Published in RNA on August 24, 2006
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Coordinated posttranscriptional mRNA population dynamics during T-cell activation. Mol Syst Biol (2009) 1.40
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Knockdown of SLBP results in nuclear retention of histone mRNA. RNA (2009) 1.36
Identification of a set of KSRP target transcripts upregulated by PI3K-AKT signaling. BMC Mol Biol (2007) 1.23
Early evolution of histone mRNA 3' end processing. RNA (2007) 1.20
New histone supply regulates replication fork speed and PCNA unloading. J Cell Biol (2013) 1.16
Cyclin F-Mediated Degradation of SLBP Limits H2A.X Accumulation and Apoptosis upon Genotoxic Stress in G2. Mol Cell (2016) 1.01
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U7 snRNAs: a computational survey. Genomics Proteomics Bioinformatics (2007) 0.87
A multiprotein occupancy map of the mRNP on the 3' end of histone mRNAs. RNA (2015) 0.87
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Structural and biochemical studies of SLIP1-SLBP identify DBP5 and eIF3g as SLIP1-binding proteins. Nucleic Acids Res (2013) 0.83
Profiling post-transcriptionally networked mRNA subsets using RIP-Chip and RIP-Seq. Methods (2013) 0.81
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Functional coordination and HuR-mediated regulation of mRNA stability during T cell activation. Nucleic Acids Res (2015) 0.76
Nuclear Speckle-related Protein 70 Binds to Serine/Arginine-rich Splicing Factors 1 and 2 via an Arginine/Serine-like Region and Counteracts Their Alternative Splicing Activity. J Biol Chem (2016) 0.75
The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria. Plant Cell (2016) 0.75
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From birth to death: the complex lives of eukaryotic mRNAs. Science (2005) 8.75
Precision and functional specificity in mRNA decay. Proc Natl Acad Sci U S A (2002) 8.20
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Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol (2004) 6.38
A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Mol Biol Cell (2002) 5.34
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RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell (2005) 2.68
Stem-loop binding protein facilitates 3'-end formation by stabilizing U7 snRNP binding to histone pre-mRNA. Mol Cell Biol (1999) 2.41
The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell (2005) 2.37
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The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein. EMBO J (1997) 2.19
Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes Dev (2003) 2.10
Universal Reference RNA as a standard for microarray experiments. BMC Genomics (2004) 2.00
The stem-loop binding protein is required for efficient translation of histone mRNA in vivo and in vitro. Mol Cell Biol (2002) 1.84
Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev (2004) 1.83
Phosphorylation of stem-loop binding protein (SLBP) on two threonines triggers degradation of SLBP, the sole cell cycle-regulated factor required for regulation of histone mRNA processing, at the end of S phase. Mol Cell Biol (2003) 1.61
Functional specificity of shuttling hnRNPs revealed by genome-wide analysis of their RNA binding profiles. RNA (2005) 1.58
Post-transcriptional operons and regulons co-ordinating gene expression. Chromosome Res (2005) 1.57
Identification of mRNAs associated with alphaCP2-containing RNP complexes. Mol Cell Biol (2003) 1.49
High reproducibility using sodium hydroxide-stripped long oligonucleotide DNA microarrays. Biotechniques (2005) 1.49
Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs. Proc Natl Acad Sci U S A (2004) 1.41
Translation termination is involved in histone mRNA degradation when DNA replication is inhibited. Mol Cell Biol (2005) 1.30
Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Mol Cell (2003) 1.25
Stable ribosome binding to the endoplasmic reticulum enables compartment-specific regulation of mRNA translation. Mol Biol Cell (2005) 1.21
SLBP is associated with histone mRNA on polyribosomes as a component of the histone mRNP. Nucleic Acids Res (2004) 1.16
Global analysis of HuR-regulated gene expression in colon cancer systems of reducing complexity. Gene Expr (2004) 1.12
Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP. RNA (2005) 1.06
RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells. Mol Cancer (2004) 1.04
Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera. Gene (2003) 0.92
Histone H2A.X gene transcription is regulated differently than transcription of other replication-linked histone genes. Mol Cell Biol (1993) 0.90
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet (2011) 5.62
Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA (2012) 5.16
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol (2013) 4.85
Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'. Genes Dev (2008) 3.30
Diverse and specific gene expression responses to stresses in cultured human cells. Mol Biol Cell (2004) 3.02
Molecular subsets in the gene expression signatures of scleroderma skin. PLoS One (2008) 2.66
Optimization and evaluation of T7 based RNA linear amplification protocols for cDNA microarray analysis. BMC Genomics (2002) 2.42
The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell (2005) 2.37
Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1. Nat Struct Mol Biol (2005) 2.34
A core MYC gene expression signature is prominent in basal-like breast cancer but only partially overlaps the core serum response. PLoS One (2009) 2.29
A 3' exonuclease that specifically interacts with the 3' end of histone mRNA. Mol Cell (2003) 2.24
Genetic determinants of lipid traits in diverse populations from the population architecture using genomics and epidemiology (PAGE) study. PLoS Genet (2011) 2.13
Formation of the 3' end of histone mRNA: getting closer to the end. Gene (2007) 2.07
Universal Reference RNA as a standard for microarray experiments. BMC Genomics (2004) 2.00
Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies. J Invest Dermatol (2012) 1.91
Myofibroblasts in murine cutaneous fibrosis originate from adiponectin-positive intradermal progenitors. Arthritis Rheumatol (2015) 1.85
The stem-loop binding protein is required for efficient translation of histone mRNA in vivo and in vitro. Mol Cell Biol (2002) 1.84
A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin (2012) 1.82
Rare codons regulate KRas oncogenesis. Curr Biol (2012) 1.74
A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing. Mol Cell (2007) 1.71
A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100. Mol Cell Biol (2005) 1.65
Phosphorylation of stem-loop binding protein (SLBP) on two threonines triggers degradation of SLBP, the sole cell cycle-regulated factor required for regulation of histone mRNA processing, at the end of S phase. Mol Cell Biol (2003) 1.61
A TGFbeta-responsive gene signature is associated with a subset of diffuse scleroderma with increased disease severity. J Invest Dermatol (2009) 1.60
Developmental control of histone mRNA and dSLBP synthesis during Drosophila embryogenesis and the role of dSLBP in histone mRNA 3' end processing in vivo. Mol Cell Biol (2002) 1.59
The pathogenesis of systemic sclerosis. Annu Rev Pathol (2011) 1.54
A novel zinc finger protein is associated with U7 snRNP and interacts with the stem-loop binding protein in the histone pre-mRNP to stimulate 3'-end processing. Genes Dev (2002) 1.49
FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3' end processing of histone pre-mRNAs. Mol Cell (2009) 1.49
The histone 3'-terminal stem-loop-binding protein enhances translation through a functional and physical interaction with eukaryotic initiation factor 4G (eIF4G) and eIF3. Mol Cell Biol (2002) 1.48
Staged assembly of histone gene expression machinery at subnuclear foci in the abbreviated cell cycle of human embryonic stem cells. Proc Natl Acad Sci U S A (2008) 1.41
Drinking-water arsenic exposure modulates gene expression in human lymphocytes from a U.S. population. Environ Health Perspect (2008) 1.39
Identification of TTP mRNA targets in human dendritic cells reveals TTP as a critical regulator of dendritic cell maturation. RNA (2008) 1.37
Knockdown of SLBP results in nuclear retention of histone mRNA. RNA (2009) 1.36
A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs. Mol Cell (2009) 1.35
A phenomics-based strategy identifies loci on APOC1, BRAP, and PLCG1 associated with metabolic syndrome phenotype domains. PLoS Genet (2011) 1.35
Characterization of 3'hExo, a 3' exonuclease specifically interacting with the 3' end of histone mRNA. J Biol Chem (2006) 1.33
SLIP1, a factor required for activation of histone mRNA translation by the stem-loop binding protein. Mol Cell Biol (2007) 1.33
Interspecies comparison of human and murine scleroderma reveals IL-13 and CCL2 as disease subset-specific targets. Am J Pathol (2012) 1.32
Interferon and alternative activation of monocyte/macrophages in systemic sclerosis-associated pulmonary arterial hypertension. Arthritis Rheum (2011) 1.31
Consistent directions of effect for established type 2 diabetes risk variants across populations: the population architecture using Genomics and Epidemiology (PAGE) Consortium. Diabetes (2012) 1.31
Translation termination is involved in histone mRNA degradation when DNA replication is inhibited. Mol Cell Biol (2005) 1.30
Diverse effects of methylseleninic acid on the transcriptional program of human prostate cancer cells. Mol Biol Cell (2003) 1.30
Developmental and cell cycle regulation of the Drosophila histone locus body. Mol Biol Cell (2007) 1.30
Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors. Mol Biol Cell (2013) 1.29
PPARγ downregulation by TGFß in fibroblast and impaired expression and function in systemic sclerosis: a novel mechanism for progressive fibrogenesis. PLoS One (2010) 1.29
Nuclear autoantigenic sperm protein (NASP), a linker histone chaperone that is required for cell proliferation. J Biol Chem (2006) 1.28
Phosphorylation of threonine 61 by cyclin a/Cdk1 triggers degradation of stem-loop binding protein at the end of S phase. Mol Cell Biol (2008) 1.27
Drosophila histone locus bodies form by hierarchical recruitment of components. J Cell Biol (2011) 1.25
Nuclear import of the stem-loop binding protein and localization during the cell cycle. Mol Biol Cell (2005) 1.25
Limited systemic sclerosis patients with pulmonary arterial hypertension show biomarkers of inflammation and vascular injury. PLoS One (2010) 1.25
Wnt/β-catenin signaling is hyperactivated in systemic sclerosis and induces Smad-dependent fibrotic responses in mesenchymal cells. Arthritis Rheum (2012) 1.22
Molecular framework for response to imatinib mesylate in systemic sclerosis. Arthritis Rheum (2009) 1.22
U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis. RNA (2006) 1.20
Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding. Proc Natl Acad Sci U S A (2006) 1.20
Molecular signatures in skin associated with clinical improvement during mycophenolate treatment in systemic sclerosis. J Invest Dermatol (2013) 1.19
A conserved Myc protein domain, MBIV, regulates DNA binding, apoptosis, transformation, and G2 arrest. Mol Cell Biol (2006) 1.17
SLBP is associated with histone mRNA on polyribosomes as a component of the histone mRNP. Nucleic Acids Res (2004) 1.16
Transforming growth factor-beta in systemic sclerosis (scleroderma). Front Biosci (Schol Ed) (2009) 1.16
Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development. BioData Min (2013) 1.15
Drosophila stem-loop binding protein intracellular localization is mediated by phosphorylation and is required for cell cycle-regulated histone mRNA expression. Mol Biol Cell (2004) 1.15
A subset of Drosophila integrator proteins is essential for efficient U7 snRNA and spliceosomal snRNA 3'-end formation. Mol Cell Biol (2010) 1.13
A Golgi-localized hexose transporter is involved in heterotrimeric G protein-mediated early development in Arabidopsis. Mol Biol Cell (2006) 1.11
3' end processing of Drosophila melanogaster histone pre-mRNAs: requirement for phosphorylated Drosophila stem-loop binding protein and coevolution of the histone pre-mRNA processing system. Mol Cell Biol (2002) 1.10
Systematic reconstruction of RNA functional motifs with high-throughput microfluidics. Nat Methods (2012) 1.09
Visualizing genomic information across chromosomes with PhenoGram. BioData Min (2013) 1.08
ZFP100, a component of the active U7 snRNP limiting for histone pre-mRNA processing, is required for entry into S phase. Mol Cell Biol (2006) 1.07
Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex. Science (2013) 1.07
Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP. RNA (2005) 1.06
Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing. Mol Cell Biol (2008) 1.06
Fresolimumab treatment decreases biomarkers and improves clinical symptoms in systemic sclerosis patients. J Clin Invest (2015) 1.06
Cloning and characterization of the Drosophila U7 small nuclear RNA. Proc Natl Acad Sci U S A (2003) 1.06
Resveratrol-induced gene expression profiles in human prostate cancer cells. Cancer Epidemiol Biomarkers Prev (2005) 1.05
A complex containing the CPSF73 endonuclease and other polyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3'-end processing. Mol Cell Biol (2012) 1.01
Leveraging Epidemiologic and Clinical Collections for Genomic Studies of Complex Traits. Hum Hered (2015) 1.00
Comparative evaluation of strain-based and model-based modulus elastography. Ultrasound Med Biol (2005) 0.98
mRNAs containing the histone 3' stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3' end. RNA (2012) 0.98
An RNAi screen identifies additional members of the Drosophila Integrator complex and a requirement for cyclin C/Cdk8 in snRNA 3'-end formation. RNA (2012) 0.98
Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield Personalized Medicine Research Project Biobank. Pac Symp Biocomput (2014) 0.98
Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization. Biochemistry (2012) 0.98
Interaction between FLASH and Lsm11 is essential for histone pre-mRNA processing in vivo in Drosophila. RNA (2011) 0.97
Egr-1 induces a profibrotic injury/repair gene program associated with systemic sclerosis. PLoS One (2011) 0.97
Antagonistic effect of the matricellular signaling protein CCN3 on TGF-beta- and Wnt-mediated fibrillinogenesis in systemic sclerosis and Marfan syndrome. J Invest Dermatol (2010) 0.97
Stem-loop binding protein accumulates during oocyte maturation and is not cell-cycle-regulated in the early mouse embryo. J Cell Sci (2002) 0.97
Three proteins of the U7-specific Sm ring function as the molecular ruler to determine the site of 3'-end processing in mammalian histone pre-mRNA. Mol Cell Biol (2009) 0.96
Characterization of mitochondrial haplogroups in a large population-based sample from the United States. Hum Genet (2014) 0.96
The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus. Dev Biol (2006) 0.95
The oligo(A) tail on histone mRNA plays an active role in translational silencing of histone mRNA during Xenopus oogenesis. Mol Cell Biol (2004) 0.95
Differences and similarities between Drosophila and mammalian 3' end processing of histone pre-mRNAs. RNA (2005) 0.95
Levels of adiponectin, a marker for PPAR-gamma activity, correlate with skin fibrosis in systemic sclerosis: potential utility as biomarker? Arthritis Res Ther (2012) 0.95
3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors. RNA (2013) 0.94
Association of the FTO obesity risk variant rs8050136 with percentage of energy intake from fat in multiple racial/ethnic populations: the PAGE study. Am J Epidemiol (2013) 0.94
Coordinate regulation of histone mRNA metabolism and DNA replication: cyclin A/cdk1 is involved in inactivation of histone mRNA metabolism and DNA replication at the end of S phase. Cell Cycle (2010) 0.94
The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination. Mol Cell Biol (2012) 0.94
Enabling high-throughput genotype-phenotype associations in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) project as part of the Population Architecture using Genomics and Epidemiology (PAGE) study. Pac Symp Biocomput (2013) 0.93
A sequence in the Drosophila H3-H4 Promoter triggers histone locus body assembly and biosynthesis of replication-coupled histone mRNAs. Dev Cell (2013) 0.92
FLASH is required for the endonucleolytic cleavage of histone pre-mRNAs but is dispensable for the 5' exonucleolytic degradation of the downstream cleavage product. Mol Cell Biol (2011) 0.92