PubRank

Joakim Lundeberg

Author PubWeight™ 142.97‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genetic evidence for an East Asian origin of domestic dogs. Science 2002 7.25
2 A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics 2005 7.13
3 The Norway spruce genome sequence and conifer genome evolution. Nature 2013 4.74
4 A detailed picture of the origin of the Australian dingo, obtained from the study of mitochondrial DNA. Proc Natl Acad Sci U S A 2004 3.67
5 p53 suppresses the self-renewal of adult neural stem cells. Development 2006 3.35
6 NRAS and BRAF mutations in melanoma tumours in relation to clinical characteristics: a study based on mutation screening by pyrosequencing. Melanoma Res 2006 3.32
7 mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Mol Biol Evol 2009 3.23
8 Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res 2004 3.02
9 Defining the transcriptome and proteome in three functionally different human cell lines. Mol Syst Biol 2010 3.00
10 Generations of sequencing technologies. Genomics 2008 2.64
11 A hypoxic niche regulates glioblastoma stem cells through hypoxia inducible factor 2 alpha. Brain 2010 2.49
12 The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res 2004 2.33
13 The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures. Electrophoresis 2005 2.12
14 A Populus EST resource for plant functional genomics. Proc Natl Acad Sci U S A 2004 2.04
15 Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing. PLoS One 2010 2.04
16 Increased throughput by parallelization of library preparation for massive sequencing. PLoS One 2010 2.00
17 Gene expression in autumn leaves. Plant Physiol 2003 1.91
18 Classification of DNA sequences using Bloom filters. Bioinformatics 2010 1.87
19 A transcriptional timetable of autumn senescence. Genome Biol 2004 1.70
20 Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. Plant J 2004 1.59
21 Dog Y chromosomal DNA sequence: identification, sequencing and SNP discovery. BMC Genet 2006 1.43
22 Genome wide gene amplifications and deletions in Plasmodium falciparum. Mol Biochem Parasitol 2007 1.37
23 Large scale library generation for high throughput sequencing. PLoS One 2011 1.31
24 Genome-wide profiling of populus small RNAs. BMC Genomics 2009 1.28
25 Expression profiling of adrenocortical neoplasms suggests a molecular signature of malignancy. Surgery 2005 1.23
26 Extensive linkage disequilibrium in small human populations in Eurasia. Am J Hum Genet 2002 1.20
27 Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues. Mol Cell Proteomics 2003 1.15
28 Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis. MBio 2013 1.15
29 Adenosine kinase deficiency disrupts the methionine cycle and causes hypermethioninemia, encephalopathy, and abnormal liver function. Am J Hum Genet 2011 1.14
30 Automation of cDNA synthesis and labelling improves reproducibility. J Biomed Biotechnol 2009 1.13
31 Effect of infliximab on mRNA expression profiles in synovial tissue of rheumatoid arthritis patients. Arthritis Res Ther 2006 1.13
32 Competitive enzymatic reaction to control allele-specific extensions. Nucleic Acids Res 2005 1.09
33 TagGD: fast and accurate software for DNA Tag generation and demultiplexing. PLoS One 2013 1.08
34 Pyrosequencing as an alternative to single-strand conformation polymorphism analysis for detection of N-ras mutations in human melanoma metastases. Clin Chem 2002 1.07
35 Variability in synovial inflammation in rheumatoid arthritis investigated by microarray technology. Arthritis Res Ther 2006 1.07
36 The plasticity of the mammalian transcriptome. Genomics 2009 1.07
37 Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates. Gene 2004 1.04
38 Hereditary uveal melanoma: a report of a germline mutation in BAP1. Genes Chromosomes Cancer 2013 1.03
39 SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays. Nucleic Acids Res 2002 1.02
40 Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA. Nucleic Acids Res 2006 1.02
41 Flow cytometry for enrichment and titration in massively parallel DNA sequencing. Nucleic Acids Res 2009 1.01
42 Toward the single-hour high-quality genome. Annu Rev Biochem 2012 1.01
43 Common variants in human CRC genes as low-risk alleles. Eur J Cancer 2010 1.00
44 Integrated molecular portrait of non-small cell lung cancers. BMC Med Genomics 2013 0.99
45 Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. Mol Plant Microbe Interact 2004 0.99
46 Serum microarrays for large scale screening of protein levels. Mol Cell Proteomics 2005 0.98
47 High-density microwell chip for culture and analysis of stem cells. PLoS One 2009 0.98
48 Improved gap size estimation for scaffolding algorithms. Bioinformatics 2012 0.97
49 Inheritance of acquired behaviour adaptations and brain gene expression in chickens. PLoS One 2009 0.97
50 Signal pathways JNK and NF-kappaB, identified by global gene expression profiling, are involved in regulation of TNFalpha-induced mPGES-1 and COX-2 expression in gingival fibroblasts. BMC Genomics 2010 0.97
51 Transmission of stress-induced learning impairment and associated brain gene expression from parents to offspring in chickens. PLoS One 2007 0.97
52 Gene array identification of Ipf1/Pdx1-/- regulated genes in pancreatic progenitor cells. BMC Dev Biol 2007 0.97
53 The gene expression profile in the synovium as a predictor of the clinical response to infliximab treatment in rheumatoid arthritis. PLoS One 2010 0.96
54 Laser-assisted cell microdissection using the PALM system. Methods Mol Biol 2005 0.95
55 Sun-induced nonsynonymous p53 mutations are extensively accumulated and tolerated in normal appearing human skin. J Invest Dermatol 2010 0.94
56 MC1R variation and melanoma risk in the Swedish population in relation to clinical and pathological parameters. Pigment Cell Melanoma Res 2008 0.92
57 Molecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation. Biochim Biophys Acta 2002 0.92
58 Genetic tumor archeology: microdissection and genetic heterogeneity in squamous and basal cell carcinoma. Mutat Res 2005 0.91
59 Transcriptional profiling enables molecular classification of adrenocortical tumours. Eur J Endocrinol 2009 0.91
60 BESST--efficient scaffolding of large fragmented assemblies. BMC Bioinformatics 2014 0.91
61 Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits. BMC Genomics 2007 0.90
62 Global gene expression analyses of hematopoietic stem cell-like cell lines with inducible Lhx2 expression. BMC Genomics 2006 0.90
63 Transcriptional profiling of melanocytes from patients with vitiligo vulgaris. Pigment Cell Melanoma Res 2008 0.90
64 Gene expression profiles in paired gingival biopsies from periodontitis-affected and healthy tissues revealed by massively parallel sequencing. PLoS One 2012 0.90
65 Escherichia coli single-stranded DNA-binding protein, a molecular tool for improved sequence quality in pyrosequencing. Electrophoresis 2002 0.90
66 Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res 2003 0.90
67 Scalable transcriptome preparation for massive parallel sequencing. PLoS One 2011 0.89
68 Mutation spectra of epidermal p53 clones adjacent to basal cell carcinoma and squamous cell carcinoma. Exp Dermatol 2004 0.89
69 Gene expression analysis by signature pyrosequencing. Gene 2002 0.88
70 Expression profiling of signature gene sets with trinucleotide threading. Genomics 2007 0.88
71 Activated paper surfaces for the rapid hybridization of DNA through capillary transport. Anal Chem 2012 0.88
72 Analysis of transcript and protein overlap in a human osteosarcoma cell line. BMC Genomics 2010 0.88
73 Stepping stones in DNA sequencing. Biotechnol J 2012 0.87
74 Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads. Hum Mutat 2008 0.87
75 In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines. PLoS One 2010 0.86
76 Comparative analysis of a 3' end tag PCR and a linear RNA amplification approach for microarray analysis. J Biotechnol 2006 0.86
77 Arrayed identification of DNA signatures. Expert Rev Mol Diagn 2007 0.86
78 Microarray-based AMASE as a novel approach for mutation detection. Mutat Res 2004 0.86
79 Tag-array based HPV genotyping by competitive hybridization and extension. J Virol Methods 2005 0.85
80 Global gene expression analysis in time series following N-acetyl L-cysteine induced epithelial differentiation of human normal and cancer cells in vitro. BMC Cancer 2005 0.85
81 Genetic mosaicism in basal cell carcinoma. Exp Dermatol 2005 0.84
82 Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing. Sci Rep 2013 0.84
83 Comparison of PrASE and Pyrosequencing for SNP Genotyping. BMC Genomics 2006 0.83
84 Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs. BMC Genomics 2012 0.83
85 The mutagenic effect of ultraviolet-A1 on human skin demonstrated by sequencing the p53 gene in single keratinocytes. Photodermatol Photoimmunol Photomed 2002 0.82
86 Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method. BMC Neurosci 2005 0.82
87 Gene expression analysis of human epidermal keratinocytes after N-acetyl L-cysteine treatment demonstrates cell cycle arrest and increased differentiation. Pathobiology 2005 0.82
88 Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci 2007 0.81
89 Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana. BMC Biotechnol 2005 0.81
90 Improving reliability and performance of DNA microarrays. Expert Rev Mol Diagn 2006 0.80
91 Visual DNA -- identification of DNA sequence variations by bead trapping. Genomics 2007 0.80
92 Detection of MC1R polymorphisms with protease-mediated allele-specific extension as an alternative to direct sequencing. Clin Chem 2005 0.80
93 Visual DNA as a diagnostic tool. Electrophoresis 2009 0.80
94 Catalog of gene expression in adult neural stem cells and their in vivo microenvironment. Exp Cell Res 2006 0.79
95 The role of p53 codon 72 and human papilloma virus status of cutaneous squamous cell carcinoma in the Swedish population. Acta Derm Venereol 2004 0.79
96 A brief history of genetic variation analysis. Biotechniques 2002 0.79
97 Amplification of mRNA populations by a cDNA tag strategy. Biotechniques 2004 0.79
98 Identification of candidate SNPs for drug induced toxicity from differentially expressed genes in associated tissues. Gene 2012 0.79
99 Visual detection of DNA on paper chips. Anal Chem 2014 0.79
100 Microarray-based resequencing by apyrase-mediated allele-specific extension. Electrophoresis 2003 0.78
101 Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing. BMC Genomics 2010 0.78
102 High expression of glycolytic and pigment proteins is associated with worse clinical outcome in stage III melanoma. Melanoma Res 2013 0.78
103 Single cell gene mutation analysis using laser-assisted microdissection of tissue sections. Methods Enzymol 2002 0.77
104 Signaling pathways involved in the regulation of TNFα-induced toll-like receptor 2 expression in human gingival fibroblasts. Cytokine 2012 0.77
105 The Chironomus tentans genome sequence and the organization of the Balbiani ring genes. BMC Genomics 2014 0.76
106 Epidermal growth factor (EGF) withdrawal masks gene expression differences in the study of pituitary adenylate cyclase-activating polypeptide (PACAP) activation of primary neural stem cell proliferation. BMC Neurosci 2005 0.76
107 Toward pyrosequencing on surface-attached genetic material by use of DNA-binding luciferase fusion proteins. Anal Biochem 2004 0.76
108 Expression analysis of growth and energy regulation-associated genes in two divergent chicken strains. Ann N Y Acad Sci 2005 0.76
109 Rapid flow-sorting to simultaneously resolve multiplex massively parallel sequencing products. Sci Rep 2011 0.75
110 Microarray analysis using disiloxyl 70mer oligonucleotides. Nucleic Acids Res 2008 0.75
111 Translational database selection and multiplexed sequence capture for up front filtering of reliable breast cancer biomarker candidates. PLoS One 2011 0.75
112 Forensic informativity of ~3000 bp of coding sequence of domestic dog mtDNA. J Forensic Sci 2014 0.75
113 Shotgun sequencing and microarray analysis of RDA transcripts. Gene 2003 0.75
114 Nanopore arrays in a silicon membrane for parallel single-molecule detection: DNA translocation. Nanotechnology 2015 0.75
115 Validation of whole genome amplification for analysis of the p53 tumor suppressor gene in limited amounts of tumor samples. Biochem Biophys Res Commun 2012 0.75
116 Vascular gene expression in atherosclerotic plaque-prone regions analyzed by representational difference analysis. Pathobiology 2004 0.75
117 Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep 2017 0.75