Published in Nat Methods on November 26, 2006
Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. Proc Natl Acad Sci U S A (2008) 2.53
Novel approaches to developing new antibiotics for bacterial infections. Br J Pharmacol (2007) 2.43
Conjugative plasmids: vessels of the communal gene pool. Philos Trans R Soc Lond B Biol Sci (2009) 2.19
Complex carbohydrate utilization by the healthy human microbiome. PLoS One (2012) 2.01
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res (2010) 1.64
Insights into the bovine rumen plasmidome. Proc Natl Acad Sci U S A (2012) 1.45
Trading molecules and tracking targets in symbiotic interactions. Nat Chem Biol (2008) 1.42
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PLoS One (2011) 1.41
Identification of diverse antimicrobial resistance determinants carried on bacterial, plasmid, or viral metagenomes from an activated sludge microbial assemblage. Appl Environ Microbiol (2010) 1.19
Manipulating Bacterial Communities by in situ Microbiome Engineering. Trends Genet (2016) 1.14
Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. Nucleic Acids Res (2008) 1.14
Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics (2010) 1.11
Metagenomics and novel gene discovery: promise and potential for novel therapeutics. Virulence (2013) 1.03
Community-wide plasmid gene mobilization and selection. ISME J (2013) 1.03
Mobile genetic elements of the human gastrointestinal tract: potential for spread of antibiotic resistance genes. Gut Microbes (2013) 1.02
The human gut mobile metagenome: a metazoan perspective. Gut Microbes (2011) 0.99
Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy. Front Microbiol (2015) 0.97
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome. ISME J (2012) 0.97
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. Nat Commun (2013) 0.97
Comparative (meta)genomic analysis and ecological profiling of human gut-specific bacteriophage φB124-14. PLoS One (2012) 0.96
Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches. Front Microbiol (2015) 0.95
Isolation of bacterial extrachromosomal DNA from human dental plaque associated with periodontal disease, using transposon-aided capture (TRACA). FEMS Microbiol Ecol (2011) 0.92
Application of metagenomics in the human gut microbiome. World J Gastroenterol (2015) 0.90
Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library. PLoS One (2014) 0.89
Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth. Appl Environ Microbiol (2007) 0.88
A Brief Review: The Z-curve Theory and its Application in Genome Analysis. Curr Genomics (2014) 0.83
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. BMC Bioinformatics (2009) 0.82
Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome. PLoS One (2013) 0.81
Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome. Front Microbiol (2014) 0.80
Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome. Bioeng Bugs (2012) 0.80
An improved method for including upper size range plasmids in metamobilomes. PLoS One (2014) 0.80
Recognition of Protein-coding Genes Based on Z-curve Algorithms. Curr Genomics (2014) 0.78
Current strategies for mobilome research. Front Microbiol (2015) 0.78
Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1. Microb Ecol (2013) 0.77
Strategies and approaches in plasmidome studies-uncovering plasmid diversity disregarding of linear elements? Front Microbiol (2015) 0.76
Current evidence for human yersiniosis in Ireland. Eur J Clin Microbiol Infect Dis (2012) 0.76
The rumen plasmidome: A genetic communication hub for the rumen microbiome. Mob Genet Elements (2012) 0.76
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Sci Rep (2016) 0.75
Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective. Indian J Microbiol (2008) 0.75
Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase. PLoS One (2014) 0.75
Plasmid Detection, Characterization, and Ecology. Microbiol Spectr (2015) 0.75
Gut microbiota composition correlates with diet and health in the elderly. Nature (2012) 6.94
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One (2009) 4.93
Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk. Gut (2011) 3.42
Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease. J Clin Microbiol (2006) 2.93
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
A bacterial driver-passenger model for colorectal cancer: beyond the usual suspects. Nat Rev Microbiol (2012) 2.56
Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. Proc Natl Acad Sci U S A (2008) 2.53
Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses. Biol Psychiatry (2008) 2.52
The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults. Front Cell Infect Microbiol (2013) 1.87
Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces. ISME J (2008) 1.70
Metabonomic and microbiological analysis of the dynamic effect of vancomycin-induced gut microbiota modification in the mouse. J Proteome Res (2008) 1.67
Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis. BMC Microbiol (2008) 1.56
Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab (2012) 1.55
Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J (2009) 1.43
Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol (2008) 1.42
A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome. Dig Dis Sci (2009) 1.39
Marine metagenomics: strategies for the discovery of novel enzymes with biotechnological applications from marine environments. Microb Cell Fact (2008) 1.32
Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals. FEMS Microbiol Ecol (2009) 1.31
Isolation and analysis of bacteria with antimicrobial activities from the marine sponge Haliclona simulans collected from Irish waters. Mar Biotechnol (NY) (2008) 1.30
Species variation in the fecal metabolome gives insight into differential gastrointestinal function. J Proteome Res (2007) 1.30
Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome. Environ Microbiol (2008) 1.20
Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics (2010) 1.11
Mobile genetic elements of the human gastrointestinal tract: potential for spread of antibiotic resistance genes. Gut Microbes (2013) 1.02
Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents. Front Microbiol (2011) 1.00
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome. ISME J (2012) 0.97
Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges. Appl Microbiol Biotechnol (2007) 0.97
The gut microbiome: the role of a virtual organ in the endocrinology of the host. J Endocrinol (2013) 0.95
Phylogenetic diversity and antimicrobial activities of fungi associated with Haliclona simulans isolated from Irish coastal waters. Mar Biotechnol (NY) (2008) 0.94
Degradation of 4-fluorophenol by Arthrobacter sp. strain IF1. Appl Microbiol Biotechnol (2008) 0.85
Minimum taxonomic criteria for bacterial genome sequence depositions and announcements. J Microbiol Methods (2012) 0.83
Accessing the mobile metagenome of the human gut microbiota. Mol Biosyst (2007) 0.81
The contribution of 'omic'-based approaches to the study of enhanced biological phosphorus removal microbiology. FEMS Microbiol Ecol (2009) 0.79
Mining the human gut microbiome for novel stress resistance genes. Gut Microbes (2012) 0.79
A robust plate assay for detection of extracellular microbial protease activity in metagenomic screens and pure cultures. J Microbiol Methods (2012) 0.78
Bounds on the distribution of the number of gaps when circles and lines are covered by fragments: theory and practical application to genomic and metagenomic projects. BMC Bioinformatics (2007) 0.77
Metabolic, immune, and gut microbial signals mount a systems response to Leishmania major infection. J Proteome Res (2014) 0.76
Too much fat for the gut's microbiota. Gut (2012) 0.76
Functional characterisation of Lp_2714, an EAL-domain protein from Lactobacillus plantarum. Biochem Biophys Res Commun (2011) 0.76
Inhibition of the growth of Bacillus subtilis DSM10 by a newly discovered antibacterial protein from the soil metagenome. Bioengineered (2015) 0.75
Current functional metagenomic approaches only expand the existing protease sequence space, but does not presently add any novelty to it. Curr Microbiol (2014) 0.75
Isolation of novel bacteria able to degrade alpha-halocarboxylic acids by enrichment from environmental samples. Chemosphere (2005) 0.75
Characterization of the electrochemical behavior of gastrointestinal fluids using a multielectrode sensor probe. IEEE Trans Biomed Eng (2011) 0.75
Isolation and characterization of a diverse group of phenylacetic acid degrading microorganisms from pristine soil. Chemosphere (2005) 0.75