PubRank

Roland J Siezen

Author PubWeight™ 96.96‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A 2003 8.40
2 Epochal evolution of GGII.4 norovirus capsid proteins from 1995 to 2006. J Virol 2007 3.71
3 Visualization for genomics: the Microbial Genome Viewer. Bioinformatics 2004 3.52
4 Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J Biol Chem 2006 2.17
5 In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. Appl Environ Microbiol 2005 2.04
6 Reconstructing the metabolic network of a bacterium from its genome. Trends Microbiol 2005 2.03
7 Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol 2005 2.02
8 Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data. BMC Infect Dis 2013 2.01
9 Accelerating the reconstruction of genome-scale metabolic networks. BMC Bioinformatics 2006 1.97
10 The extracellular biology of the lactobacilli. FEMS Microbiol Rev 2010 1.84
11 The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale. Infect Genet Evol 2009 1.76
12 Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol 2005 1.75
13 LocateP: genome-scale subcellular-location predictor for bacterial proteins. BMC Bioinformatics 2008 1.64
14 Comparative genomics of Lactobacillus. Microb Biotechnol 2010 1.60
15 Natural diversity and adaptive responses of Lactococcus lactis. Curr Opin Biotechnol 2006 1.54
16 Correlation between sequence conservation and the genomic context after gene duplication. Nucleic Acids Res 2005 1.54
17 High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster. J Clin Microbiol 2010 1.52
18 Co-regulation of metabolic genes is better explained by flux coupling than by network distance. PLoS Comput Biol 2008 1.46
19 Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria. Microbiology 2006 1.42
20 Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl Environ Microbiol 2008 1.37
21 The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology 2004 1.31
22 The prophage sequences of Lactobacillus plantarum strain WCFS1. Virology 2003 1.28
23 A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. BMC Genomics 2008 1.23
24 Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis. J Bacteriol 2002 1.21
25 Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment. J Bacteriol 2012 1.18
26 Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One 2013 1.18
27 The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment. Microbiology 2006 1.14
28 Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups. Nucleic Acids Res 2006 1.12
29 The proteolytic system of lactic acid bacteria revisited: a genomic comparison. BMC Genomics 2010 1.11
30 An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters. BMC Genomics 2008 1.11
31 PanCGH: a genotype-calling algorithm for pangenome CGH data. Bioinformatics 2009 1.10
32 Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior. BMC Genomics 2011 1.07
33 Complete Genome Sequence of Anoxybacillus flavithermus TNO-09.006, a Thermophilic Sporeformer Associated with a Dairy-Processing Environment. Genome Announc 2013 1.06
34 Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis. Microbiology 2006 1.05
35 SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes. PLoS One 2011 1.03
36 LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria. BMC Genomics 2010 1.02
37 Genetic analysis of the capsid gene of genotype GII.2 noroviruses. J Virol 2008 1.02
38 PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains. BMC Genomics 2012 1.02
39 The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives. Environ Microbiol 2008 1.01
40 PanCGHweb: a web tool for genotype calling in pangenome CGH data. Bioinformatics 2010 1.00
41 Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype. Infect Genet Evol 2011 0.99
42 Functional analysis of three plasmids from Lactobacillus plantarum. Appl Environ Microbiol 2005 0.99
43 Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov models. PLoS One 2013 0.98
44 Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730). J Bacteriol 2012 0.98
45 Making sense of quorum sensing in lactobacilli: a special focus on Lactobacillus plantarum WCFS1. Microbiology 2007 0.97
46 EXProt--a database for EXPerimentally verified Protein functions. In Silico Biol 2002 0.94
47 Reconstruction of the regulatory network of Lactobacillus plantarum WCFS1 on basis of correlated gene expression and conserved regulatory motifs. Microb Biotechnol 2010 0.93
48 Challenges in plant cellular pathway reconstruction based on gene expression profiling. Trends Plant Sci 2007 0.92
49 MGcV: the microbial genomic context viewer for comparative genome analysis. BMC Genomics 2013 0.92
50 In silico prediction of horizontal gene transfer events in Lactobacillus bulgaricus and Streptococcus thermophilus reveals protocooperation in yogurt manufacturing. Appl Environ Microbiol 2009 0.91
51 Genome update: lactic acid bacteria genome sequencing is booming. Microbiology 2005 0.90
52 EXProt: a database for proteins with an experimentally verified function. Nucleic Acids Res 2002 0.89
53 The highly autoaggregative and adhesive phenotype of the vaginal Lactobacillus plantarum strain CMPG5300 is sortase dependent. Appl Environ Microbiol 2013 0.89
54 Preferential deletion events in the direct repeat locus of Mycobacterium tuberculosis. J Clin Microbiol 2011 0.88
55 Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol 2010 0.87
56 Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli. BMC Genomics 2012 0.86
57 Comparative and functional analysis of the rRNA-operons and their tRNA gene complement in different lactic acid bacteria. Syst Appl Microbiol 2005 0.86
58 Genomic tracing of epidemics and disease outbreaks. Microb Biotechnol 2010 0.85
59 A novel hybrid kinase is essential for regulating the sigma(B)-mediated stress response of Bacillus cereus. Environ Microbiol 2009 0.85
60 Novel sigmaB regulation modules of Gram-positive bacteria involve the use of complex hybrid histidine kinases. Microbiology 2010 0.85
61 Single-cell genomics: unravelling the genomes of unculturable microorganisms. Microb Biotechnol 2011 0.84
62 Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria. J Bacteriol 2012 0.84
63 Safety of the surrogate microorganism Enterococcus faecium NRRL B-2354 for use in thermal process validation. Appl Environ Microbiol 2014 0.84
64 Hydrocarbon-degrading bacteria: the oil-spill clean-up crew. Microb Biotechnol 2009 0.82
65 A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis. BMC Genomics 2010 0.82
66 Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacterium Fervidobacterium pennivorans. Extremophiles 2002 0.82
67 Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods. BMC Microbiol 2013 0.82
68 Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman. PLoS One 2013 0.80
69 Improved annotation of conjugated bile acid hydrolase superfamily members in Gram-positive bacteria. Microbiology 2008 0.80
70 Draft Genome Sequence of Lactobacillus plantarum CMPG5300, a Human Vaginal Isolate. Genome Announc 2014 0.80
71 Impact of genomics on microbial food safety. Trends Biotechnol 2004 0.79
72 Searching in microbial genomes for encoded small proteins. Microb Biotechnol 2011 0.78
73 Large intergenic cruciform-like supermotifs in the Lactobacillus plantarum genome. J Bacteriol 2009 0.78
74 Genomics of microalgae, fuel for the future? Microb Biotechnol 2010 0.75
75 Genomics of plant-associated microbes. Microb Biotechnol 2009 0.75
76 Crystallization and preliminary X-ray analysis of carnein, a serine protease from Ipomoea carnea. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.75