Published in Bioinformatics on July 31, 2006
Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol (2011) 3.12
A portrait of copy-number polymorphism in Drosophila melanogaster. Proc Natl Acad Sci U S A (2007) 2.24
Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet (2009) 2.13
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Mol Biol Evol (2008) 1.54
The evolutionary causes and consequences of sex-biased gene expression. Nat Rev Genet (2013) 1.50
A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res (2012) 1.48
Dosage compensation and demasculinization of X chromosomes in Drosophila. Curr Biol (2010) 1.45
Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Res (2012) 1.40
Strong purifying selection at synonymous sites in D. melanogaster. PLoS Genet (2013) 1.34
Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution. Mol Biol Evol (2011) 1.32
Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biol (2008) 1.22
Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle. Genome Biol Evol (2010) 1.21
Intralocus sexual conflict resolved through gene duplication. Trends Ecol Evol (2011) 1.18
Little evidence for demasculinization of the Drosophila X chromosome among genes expressed in the male germline. Genome Biol Evol (2012) 1.16
Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biol Evol (2010) 1.14
The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae). PLoS One (2009) 1.14
Transitions between male and female heterogamety caused by sex-antagonistic selection. Genetics (2010) 1.13
Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression. Evolution (2010) 1.13
Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Genome Biol (2012) 1.11
Direct targets of the D. melanogaster DSXF protein and the evolution of sexual development. Development (2011) 1.10
Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. Genome Biol (2014) 1.08
Gene expression during Drosophila melanogaster egg development before and after reproductive diapause. BMC Genomics (2009) 1.07
Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila. Genome Biol Evol (2011) 1.07
Population and sex differences in Drosophila melanogaster brain gene expression. BMC Genomics (2012) 1.01
Population transcriptomics of Drosophila melanogaster females. BMC Genomics (2011) 0.99
The ontogeny and evolution of sex-biased gene expression in Drosophila melanogaster. Mol Biol Evol (2014) 0.98
Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila. BMC Biol (2010) 0.97
The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression. Genome Res (2013) 0.95
Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution. Genome Biol Evol (2012) 0.94
Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J (2012) 0.94
A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res (2014) 0.90
Mutational bias shaping fly copy number variation: implications for genome evolution. Trends Genet (2010) 0.90
Gene duplication and the genome distribution of sex-biased genes. Int J Evol Biol (2011) 0.87
Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup. BMC Evol Biol (2009) 0.86
Faster-X effects in two Drosophila lineages. Genome Biol Evol (2014) 0.86
'Escaping' the X chromosome leads to increased gene expression in the male germline of Drosophila melanogaster. Heredity (Edinb) (2013) 0.85
Sex-specific effects of a parasite evolving in a female-biased host population. BMC Biol (2012) 0.84
No evidence for a global male-specific lethal complex-mediated dosage compensation contribution to the demasculinization of the Drosophila melanogaster X chromosome. PLoS One (2014) 0.83
Genomics of sex determination in Drosophila. Brief Funct Genomics (2012) 0.83
Sex-specific effects of cis-regulatory variants in Drosophila melanogaster. Genetics (2013) 0.81
Population- and sex-biased gene expression in the excretion organs of Drosophila melanogaster. G3 (Bethesda) (2014) 0.81
Variation in the X:Autosome Distribution of Male-Biased Genes among Drosophila melanogaster Tissues and Its Relationship with Dosage Compensation. Genome Biol Evol (2015) 0.81
Inter- and intraspecific variation in Drosophila genes with sex-biased expression. Int J Evol Biol (2012) 0.80
Expression profile and gene age jointly shaped the genome-wide distribution of premature termination codons in a Drosophila melanogaster population. Mol Biol Evol (2014) 0.80
Mating system variation drives rapid evolution of the female transcriptome in Drosophila pseudoobscura. Ecol Evol (2014) 0.78
The effects of sex-biased gene expression and X-linkage on rates of adaptive protein sequence evolution in Drosophila. Biol Lett (2015) 0.78
X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues. PeerJ (2015) 0.77
Sex-biased networks and nodes of sexually antagonistic conflict in Drosophila. Int J Evol Biol (2013) 0.76
Rapid evolution of the intersexual genetic correlation for fitness in Drosophila melanogaster. Evolution (2016) 0.75
De Novo Transcriptome Assembly and Sex-Biased Gene Expression in the Cyclical Parthenogenetic Daphnia galeata. Genome Biol Evol (2016) 0.75
X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. Heredity (Edinb) (2017) 0.75
Sex-specific gene expression in the mosquito Culex pipiens f. molestus in response to artificial light at night. BMC Genomics (2016) 0.75
Adult Drosophila melanogaster evolved for antibacterial defense invest in infection-induced expression of both humoral and cellular immunity genes. BMC Res Notes (2011) 0.75
Sex and genetic background influence Superoxide dismutase (cSOD) related phenotypic variation in Drosophila melanogaster. G3 (Bethesda) (2017) 0.75
The evolution of sex-biased genes and sex-biased gene expression. Nat Rev Genet (2007) 5.43
Rapid evolution of male-biased gene expression in Drosophila. Proc Natl Acad Sci U S A (2003) 3.45
X chromosome inactivation during Drosophila spermatogenesis. PLoS Biol (2007) 1.99
Molecular evolution of sex-biased genes in Drosophila. Mol Biol Evol (2004) 1.72
Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics (2006) 1.67
Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila. Proc Natl Acad Sci U S A (2007) 1.63
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Mol Biol Evol (2008) 1.54
Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation. Genetics (2004) 1.53
Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biol (2008) 1.22
The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae). PLoS One (2009) 1.14
Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression. Genetics (2005) 1.05
Population and sex differences in Drosophila melanogaster brain gene expression. BMC Genomics (2012) 1.01
Positive correlation between evolutionary rate and recombination rate in Drosophila genes with male-biased expression. Mol Biol Evol (2005) 1.00
Population transcriptomics of Drosophila melanogaster females. BMC Genomics (2011) 0.99
Experimentally increased codon bias in the Drosophila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity. Genetics (2009) 0.99
Fine-scale analysis of X chromosome inactivation in the male germ line of Drosophila melanogaster. Mol Biol Evol (2010) 0.95
Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution. Genome Biol Evol (2012) 0.94
Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster. Mol Biol Evol (2011) 0.86
Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup. BMC Evol Biol (2009) 0.86
Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the Drosophila Adh gene. Genetics (2004) 0.83
Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster. Philos Trans R Soc Lond B Biol Sci (2013) 0.81
Newly evolved genes: moving from comparative genomics to functional studies in model systems. How important is genetic novelty for species adaptation and diversification? Bioessays (2012) 0.80
Inter- and intraspecific variation in Drosophila genes with sex-biased expression. Int J Evol Biol (2012) 0.80
Properties of the Kinesin-1 motor DdKif3 from Dictyostelium discoideum. Eur J Cell Biol (2007) 0.78
Dissecting gene expression in mosquito. BMC Genomics (2011) 0.76