Published in Trends Parasitol on October 06, 2006
The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PLoS One (2008) 1.31
Host pathogen protein interactions predicted by comparative modeling. Protein Sci (2007) 1.29
An extremely diverse CD4 response to vaccinia virus in humans is revealed by proteome-wide T-cell profiling. J Virol (2008) 1.27
In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum. BMC Genomics (2010) 1.12
Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs. BMC Genomics (2009) 1.08
The protein-phosphatome of the human malaria parasite Plasmodium falciparum. BMC Genomics (2008) 1.08
Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome, and metabolome analyses. J Biol Chem (2008) 1.05
A kernel for open source drug discovery in tropical diseases. PLoS Negl Trop Dis (2009) 1.00
A genomic glimpse of aminoacyl-tRNA synthetases in malaria parasite Plasmodium falciparum. BMC Genomics (2009) 0.97
A Plasmodium falciparum transcriptional cyclin-dependent kinase-related kinase with a crucial role in parasite proliferation associates with histone deacetylase activity. Eukaryot Cell (2010) 0.96
Gene-specific signatures of elevated non-synonymous substitution rates correlate poorly across the Plasmodium genus. PLoS One (2008) 0.91
Analysis of small nucleolar RNAs reveals unique genetic features in malaria parasites. BMC Genomics (2009) 0.89
Biosynthesis of GDP-fucose and other sugar nucleotides in the blood stages of Plasmodium falciparum. J Biol Chem (2013) 0.88
The Plasmodium export element revisited. PLoS One (2008) 0.82
Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space? Malar J (2006) 0.81
A structural annotation resource for the selection of putative target proteins in the malaria parasite. Malar J (2008) 0.75
Leishmania donovani Encodes a Functional Selenocysteinyl-tRNA Synthase. J Biol Chem (2015) 0.75
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res (2006) 11.43
PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res (2008) 6.73
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res (2003) 6.19
Assessing performance of orthology detection strategies applied to eukaryotic genomes. PLoS One (2007) 5.62
Chemical genetics of Plasmodium falciparum. Nature (2010) 5.52
The Plasmodium genome database. Nature (2002) 4.36
Creating a honey bee consensus gene set. Genome Biol (2007) 4.17
ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Res (2007) 3.96
Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat Rev Microbiol (2004) 3.85
TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res (2009) 3.79
ToxoDB: accessing the Toxoplasma gondii genome. Nucleic Acids Res (2003) 3.24
Dissecting apicoplast targeting in the malaria parasite Plasmodium falciparum. Science (2003) 3.08
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res (2012) 3.02
CryptoDB: a Cryptosporidium bioinformatics resource update. Nucleic Acids Res (2006) 2.68
Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii. Nucleic Acids Res (2005) 2.64
Genomic-scale prioritization of drug targets: the TDR Targets database. Nat Rev Drug Discov (2008) 2.58
The cytokines interleukin 27 and interferon-γ promote distinct Treg cell populations required to limit infection-induced pathology. Immunity (2012) 2.52
Cytoskeletal components of an invasion machine--the apical complex of Toxoplasma gondii. PLoS Pathog (2006) 2.43
ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Res (2006) 2.37
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res (2002) 2.37
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res (2008) 2.35
Daughter cell assembly in the protozoan parasite Toxoplasma gondii. Mol Biol Cell (2002) 2.19
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. Curr Protoc Bioinformatics (2011) 2.15
EuPathDB: a portal to eukaryotic pathogen databases. Nucleic Acids Res (2009) 2.11
Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway. Mol Microbiol (2002) 2.09
The Plasmodium eukaryotic initiation factor-2alpha kinase IK2 controls the latency of sporozoites in the mosquito salivary glands. J Exp Med (2010) 2.08
The transcriptome of Toxoplasma gondii. BMC Biol (2005) 2.06
Gene transfer in the evolution of parasite nucleotide biosynthesis. Proc Natl Acad Sci U S A (2004) 2.05
Just one cross appears capable of dramatically altering the population biology of a eukaryotic pathogen like Toxoplasma gondii. Proc Natl Acad Sci U S A (2006) 1.95
CD8+ T-Cell responses to Trypanosoma cruzi are highly focused on strain-variant trans-sialidase epitopes. PLoS Pathog (2006) 1.93
Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses. Cell Host Microbe (2010) 1.90
Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genet (2006) 1.84
Apicomplexan parasites co-opt host calpains to facilitate their escape from infected cells. Science (2009) 1.77
Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database. Genome Res (2003) 1.75
SynView: a GBrowse-compatible approach to visualizing comparative genome data. Bioinformatics (2006) 1.71
Organellar dynamics during the cell cycle of Toxoplasma gondii. J Cell Sci (2008) 1.70
Golgi biogenesis in Toxoplasma gondii. Nature (2002) 1.67
Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol (2004) 1.61
A novel polymer of tubulin forms the conoid of Toxoplasma gondii. J Cell Biol (2002) 1.56
Measuring tubulin content in Toxoplasma gondii: a comparison of laser-scanning confocal and wide-field fluorescence microscopy. Proc Natl Acad Sci U S A (2002) 1.55
EuPathDB: the eukaryotic pathogen database. Nucleic Acids Res (2012) 1.53
Identification of diverse archaeal proteins with class III signal peptides cleaved by distinct archaeal prepilin peptidases. J Bacteriol (2006) 1.52
Functional inactivation of immature dendritic cells by the intracellular parasite Toxoplasma gondii. J Immunol (2004) 1.49
The Apicomplexan whole-genome phylogeny: an analysis of incongruence among gene trees. Mol Biol Evol (2008) 1.48
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Pathog (2012) 1.44
Toxoplasma gondii scavenges host-derived lipoic acid despite its de novo synthesis in the apicoplast. EMBO J (2006) 1.42
Identification of attractive drug targets in neglected-disease pathogens using an in silico approach. PLoS Negl Trop Dis (2010) 1.39
FungiDB: an integrated functional genomics database for fungi. Nucleic Acids Res (2011) 1.37
Dynamic Imaging of CD8(+) T cells and dendritic cells during infection with Toxoplasma gondii. PLoS Pathog (2009) 1.37
Toward community standards in the quest for orthologs. Bioinformatics (2012) 1.36
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation. Genome Biol (2008) 1.35
piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome. BMC Microbiol (2009) 1.34
Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA. J Clin Microbiol (2011) 1.32
A first glimpse into the pattern and scale of gene transfer in Apicomplexa. Int J Parasitol (2004) 1.31
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Res (2004) 1.30
Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii. Genome Res (2006) 1.28
Cytotoxic T cells mediate pathology and metastasis in cutaneous leishmaniasis. PLoS Pathog (2013) 1.28
Toxoplasma gondii Hsp90 is a potential drug target whose expression and subcellular localization are developmentally regulated. J Mol Biol (2005) 1.27
SchistoDB: a Schistosoma mansoni genome resource. Nucleic Acids Res (2008) 1.26
Presentation of Toxoplasma gondii antigens via the endogenous major histocompatibility complex class I pathway in nonprofessional and professional antigen-presenting cells. Infect Immun (2007) 1.26