Published in J Biol Chem on September 13, 2006
Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. Structure (2010) 1.83
The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription. Microbiol Mol Biol Rev (2012) 1.53
Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. Nucleic Acids Res (2009) 1.07
Nucleotide-induced asymmetry within ATPase activator ring drives σ54-RNAP interaction and ATP hydrolysis. Genes Dev (2013) 1.04
A lower-order oligomer form of phage shock protein A (PspA) stably associates with the hexameric AAA(+) transcription activator protein PspF for negative regulation. J Mol Biol (2009) 1.04
The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins. Nucleic Acids Res (2009) 1.00
Engineered interfaces of an AAA+ ATPase reveal a new nucleotide-dependent coordination mechanism. J Biol Chem (2010) 0.97
ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA+ transcriptional activator. Mol Cell (2012) 0.93
Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting. J Mol Biol (2009) 0.92
Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein. Mol Microbiol (2009) 0.87
Trapping of a transcription complex using a new nucleotide analogue: AMP aluminium fluoride. J Mol Biol (2007) 0.86
Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR. Nucleic Acids Res (2009) 0.86
A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements. Nucleic Acids Res (2012) 0.83
Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation. J Biol Chem (2011) 0.82
Dynamics and stoichiometry of a regulated enhancer-binding protein in live Escherichia coli cells. Nat Commun (2013) 0.81
A key hydrophobic patch identified in an AAA⁺ protein essential for its in trans inhibitory regulation. J Mol Biol (2013) 0.80
The CoxD protein, a novel AAA+ ATPase involved in metal cluster assembly: hydrolysis of nucleotide-triphosphates and oligomerization. PLoS One (2012) 0.78
Structure, Regulation, and Inhibition of the Quorum-Sensing Signal Integrator LuxO. PLoS Biol (2016) 0.76
The bacterial enhancer-dependent RNA polymerase. Biochem J (2016) 0.75
Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activator. Nucleic Acids Res (2014) 0.75
Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation. Mol Cell (2017) 0.75
Randomized, double-blind, placebo-controlled phase II study of AMG 386 combined with weekly paclitaxel in patients with recurrent ovarian cancer. J Clin Oncol (2011) 2.62
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology. Nat Commun (2011) 2.06
Structural insights into the activity of enhancer-binding proteins. Science (2005) 2.04
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology. FEMS Microbiol Rev (2010) 1.65
Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor. Mol Microbiol (2008) 1.56
Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF. J Mol Biol (2002) 1.48
The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54. Proc Natl Acad Sci U S A (2003) 1.45
Structural basis of the nucleotide driven conformational changes in the AAA+ domain of transcription activator PspF. J Mol Biol (2006) 1.40
Organization of an activator-bound RNA polymerase holoenzyme. Mol Cell (2008) 1.39
Induction and function of the phage shock protein extracytoplasmic stress response in Escherichia coli. J Biol Chem (2006) 1.37
Structures and organisation of AAA+ enhancer binding proteins in transcriptional activation. J Struct Biol (2006) 1.36
Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G (PspG). J Biol Chem (2004) 1.25
In vivo localizations of membrane stress controllers PspA and PspG in Escherichia coli. Mol Microbiol (2009) 1.17
An intramolecular route for coupling ATPase activity in AAA+ proteins for transcription activation. J Biol Chem (2008) 1.16
Organization of the AAA(+) adaptor protein PspA is an oligomeric ring. J Biol Chem (2003) 1.16
ATP-dependent transcriptional activation by bacterial PspF AAA+protein. J Mol Biol (2004) 1.13
Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein. Mol Microbiol (2007) 1.11
Regulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity. Nat Commun (2011) 1.09
Secretion defects that activate the phage shock response of Escherichia coli. J Bacteriol (2003) 1.09
A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase. Proc Natl Acad Sci U S A (2010) 1.08
Molecular determinants for PspA-mediated repression of the AAA transcriptional activator PspF. J Bacteriol (2005) 1.07
Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element. J Biol Chem (2003) 1.04
A lower-order oligomer form of phage shock protein A (PspA) stably associates with the hexameric AAA(+) transcription activator protein PspF for negative regulation. J Mol Biol (2009) 1.04
Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation. Methods Enzymol (2003) 1.02
Nucleotide-dependent triggering of RNA polymerase-DNA interactions by an AAA regulator of transcription. J Biol Chem (2003) 1.01
Herbaspirillum seropedicae signal transduction protein PII is structurally similar to the enteric GlnK. Eur J Biochem (2002) 1.01
Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli. Nucleic Acids Res (2007) 1.00
The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins. Nucleic Acids Res (2009) 1.00
Coupling AAA protein function to regulated gene expression. Biochim Biophys Acta (2011) 0.99
Reorganisation of an RNA polymerase-promoter DNA complex for DNA melting. EMBO J (2004) 0.98
Protein-DNA interactions that govern AAA+ activator-dependent bacterial transcription initiation. J Mol Biol (2007) 0.98
Customizing cell signaling using engineered genetic logic circuits. Trends Microbiol (2012) 0.97
Engineered interfaces of an AAA+ ATPase reveal a new nucleotide-dependent coordination mechanism. J Biol Chem (2010) 0.97
A role for the conserved GAFTGA motif of AAA+ transcription activators in sensing promoter DNA conformation. J Biol Chem (2006) 0.97
Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in Escherichia coli. Microbiology (2010) 0.97
Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain. EMBO J (2004) 0.96
[Resilience as a protective personality characteristic in the elderly]. Psychother Psychosom Med Psychol (2005) 0.96
Mechanism of homotropic control to coordinate hydrolysis in a hexameric AAA+ ring ATPase. J Mol Biol (2008) 0.96
Protein-induced DNA bending clarifies the architectural organization of the sigma54-dependent glnAp2 promoter. Mol Microbiol (2006) 0.95
Sex differences of carotid intima-media thickness in healthy children and adolescents. Atherosclerosis (2009) 0.95
Activity map of the Escherichia coli RNA polymerase bridge helix. J Biol Chem (2011) 0.94
ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA+ transcriptional activator. Mol Cell (2012) 0.93
Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting. J Mol Biol (2009) 0.92
Stable DNA opening within open promoter complexes is mediated by the RNA polymerase beta'-jaw domain. J Biol Chem (2005) 0.92
Physical, functional and conditional interactions between ArcAB and phage shock proteins upon secretin-induced stress in Escherichia coli. Mol Microbiol (2009) 0.92
Communication between Esigma(54) , promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation. Mol Microbiol (2004) 0.90
A modular cell-based biosensor using engineered genetic logic circuits to detect and integrate multiple environmental signals. Biosens Bioelectron (2012) 0.89
Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies. Nucleic Acids Res (2014) 0.89
Mapping ATP-dependent activation at a sigma54 promoter. J Biol Chem (2006) 0.88
Multiple roles of the RNA polymerase beta subunit flap domain in sigma 54-dependent transcription. J Biol Chem (2002) 0.88
Nitrogen and carbon status are integrated at the transcriptional level by the nitrogen regulator NtrC in vivo. MBio (2013) 0.87
IHF-binding sites inhibit DNA loop formation and transcription initiation. Nucleic Acids Res (2009) 0.87
Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein. Mol Microbiol (2009) 0.87
Gastric adenocarcinoma presenting as uterine metastasis--a case report. Gynecol Oncol (2005) 0.87
Trapping of a transcription complex using a new nucleotide analogue: AMP aluminium fluoride. J Mol Biol (2007) 0.86
Interplay between the beta' clamp and the beta' jaw domains during DNA opening by the bacterial RNA polymerase at sigma54-dependent promoters. J Mol Biol (2006) 0.86
The assessment of recalled parental rearing behavior and its relationship to life satisfaction and interpersonal problems: a general population study. BMC Med Res Methodol (2009) 0.86
[The psychometric quality of the Nottingham Health Profile (NHP) in the general population]. Psychother Psychosom Med Psychol (2003) 0.86
Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN). Nucleic Acids Res (2002) 0.86
[How useful is the calculation of total scores for questionnaires concerning health related quality of life?]. Psychother Psychosom Med Psychol (2005) 0.84
Dissecting the ATP hydrolysis pathway of bacterial enhancer-binding proteins. Biochem Soc Trans (2008) 0.84
Sensor I threonine of the AAA+ ATPase transcriptional activator PspF is involved in coupling nucleotide triphosphate hydrolysis to the restructuring of sigma 54-RNA polymerase. J Biol Chem (2007) 0.84
Dissipation of proton motive force is not sufficient to induce the phage shock protein response in Escherichia coli. Curr Microbiol (2011) 0.83
[Somatoform complaints in the German population]. Z Psychosom Med Psychother (2002) 0.83
A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements. Nucleic Acids Res (2012) 0.83
Single chain forms of the enhancer binding protein PspF provide insights into geometric requirements for gene activation. J Biol Chem (2011) 0.82
Measuring the stoichiometry of functional PspA complexes in living bacterial cells by single molecule photobleaching. Chem Commun (Camb) (2010) 0.82
Lagrangian tracer dynamics in a closed cylindrical turbulent convection cell. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.81
Model-based evolutionary analysis: the natural history of phage-shock stress response. Biochem Soc Trans (2009) 0.81
Sigma54-dependent transcription activator phage shock protein F of Escherichia coli: a fragmentation approach to identify sequences that contribute to self-association. Biochem J (2004) 0.81
Dynamics and stoichiometry of a regulated enhancer-binding protein in live Escherichia coli cells. Nat Commun (2013) 0.81
Interplay among Pseudomonas syringae HrpR, HrpS and HrpV proteins for regulation of the type III secretion system. FEMS Microbiol Lett (2014) 0.80
A dual switch controls bacterial enhancer-dependent transcription. Nucleic Acids Res (2012) 0.80
A key hydrophobic patch identified in an AAA⁺ protein essential for its in trans inhibitory regulation. J Mol Biol (2013) 0.80
Beta subunit residues 186-433 and 436-445 are commonly used by Esigma54 and Esigma70 RNA polymerase for open promoter complex formation. J Mol Biol (2002) 0.80
Interactions of regulated and deregulated forms of the sigma54 holoenzyme with heteroduplex promoter DNA. Nucleic Acids Res (2002) 0.79
From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli. BMC Syst Biol (2011) 0.79
Amplification of small molecule-inducible gene expression via tuning of intracellular receptor densities. Nucleic Acids Res (2015) 0.79
Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB. Mol Biosyst (2015) 0.79
Single-agent irinotecan or FOLFIRI as second-line chemotherapy for advanced colorectal cancer; results of a randomised phase II study (DaVINCI) and meta-analysis [corrected]. Eur J Cancer (2011) 0.78
Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis. Nucleic Acids Res (2009) 0.78
Comparative analysis of activator-Esigma54 complexes formed with nucleotide-metal fluoride analogues. Nucleic Acids Res (2009) 0.78
Visualizing the organization and reorganization of transcription complexes for gene expression. Biochem Soc Trans (2008) 0.78
Rewiring cell signalling through chimaeric regulatory protein engineering. Biochem Soc Trans (2013) 0.78
Conformational changes of Escherichia coli sigma54-RNA-polymerase upon closed-promoter complex formation. J Mol Biol (2005) 0.78
Conditional statistics of thermal dissipation rate in turbulent Rayleigh-Bénard convection. Eur Phys J E Soft Matter (2012) 0.78
Determination of Escherichia coli RNA polymerase structure by single particle cryoelectron microscopy. Methods Enzymol (2003) 0.77
Formation of MgF3 (-)-dependent complexes between an AAA(+) ATPase and σ(54.). FEBS Open Bio (2012) 0.77
An aromatic residue switch in enhancer-dependent bacterial RNA polymerase controls transcription intermediate complex activity. Nucleic Acids Res (2013) 0.77
Self-aggregation of clouds in conditionally unstable moist convection. Proc Natl Acad Sci U S A (2011) 0.75