A novel endonuclease IV post-PCR genotyping system.

PubWeight™: 3.14‹?› | Rank: Top 1%

🔗 View Article (PMC 1636472)

Published in Nucleic Acids Res on September 29, 2006

Authors

Igor V Kutyavin1, Dave Milesi, Yevgeniy Belousov, Mikhail Podyminogin, Alexei Vorobiev, Vladimir Gorn, Eugeny A Lukhtanov, Nicolaas M J Vermeulen, Walt Mahoney

Author Affiliations

1: Nanogen, 21720 23rd Drive SE, Suite 150, Bothell, WA 98021, USA.

Articles citing this

Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity. Nat Genet (2008) 12.43

Variant of TREM2 associated with the risk of Alzheimer's disease. N Engl J Med (2012) 10.16

Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior. Nat Genet (2010) 6.49

Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. Nat Genet (2009) 5.32

Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility. Nat Genet (2009) 5.06

Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations. Nat Genet (2009) 3.46

Several common variants modulate heart rate, PR interval and QRS duration. Nat Genet (2010) 3.34

On the replication of genetic associations: timing can be everything! Am J Hum Genet (2008) 3.32

Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium. Am J Hum Genet (2007) 3.31

Identification of low-frequency variants associated with gout and serum uric acid levels. Nat Genet (2011) 2.48

A germline variant in the TP53 polyadenylation signal confers cancer susceptibility. Nat Genet (2011) 2.43

A study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer. Nat Genet (2012) 2.29

The chromosome 9p21 risk locus is associated with angiographic severity and progression of coronary artery disease. Eur Heart J (2010) 2.04

Discovery of common variants associated with low TSH levels and thyroid cancer risk. Nat Genet (2012) 1.81

Meta-analysis of genome-wide association studies confirms a susceptibility locus for knee osteoarthritis on chromosome 7q22. Ann Rheum Dis (2010) 1.75

Ancestry-shift refinement mapping of the C6orf97-ESR1 breast cancer susceptibility locus. PLoS Genet (2010) 1.74

Sequence variants in the CLDN14 gene associate with kidney stones and bone mineral density. Nat Genet (2009) 1.73

Variants with large effects on blood lipids and the role of cholesterol and triglycerides in coronary disease. Nat Genet (2016) 1.71

European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene. Hum Mol Genet (2011) 1.58

Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases. PLoS Genet (2010) 1.57

Association of a genetic risk score with prevalent and incident myocardial infarction in subjects undergoing coronary angiography. Circ Cardiovasc Genet (2012) 1.54

Variants in DENND1A are associated with polycystic ovary syndrome in women of European ancestry. J Clin Endocrinol Metab (2012) 1.44

Whole-genome sequencing identifies rare genotypes in COMP and CHADL associated with high risk of hip osteoarthritis. Nat Genet (2017) 1.39

European bone mineral density loci are also associated with BMD in East-Asian populations. PLoS One (2010) 1.29

A rare nonsynonymous sequence variant in C3 is associated with high risk of age-related macular degeneration. Nat Genet (2013) 1.23

A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip. Ann Rheum Dis (2013) 1.16

HABP2 G534E Variant in Papillary Thyroid Carcinoma. PLoS One (2016) 1.16

Sequence variants at CYP1A1-CYP1A2 and AHR associate with coffee consumption. Hum Mol Genet (2011) 1.03

Genome-wide significant association between a sequence variant at 15q15.2 and lung cancer risk. Cancer Res (2011) 0.92

A germline mutation in SRRM2, a splicing factor gene, is implicated in papillary thyroid carcinoma predisposition. Sci Rep (2015) 0.91

Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma. Hum Mol Genet (2014) 0.90

New approach to real-time nucleic acids detection: folding polymerase chain reaction amplicons into a secondary structure to improve cleavage of Forster resonance energy transfer probes in 5'-nuclease assays. Nucleic Acids Res (2009) 0.86

Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures. Nat Commun (2016) 0.84

A genetic risk variant for myocardial infarction on chromosome 6p24 is associated with impaired central hemodynamic indexes. Am J Hypertens (2012) 0.84

HLA class II sequence variants influence tuberculosis risk in populations of European ancestry. Nat Genet (2016) 0.80

A Splice Region Variant in LDLR Lowers Non-high Density Lipoprotein Cholesterol and Protects against Coronary Artery Disease. PLoS Genet (2015) 0.79

Insertion of an SVA-E retrotransposon into the CASP8 gene is associated with protection against prostate cancer. Hum Mol Genet (2016) 0.78

GABA-A receptor genes do not play a role in genetics of Lesch's typology in Caucasian subjects. Arch Med Sci (2012) 0.77

Use of base modifications in primers and amplicons to improve nucleic acids detection in the real-time snake polymerase chain reaction. Assay Drug Dev Technol (2010) 0.77

A rare IL33 loss-of-function mutation reduces blood eosinophil counts and protects from asthma. PLoS Genet (2017) 0.76

Papillary Thyroid Carcinoma: Association Between Germline DNA Variant Markers and Clinical Parameters. Thyroid (2016) 0.76

Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia. Mol Psychiatry (2016) 0.75

Replication study of 34 common SNPs associated with prostate cancer in the Romanian population. J Cell Mol Med (2016) 0.75

Common variants upstream of KDR encoding VEGFR2 and in TTC39B associate with endometriosis. Nat Commun (2016) 0.75

Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin. PLoS One (2016) 0.75

A genome-wide association study yields five novel thyroid cancer risk loci. Nat Commun (2017) 0.75

Articles cited by this

Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci U S A (1991) 16.94

Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl (1995) 12.24

Allelic discrimination using fluorogenic probes and the 5' nuclease assay. Genet Anal (1999) 9.80

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry (1998) 9.75

Repair of oxidative damage to DNA: enzymology and biology. Annu Rev Biochem (1994) 7.80

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry (1999) 7.50

Mutagenesis by apurinic/apyrimidinic sites. Annu Rev Genet (1986) 6.07

Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers (1970) 6.03

Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc Natl Acad Sci U S A (1990) 5.85

A new endonuclease from Escherichia coli acting at apurinic sites in DNA. J Biol Chem (1977) 3.40

Homogeneous Escherichia coli endonuclease IV. Characterization of an enzyme that recognizes oxidative damage in DNA. J Biol Chem (1988) 3.15

Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes. Nat Biotechnol (1999) 3.01

Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes. Nucleic Acids Res (2002) 2.65

Incision activity of human apurinic endonuclease (Ape) at abasic site analogs in DNA. J Biol Chem (1995) 2.54

Molecular diagnostics of infectious diseases. Clin Chem (1997) 2.47

Minor groove binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence. Biotechniques (2002) 1.77

An integrated system for high throughput TaqMan based SNP genotyping. Bioinformatics (2001) 1.61

DzyNA-PCR: use of DNAzymes to detect and quantify nucleic acid sequences in a real-time fluorescent format. Clin Chem (2000) 1.59

Thermodynamic and spectral properties of DNA miniduplexes with the terminal G x A mispairs and 3' or 5' dangling bases. FEBS Lett (1997) 1.18

Purification and characterization of Thermotoga maritima endonuclease IV, a thermostable apurinic/apyrimidinic endonuclease and 3'-repair diesterase. J Bacteriol (1999) 1.07

Genotyping single-nucleotide polymorphisms by the invader assay with dual-color fluorescence polarization detection. Clin Chem (2001) 1.07

Substituted 5,6-dihydrofuro[3,2-f]-1,2-benzisoxazole-6-carboxylic acids: high-ceiling diuretics with uricosuric activity. J Med Chem (1984) 1.03

The synthesis of polyamide-oligonucleotide conjugate molecules. Nucleic Acids Res (1990) 0.98

Development and comparison of the real-time amplification based methods--NASBA-Beacon, RT-PCR taqman and RT-PCR hybridization probe assays--for the qualitative detection of sars coronavirus. Southeast Asian J Trop Med Public Health (2004) 0.93

Spermine-mediated improvement of cycling probe reaction. Mol Cell Probes (1998) 0.86

Articles by these authors

Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium. Am J Hum Genet (2007) 3.31

Multiplexed SNP genotyping using the Qbead system: a quantum dot-encoded microsphere-based assay. Nucleic Acids Res (2003) 1.25

Sensitive detection assays for influenza RNA do not reveal viremia in US blood donors. J Infect Dis (2012) 1.14

Novel DNA probes with low background and high hybridization-triggered fluorescence. Nucleic Acids Res (2007) 1.02

Malaria prevalence defined by microscopy, antigen detection, DNA amplification and total nucleic acid amplification in a malaria-endemic region during the peak malaria transmission season. Trop Med Int Health (2011) 0.98

Primers with 5' flaps improve real-time PCR. Biotechniques (2007) 0.97

A spin-echo resolved grazing incidence scattering setup for the neutron interrogation of buried nanostructures. Rev Sci Instrum (2009) 0.96

Single nucleotide polymorphism genotyping by two colour melting curve analysis using the MGB Eclipse Probe System in challenging sequence environment. Hum Genomics (2004) 0.91

Reduced aggregation and improved specificity of G-rich oligodeoxyribonucleotides containing pyrazolo[3,4-d]pyrimidine guanine bases. Nucleic Acids Res (2002) 0.90

Development of a multiplex real-time RT-PCR assay for detection of influenza A, influenza B, RSV and typing of the 2009-H1N1 influenza virus. J Virol Methods (2010) 0.88

Moving through the phase diagram: morphology formation in solution cast polymer-fullerene blend films for organic solar cells. ACS Nano (2011) 0.86

Hierarchical assembly of ultranarrow alkylamine-coated ZnS nanorods: a synchrotron surface X-ray diffraction study. Nano Lett (2008) 0.84

A homogeneous noncompetitive immunoassay for the detection of small haptens. Anal Chem (2002) 0.81

Synthesis of bis-spermine dimers that are potent polyamine transport inhibitors. Bioorg Med Chem Lett (2002) 0.80

Improving the charge transport in self-assembled monolayer field-effect transistors: from theory to devices. J Am Chem Soc (2013) 0.80

Selection of highly productive mammalian cells based on an inducible growth advantage using an antibody/receptor chimera. J Biosci Bioeng (2002) 0.79

Quantitative determination of the lateral density and intermolecular correlation between proteins anchored on the membrane surfaces using grazing incidence small-angle X-ray scattering and grazing incidence X-ray fluorescence. J Chem Phys (2012) 0.78

Physical interactions of fish protamine and antisepsis peptide drugs with bacterial membranes revealed by combination of specular x-ray reflectivity and grazing-incidence x-ray fluorescence. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.77

Self assembly of magnetic nanoparticles at silicon surfaces. Soft Matter (2015) 0.77

A rapid, instrument-free, sample-to-result nucleic acid amplification test. Lab Chip (2016) 0.75

Evaluation of 5'-MGB hybridization probes for detection of Bordetella pertussis and Bordetella parapertussis using different real-time PCR instruments. Diagn Microbiol Infect Dis (2008) 0.75

Synthesis and evaluation of a triplex-forming oligonucleotide-pyrrolobenzodiazepine conjugate. Bioconjug Chem (2004) 0.75

7-aminobutynyl-8-aza-7-deazahypoxanthine as a quasi-universal nucleobase. Nucleosides Nucleotides Nucleic Acids (2013) 0.75

Improved biplex quantitative real-time polymerase chain reaction with modified primers for gene expression analysis. Oligonucleotides (2006) 0.75

5'-MGB probes allow rapid identification of methanogens and sulfate reducers in cold marine sediments by real-time PCR and melting curve analysis. Oligonucleotides (2009) 0.75