dormancy and germination processes by MYB96. Plant Signal Behav (2015) 0.75
Dormant and after-Ripened Arabidopsis thaliana Seeds are Distinguished by Early Transcriptional Differences in the Imbibed State. Front Plant Sci (2016) 0.75
Histidine Regulates Seed Oil Deposition through Abscisic Acid Biosynthesis and β-Oxidation. Plant Physiol (2016) 0.75
Soybean GmDREBL Increases Lipid Content in Seeds of Transgenic Arabidopsis. Sci Rep (2016) 0.75
A WD40 protein, AtGHS40, negatively modulates abscisic acid degrading and signaling genes during seedling growth under high glucose conditions. J Plant Res (2016) 0.75
Co-evolution of Domain Interactions in the Chloroplast TGD1, 2, 3 Lipid Transfer Complex Specific to Brassicaceae and Poaceae Plants. Plant Cell (2017) 0.75
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GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J (1987) 57.37
A gene expression map of Arabidopsis thaliana development. Nat Genet (2005) 17.39
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell (1992) 8.36
Analysis of microarray data using Z score transformation. J Mol Diagn (2003) 6.82
The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell (2000) 6.18
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Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell (2003) 3.96
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The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J (2000) 2.88
Impaired sucrose-induction mutants reveal the modulation of sugar-induced starch biosynthetic gene expression by abscisic acid signalling. Plant J (2001) 2.61
Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of Arabidopsis thaliana seeds. Plant Cell (2004) 2.56
Sucrose control of phytochrome A signaling in Arabidopsis. Plant Cell (1997) 2.28
The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses. Plant J (2000) 2.23
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The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination. Plant Physiol (2004) 2.12
Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. Plant J (2006) 1.93
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Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol (2002) 1.86
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