Published in Microbiology on November 01, 2006
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer. Microb Cell Fact (2011) 2.22
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol (2012) 1.71
Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells. BMC Microbiol (2010) 1.51
Functional and probiotic attributes of an indigenous isolate of Lactobacillus plantarum. PLoS One (2009) 1.31
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The role of cell surface architecture of lactobacilli in host-microbe interactions in the gastrointestinal tract. Mediators Inflamm (2013) 1.07
Functional characterization of a mucus-specific LPXTG surface adhesin from probiotic Lactobacillus rhamnosus GG. Appl Environ Microbiol (2011) 1.06
LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria. BMC Genomics (2010) 1.02
Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1. BMC Genomics (2009) 1.01
Systems biology of lactic acid bacteria: a critical review. Microb Cell Fact (2011) 0.91
Bioinformatic comparison of bacterial secretomes. Genomics Proteomics Bioinformatics (2009) 0.89
The major autolysin Acm2 from Lactobacillus plantarum undergoes cytoplasmic O-glycosylation. J Bacteriol (2011) 0.87
Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs (2012) 0.86
Identification of key peptidoglycan hydrolases for morphogenesis, autolysis, and peptidoglycan composition of Lactobacillus plantarum WCFS1. Microb Cell Fact (2012) 0.85
Direct selection and phage display of a Gram-positive secretome. Genome Biol (2007) 0.84
Stuck in the Middle: Fibronectin-Binding Proteins in Gram-Positive Bacteria. Front Microbiol (2016) 0.83
Effects of the peptide pheromone plantaricin A and cocultivation with Lactobacillus sanfranciscensis DPPMA174 on the exoproteome and the adhesion capacity of Lactobacillus plantarum DC400. Appl Environ Microbiol (2013) 0.79
Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community. BMC Genomics (2014) 0.79
Adhesion Potential of Intestinal Microbes Predicted by Physico-Chemical Characterization Methods. PLoS One (2015) 0.78
Lactobacillus plantarum WCFS1 and its host interaction: a dozen years after the genome. Microb Biotechnol (2016) 0.77
Comparative Genomic Analysis Reveals Ecological Differentiation in the Genus Carnobacterium. Front Microbiol (2017) 0.75
Stress Physiology of Lactic Acid Bacteria. Microbiol Mol Biol Rev (2016) 0.75
Inhibition of Staphylococcus aureus by lysostaphin-expressing Lactobacillus plantarum WCFS1 in a modified genital tract secretion medium. Appl Environ Microbiol (2011) 0.75
Development of a SCAR (sequence-characterised amplified region) marker for acid resistance-related gene in Lactobacillus plantarum. Extremophiles (2014) 0.75
Enterotypes of the human gut microbiome. Nature (2011) 24.36
Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40
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Epochal evolution of GGII.4 norovirus capsid proteins from 1995 to 2006. J Virol (2007) 3.71
Visualization for genomics: the Microbial Genome Viewer. Bioinformatics (2004) 3.52
10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis. Appl Microbiol Biotechnol (2005) 2.80
New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev (2005) 2.58
Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance. Proc Natl Acad Sci U S A (2009) 2.29
Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches. Environ Microbiol (2009) 2.18
Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J Biol Chem (2006) 2.17
Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat Rev Microbiol (2011) 2.15
Towards understanding molecular modes of probiotic action. Curr Opin Biotechnol (2006) 2.14
Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol (2004) 2.06
In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. Appl Environ Microbiol (2005) 2.04
Reconstructing the metabolic network of a bacterium from its genome. Trends Microbiol (2005) 2.03
Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol (2005) 2.02
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data. BMC Infect Dis (2013) 2.01
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Accelerating the reconstruction of genome-scale metabolic networks. BMC Bioinformatics (2006) 1.97
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium. J Bacteriol (2010) 1.90
Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum. J Bacteriol (2005) 1.85
The extracellular biology of the lactobacilli. FEMS Microbiol Rev (2010) 1.84
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J (2012) 1.81
Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl Environ Microbiol (2011) 1.76
The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale. Infect Genet Evol (2009) 1.76
Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol (2005) 1.75
Isolation of RNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.75
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol (2012) 1.71
Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum. Appl Environ Microbiol (2006) 1.70
Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microbiol (2005) 1.69
Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics (2006) 1.65
LocateP: genome-scale subcellular-location predictor for bacterial proteins. BMC Bioinformatics (2008) 1.64
An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J Bacteriol (2005) 1.61
Cell to cell communication by autoinducing peptides in gram-positive bacteria. Antonie Van Leeuwenhoek (2002) 1.61
Comparative genomics of Lactobacillus. Microb Biotechnol (2010) 1.60
Regulation of human epithelial tight junction proteins by Lactobacillus plantarum in vivo and protective effects on the epithelial barrier. Am J Physiol Gastrointest Liver Physiol (2010) 1.60
High temporal and inter-individual variation detected in the human ileal microbiota. Environ Microbiol (2010) 1.59
Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization. PLoS One (2010) 1.56
Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways. Proc Natl Acad Sci U S A (2010) 1.56
Natural diversity and adaptive responses of Lactococcus lactis. Curr Opin Biotechnol (2006) 1.54
Correlation between sequence conservation and the genomic context after gene duplication. Nucleic Acids Res (2005) 1.54
High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster. J Clin Microbiol (2010) 1.52
Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells. BMC Microbiol (2010) 1.51
Co-regulation of metabolic genes is better explained by flux coupling than by network distance. PLoS Comput Biol (2008) 1.46
Isolation of DNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.43
Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria. Microbiology (2006) 1.42
Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution. Genome Res (2011) 1.41
Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Microbiology (2002) 1.40
Increased production of folate by metabolic engineering of Lactococcus lactis. Appl Environ Microbiol (2003) 1.37
Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl Environ Microbiol (2008) 1.37
Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice. Mucosal Immunol (2012) 1.36
Genetic characterization of the bile salt response in Lactobacillus plantarum and analysis of responsive promoters in vitro and in situ in the gastrointestinal tract. J Bacteriol (2004) 1.36
Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J (2012) 1.34
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model. ISME J (2012) 1.33
Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice. ISME J (2010) 1.33
Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice. Appl Environ Microbiol (2006) 1.31
Regulation of intestinal homeostasis and immunity with probiotic lactobacilli. Trends Immunol (2013) 1.31
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology (2004) 1.31
Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats. Environ Microbiol (2011) 1.31
Multifactorial diversity sustains microbial community stability. ISME J (2013) 1.29
The prophage sequences of Lactobacillus plantarum strain WCFS1. Virology (2003) 1.28
Characterization and functional analysis of the poxB gene, which encodes pyruvate oxidase in Lactobacillus plantarum. J Bacteriol (2004) 1.27
A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. BMC Genomics (2008) 1.23
Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine. Am J Physiol Gastrointest Liver Physiol (2012) 1.23
Effect of different NADH oxidase levels on glucose metabolism by Lactococcus lactis: kinetics of intracellular metabolite pools determined by in vivo nuclear magnetic resonance. Appl Environ Microbiol (2002) 1.21
Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis. J Bacteriol (2002) 1.21
IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis. J Bacteriol (2003) 1.20
The impact of probiotics and prebiotics on the immune system. Nat Rev Immunol (2012) 1.19
Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microb Biotechnol (2011) 1.19
Genome data mining of lactic acid bacteria: the impact of bioinformatics. Curr Opin Biotechnol (2004) 1.19
Development and characterization of a subtilin-regulated expression system in Bacillus subtilis: strict control of gene expression by addition of subtilin. Appl Environ Microbiol (2005) 1.19
Complete genome sequence of Geobacillus thermoglucosidans TNO-09.020, a thermophilic sporeformer associated with a dairy-processing environment. J Bacteriol (2012) 1.18
Use of the alr gene as a food-grade selection marker in lactic acid bacteria. Appl Environ Microbiol (2002) 1.18
Major role of NAD-dependent lactate dehydrogenases in aerobic lactate utilization in Lactobacillus plantarum during early stationary phase. J Bacteriol (2004) 1.18
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One (2013) 1.18
Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed. Appl Environ Microbiol (2010) 1.18
Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1. Microb Cell Fact (2007) 1.17
Microbial community development in a dynamic gut model is reproducible, colon region specific, and selective for Bacteroidetes and Clostridium cluster IX. Appl Environ Microbiol (2010) 1.15
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets. BMC Genomics (2013) 1.15
Lifestyle of Lactobacillus plantarum in the mouse caecum. Environ Microbiol (2009) 1.15
Microbiome dynamics of human epidermis following skin barrier disruption. Genome Biol (2012) 1.15
Lactate racemization as a rescue pathway for supplying D-lactate to the cell wall biosynthesis machinery in Lactobacillus plantarum. J Bacteriol (2005) 1.14
Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups. Nucleic Acids Res (2006) 1.12
Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo. BMC Genomics (2008) 1.12
Diversity of human small intestinal Streptococcus and Veillonella populations. FEMS Microbiol Ecol (2013) 1.12