Published in Genome Res on October 01, 2004
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell (2004) 7.11
A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell (2007) 3.85
NINJA connects the co-repressor TOPLESS to jasmonate signalling. Nature (2010) 3.23
Recombinational cloning with plant gateway vectors. Plant Physiol (2007) 1.92
Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants. Proc Natl Acad Sci U S A (2012) 1.90
Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet (2011) 1.79
Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol (2005) 1.76
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell (2007) 1.75
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform. Nucleic Acids Res (2007) 1.72
Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition. Plant Cell (2007) 1.64
Ethylene interacts with abscisic acid to regulate endosperm rupture during germination: a comparative approach using Lepidium sativum and Arabidopsis thaliana. Plant Cell (2009) 1.59
Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. Plant Cell (2011) 1.56
UTILLdb, a Pisum sativum in silico forward and reverse genetics tool. Genome Biol (2008) 1.56
A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol (2005) 1.55
Arabidopsis GLUTATHIONE REDUCTASE1 plays a crucial role in leaf responses to intracellular hydrogen peroxide and in ensuring appropriate gene expression through both salicylic acid and jasmonic acid signaling pathways. Plant Physiol (2010) 1.55
Arabidopsis LTPG is a glycosylphosphatidylinositol-anchored lipid transfer protein required for export of lipids to the plant surface. Plant Cell (2009) 1.51
Oviposition by pierid butterflies triggers defense responses in Arabidopsis. Plant Physiol (2006) 1.51
Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol (2009) 1.49
Germline-transmitted genome editing in Arabidopsis thaliana Using TAL-effector-nucleases. PLoS One (2015) 1.44
A major role of the MEKK1-MKK1/2-MPK4 pathway in ROS signalling. Mol Plant (2009) 1.41
Physiological roles of plant glycoside hydrolases. Planta (2007) 1.37
The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiol (2005) 1.35
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol (2009) 1.33
Insect oral secretions suppress wound-induced responses in Arabidopsis. J Exp Bot (2011) 1.27
Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinformatics (2008) 1.27
RNA interference identifies a calcium-dependent protein kinase involved in Medicago truncatula root development. Plant Cell (2005) 1.26
Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis. Nature (2012) 1.25
The Arabidopsis abscisic acid catabolic gene CYP707A2 plays a key role in nitrate control of seed dormancy. Plant Physiol (2008) 1.24
Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise. Plant Cell (2009) 1.24
Targeted degradation of abscisic acid receptors is mediated by the ubiquitin ligase substrate adaptor DDA1 in Arabidopsis. Plant Cell (2014) 1.23
Systems approaches to identifying gene regulatory networks in plants. Annu Rev Cell Dev Biol (2008) 1.21
ATM-mediated transcriptional and developmental responses to gamma-rays in Arabidopsis. PLoS One (2007) 1.20
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Plant Physiol (2011) 1.17
Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis. Mol Biol Cell (2006) 1.17
Geminiviruses subvert ubiquitination by altering CSN-mediated derubylation of SCF E3 ligase complexes and inhibit jasmonate signaling in Arabidopsis thaliana. Plant Cell (2011) 1.16
Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells. Plant Physiol (2007) 1.15
Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiol (2005) 1.15
Physiological and transcriptomic aspects of urea uptake and assimilation in Arabidopsis plants. Plant Physiol (2008) 1.13
Arabidopsis roots and shoots show distinct temporal adaptation patterns toward nitrogen starvation. Plant Physiol (2011) 1.13
A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Plant Cell (2012) 1.12
Light-induced acclimation of the Arabidopsis chlorina1 mutant to singlet oxygen. Plant Cell (2013) 1.11
Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Mol Syst Biol (2009) 1.09
Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. BMC Plant Biol (2009) 1.07
Phospholipase D activation is an early component of the salicylic acid signaling pathway in Arabidopsis cell suspensions. Plant Physiol (2009) 1.07
DONGLE and DEFECTIVE IN ANTHER DEHISCENCE1 lipases are not essential for wound- and pathogen-induced jasmonate biosynthesis: redundant lipases contribute to jasmonate formation. Plant Physiol (2010) 1.06
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation. Plant Cell (2009) 1.06
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics (2007) 1.06
Establishment of the winter-annual growth habit via FRIGIDA-mediated histone methylation at FLOWERING LOCUS C in Arabidopsis. Plant Cell (2009) 1.06
Mutations in the Arabidopsis homolog of LST8/GβL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days. Plant Cell (2012) 1.05
New gateways to discovery. Plant Physiol (2007) 1.05
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination. Plant Physiol (2012) 1.05
An Arabidopsis GluTR binding protein mediates spatial separation of 5-aminolevulinic acid synthesis in chloroplasts. Plant Cell (2011) 1.04
Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming. BMC Plant Biol (2009) 1.03
Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses. BMC Plant Biol (2012) 1.03
Regulation of seed germination in the close Arabidopsis relative Lepidium sativum: a global tissue-specific transcript analysis. Plant Physiol (2011) 1.02
Overproduction of the membrane-bound receptor-like protein kinase 1, RPK1, enhances abiotic stress tolerance in Arabidopsis. J Biol Chem (2010) 1.00
An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiol (2008) 1.00
Differential regulation of root arginine catabolism and polyamine metabolism in clubroot-susceptible and partially resistant Arabidopsis genotypes. Plant Physiol (2008) 1.00
Y3IP1, a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem I assembly of tobacco and Arabidopsis. Plant Cell (2010) 0.99
GABA accumulation causes cell elongation defects and a decrease in expression of genes encoding secreted and cell wall-related proteins in Arabidopsis thaliana. Plant Cell Physiol (2011) 0.99
Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. BMC Genomics (2007) 0.99
Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. Plant Cell (2012) 0.99
Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome. BMC Genomics (2007) 0.98
Flexible tools for gene expression and silencing in tomato. Plant Physiol (2009) 0.97
A role for the root cap in root branching revealed by the non-auxin probe naxillin. Nat Chem Biol (2012) 0.97
Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity. Plant Physiol (2008) 0.97
Reverse genetics in eukaryotes. Biol Cell (2010) 0.97
Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme. RNA (2009) 0.96
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One (2011) 0.95
Nighttime sugar starvation orchestrates gibberellin biosynthesis and plant growth in Arabidopsis. Plant Cell (2013) 0.95
ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance. BMC Plant Biol (2008) 0.94
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. Plant Cell (2008) 0.94
Tobacco rattle virus-based virus-induced gene silencing in Nicotiana benthamiana. Nat Protoc (2014) 0.94
TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. BMC Genomics (2010) 0.94
Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14. J Exp Bot (2011) 0.93
Perspectives on Systematic Analyses of Gene Function in Arabidopsis thaliana: New Tools, Topics and Trends. Curr Genomics (2011) 0.92
Genetic variation suggests interaction between cold acclimation and metabolic regulation of leaf senescence. Plant Physiol (2006) 0.91
Characterization of the early events leading to totipotency in an Arabidopsis protoplast liquid culture by temporal transcript profiling. Plant Cell (2013) 0.91
The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. Front Plant Sci (2013) 0.90
A genome-wide and metabolic analysis determined the adaptive response of Arabidopsis cells to folate depletion induced by methotrexate. Plant Physiol (2008) 0.90
A mediator of singlet oxygen responses in Chlamydomonas reinhardtii and Arabidopsis identified by a luciferase-based genetic screen in algal cells. Plant Cell (2013) 0.89
A shift toward smaller cell size via manipulation of cell cycle gene expression acts to smoothen Arabidopsis leaf shape. Plant Physiol (2011) 0.89
Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics. BMC Genomics (2009) 0.89
A light-regulated genetic module was recruited to carpel development in Arabidopsis following a structural change to SPATULA. Plant Cell (2012) 0.88
Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity. Funct Integr Genomics (2013) 0.87
Lactococcus lactis, an alternative system for functional expression of peripheral and intrinsic Arabidopsis membrane proteins. PLoS One (2010) 0.86
Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana. BMC Plant Biol (2012) 0.85
Exploration of plant genomes in the FLAGdb++ environment. Plant Methods (2011) 0.85
Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics (2012) 0.84
Natural and artificial mutants as valuable resources for functional genomics and molecular breeding. Int J Biol Sci (2010) 0.83
Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme. PLoS One (2015) 0.82
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme. Nucleic Acids Res (2006) 0.82
Hypersensitive to red and blue 1 and its modification by protein phosphatase 7 are implicated in the control of Arabidopsis stomatal aperture. PLoS Genet (2012) 0.81
A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China. Philos Trans R Soc Lond B Biol Sci (2007) 0.81
Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana. BMC Biotechnol (2005) 0.81
Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays. Plant Methods (2012) 0.80
Singlet Oxygen-Induced Cell Death in Arabidopsis under High-Light Stress Is Controlled by OXI1 Kinase. Plant Physiol (2016) 0.80
An efficient RNA interference screening strategy for gene functional analysis. BMC Genomics (2012) 0.79
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nat Commun (2015) 0.79
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