Published in Genetics on December 18, 2006
Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics (2011) 3.42
The QTN program and the alleles that matter for evolution: all that's gold does not glitter. Evolution (2011) 2.23
Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers. Genetics (2008) 2.17
Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiol (2011) 2.06
The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell (2007) 1.99
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet (2010) 1.91
Major flowering time gene, flowering locus C, regulates seed germination in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2009) 1.87
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J (2007) 1.74
Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast. Genetics (2008) 1.68
Genetic dissection of barley morphology and development. Plant Physiol (2010) 1.61
Genetic basis of heterosis for growth-related traits in Arabidopsis investigated by testcross progenies of near-isogenic lines reveals a significant role of epistasis. Genetics (2007) 1.43
QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One (2009) 1.28
A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans. Nucleic Acids Res (2009) 1.24
High-throughput computer vision introduces the time axis to a quantitative trait map of a plant growth response. Genetics (2013) 1.22
QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet (2010) 1.20
Dissection of QTL effects for root traits using a chromosome arm-specific mapping population in bread wheat. Theor Appl Genet (2010) 1.20
B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol (2011) 1.18
Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genet (2009) 1.17
Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biol (2008) 1.15
RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and -susceptible alleles. DNA Res (2011) 1.10
Fructose sensitivity is suppressed in Arabidopsis by the transcription factor ANAC089 lacking the membrane-bound domain. Proc Natl Acad Sci U S A (2011) 1.07
Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations. PLoS Genet (2012) 1.06
Resistance loci affecting distinct stages of fungal pathogenesis: use of introgression lines for QTL mapping and characterization in the maize--Setosphaeria turcica pathosystem. BMC Plant Biol (2010) 1.06
Gene transposition causing natural variation for growth in Arabidopsis thaliana. PLoS Genet (2010) 1.02
Marker-based estimation of heritability in immortal populations. Genetics (2014) 0.99
The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background. PLoS Genet (2013) 0.98
Unraveling epistasis with triple testcross progenies of near-isogenic lines. Genetics (2008) 0.97
Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy. PLoS One (2011) 0.97
High-Resolution Genotyping of Wild Barley Introgression Lines and Fine-Mapping of the Threshability Locus thresh-1 Using the Illumina GoldenGate Assay. G3 (Bethesda) (2011) 0.95
Genetic dissection of maize phenology using an intraspecific introgression library. BMC Plant Biol (2011) 0.95
Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana. Plant Cell (2015) 0.95
Mapping quantitative trait loci affecting Arabidopsis thaliana seed morphology features extracted computationally from images. G3 (Bethesda) (2013) 0.94
Efficient QTL detection for nonhost resistance in wild lettuce: backcross inbred lines versus F(2) population. Theor Appl Genet (2008) 0.93
Differential detection of genetic Loci underlying stem and root lignin content in Populus. PLoS One (2010) 0.92
A QTL Study for Regions Contributing to Arabidopsis thaliana Root Skewing on Tilted Surfaces. G3 (Bethesda) (2011) 0.90
Natural variation reveals that intracellular distribution of ELF3 protein is associated with function in the circadian clock. Elife (2014) 0.90
Power and false-positive rate in QTL detection with near-isogenic line libraries. Heredity (Edinb) (2010) 0.90
A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Theor Appl Genet (2010) 0.89
Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits. BMC Genomics (2013) 0.88
Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics. Plant Physiol (2013) 0.88
Exploring the natural variation for seedling traits and their link with seed dimensions in tomato. PLoS One (2012) 0.88
Transcriptome Analysis of Brassica rapa Near-Isogenic Lines Carrying Clubroot-Resistant and -Susceptible Alleles in Response to Plasmodiophora brassicae during Early Infection. Front Plant Sci (2016) 0.87
Genetic mechanisms underlying yield potential in the rice high-yielding cultivar Takanari, based on reciprocal chromosome segment substitution lines. BMC Plant Biol (2014) 0.85
Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana. Front Genet (2013) 0.84
The use of natural genetic diversity in the understanding of metabolic organization and regulation. Front Plant Sci (2011) 0.84
A Chromosome Segment Substitution Library of Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits. PLoS One (2015) 0.83
Environmental memory from a circadian oscillator: the Arabidopsis thaliana clock differentially integrates perception of photic vs. thermal entrainment. Genetics (2011) 0.83
Genetic architecture of natural variation of telomere length in Arabidopsis thaliana. Genetics (2014) 0.82
General combining ability of most yield-related traits had a genetic basis different from their corresponding traits per se in a set of maize introgression lines. Genetica (2013) 0.82
Detection of nitrogen deficiency QTL in juvenile wild barley introgression lines growing in a hydroponic system. BMC Genet (2012) 0.82
Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana. BMC Plant Biol (2015) 0.81
Selection strategies for the development of maize introgression populations. PLoS One (2014) 0.81
A genetic approach of wine yeast fermentation capacity in nitrogen-starvation reveals the key role of nitrogen signaling. BMC Genomics (2014) 0.80
Natural variation in the expression of ORGANIC CATION TRANSPORTER 1 affects root length responses to cadaverine in Arabidopsis. J Exp Bot (2014) 0.80
Mapping the genetic basis of symbiotic variation in legume-rhizobium interactions in Medicago truncatula. G3 (Bethesda) (2012) 0.80
Quantitative trait locus (QTL) mapping reveals a role for unstudied genes in Aspergillus virulence. PLoS One (2011) 0.80
Stable carbon isotope discrimination is under genetic control in the C4 species maize with several genomic regions influencing trait expression. Plant Physiol (2013) 0.80
Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis. Plant Physiol (2016) 0.79
Identification of a major QTL that alters flowering time at elevated [CO(2)] in Arabidopsis thaliana. PLoS One (2012) 0.78
Multivariate genetic analysis of plant responses to water deficit and high temperature revealed contrasting adaptive strategies. J Exp Bot (2014) 0.78
Detection and characterization of epistasis between QTLs on plant height in rice using single segment substitution lines. Breed Sci (2015) 0.78
Testing models for the leaf economics spectrum with leaf and whole-plant traits in Arabidopsis thaliana. AoB Plants (2015) 0.77
A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification. G3 (Bethesda) (2016) 0.77
Mendelizing all Components of a Pyramid of Three Yield QTL in Tomato. Front Plant Sci (2015) 0.76
Mapping in the era of sequencing: high density genotyping and its application for mapping TYLCV resistance in Solanum pimpinellifolium. BMC Genomics (2014) 0.75
Identification of quantitative trait loci controlling high Calcium response in Arabidopsis thaliana. PLoS One (2014) 0.75
Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development. PLoS Genet (2016) 0.75
QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.). Front Plant Sci (2017) 0.75
Genetic Dissection of Morphometric Traits Reveals that Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3 (Bethesda) (2017) 0.75
Naturally occurring genetic variation in Arabidopsis thaliana. Annu Rev Plant Biol (2004) 5.52
An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics (1995) 5.32
Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J (1998) 4.98
Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends Plant Sci (2000) 3.98
Mapping and analysis of quantitative trait loci in experimental populations. Nat Rev Genet (2002) 3.98
Analysing complex genetic traits with chromosome substitution strains. Nat Genet (2000) 3.92
Analysis of natural allelic variation at flowering time loci in the Landsberg erecta and Cape Verde Islands ecotypes of Arabidopsis thaliana. Genetics (1998) 3.65
Genetic dissection of complex traits with chromosome substitution strains of mice. Science (2004) 3.57
Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana. Proc Natl Acad Sci U S A (1999) 3.20
Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics (2003) 2.92
Theoretical basis of the Beavis effect. Genetics (2003) 2.90
Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiol (2005) 2.70
Regulation of flowering time by FVE, a retinoblastoma-associated protein. Nat Genet (2004) 2.67
Accuracy of mapping quantitative trait loci in autogamous species. Theor Appl Genet (1992) 2.38
Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science (2004) 2.37
Natural allelic variation identifies new genes in the Arabidopsis circadian system. Plant J (1999) 2.24
Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana. Genetics (2003) 1.92
Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. Theor Appl Genet (2005) 1.84
Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics (2002) 1.84
Quantitative trait locus analysis using recombinant inbred intercrosses: theoretical and empirical considerations. Genetics (2005) 1.80
Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics (2005) 1.67
Review of statistical methods for QTL mapping in experimental crosses. Lab Anim (NY) (2001) 1.66
Quantitative traits in plants: beyond the QTL. Trends Genet (2003) 1.64
Quantitative trait locus mapping in natural populations: progress, caveats and future directions. Mol Ecol (2005) 1.60
The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiol (2003) 1.56
Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant Cell Environ (2006) 1.49
The genetics of phytate and phosphate accumulation in seeds and leaves of Arabidopsis thaliana, using natural variation. Theor Appl Genet (2002) 1.26
Development of candidate introgression lines using an exotic barley accession ( Hordeum vulgare ssp. spontaneum) as donor. Theor Appl Genet (2004) 1.21
QTL analysis of yield traits in an advanced backcross population derived from a cultivated Andean x wild common bean (Phaseolus vulgaris L.) cross. Theor Appl Genet (2006) 1.20
Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo. Theor Appl Genet (2006) 1.16
Complex genetic architecture revealed by analysis of high-density lipoprotein cholesterol in chromosome substitution strains and F2 crosses. Genetics (2006) 1.13
STAIRS: a new genetic resource for functional genomic studies of Arabidopsis. Plant J (2002) 1.13
Genomic approaches to analyzing natural variation in Arabidopsis thaliana. Curr Opin Genet Dev (2003) 1.12
More QTL for flowering time revealed by substitution lines in brassica oleracea Heredity (Edinb) (1999) 1.11
Epistasis and genotype-environment interaction for quantitative trait loci affecting flowering time in Arabidopsis thaliana. Genetica (2005) 1.05
The development of lettuce backcross inbred lines (BILs) for exploitation of the Lactuca saligna (wild lettuce) germplasm. Theor Appl Genet (2004) 1.04
Detection of QTLs for grain protein content in durum wheat. Theor Appl Genet (2006) 0.97
Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet (2011) 6.59
Naturally occurring genetic variation in Arabidopsis thaliana. Annu Rev Plant Biol (2004) 5.52
GENETIC CONTROL OF FLOWERING TIME IN ARABIDOPSIS. Annu Rev Plant Physiol Plant Mol Biol (1998) 4.76
Seed dormancy and germination. Curr Opin Plant Biol (2002) 4.30
The genetics of plant metabolism. Nat Genet (2006) 4.28
Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol (2008) 3.70
Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc Natl Acad Sci U S A (2006) 3.25
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proc Natl Acad Sci U S A (2007) 2.94
What has natural variation taught us about plant development, physiology, and adaptation? Plant Cell (2009) 2.94
Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics (2003) 2.92
Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiol (2005) 2.70
Regulation of flowering time by FVE, a retinoblastoma-associated protein. Nat Genet (2004) 2.67
System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nat Genet (2009) 2.20
Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol (2004) 2.10
The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell (2007) 1.99
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J (2006) 1.93
Quantitative trait locus analysis of growth-related traits in a new Arabidopsis recombinant inbred population. Plant Physiol (2004) 1.90
A fortunate choice: the history of Arabidopsis as a model plant. Nat Rev Genet (2002) 1.82
New Arabidopsis recombinant inbred line populations genotyped using SNPWave and their use for mapping flowering-time quantitative trait loci. Genetics (2005) 1.79
ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina. Plant J (2005) 1.78
PEP1 regulates perennial flowering in Arabis alpina. Nature (2009) 1.78
Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol (2006) 1.76
Genetic relationships within Brassica rapa as inferred from AFLP fingerprints. Theor Appl Genet (2005) 1.66
Natural genetic variation of Arabidopsis thaliana is geographically structured in the Iberian peninsula. Genetics (2008) 1.58
The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. Mol Ecol (2010) 1.58
Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways. Proc Natl Acad Sci U S A (2010) 1.57
Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J (2002) 1.54
Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J (2010) 1.52
Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proc Natl Acad Sci U S A (2011) 1.44
Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds. Plant Cell Physiol (2011) 1.44
Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant Cell Environ (2008) 1.39
Vacuolar invertase regulates elongation of Arabidopsis thaliana roots as revealed by QTL and mutant analysis. Proc Natl Acad Sci U S A (2006) 1.37
Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol (2005) 1.33
DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana. Mol Ecol (2011) 1.31
Environmental regulation of flowering. Int J Dev Biol (2005) 1.29
Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa. J Exp Bot (2007) 1.28
Seed dormancy and germination. Arabidopsis Book (2008) 1.27
Altitudinal and climatic adaptation is mediated by flowering traits and FRI, FLC, and PHYC genes in Arabidopsis. Plant Physiol (2011) 1.23
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol (2013) 1.23
Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nat Genet (2010) 1.22
Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana. PLoS One (2013) 1.19
The role of cryptochrome 2 in flowering in Arabidopsis. Plant Physiol (2003) 1.18
Characterization of mutants with reduced seed dormancy at two novel rdo loci and a further characterization of rdo1 and rdo2 in Arabidopsis. Physiol Plant (2002) 1.17
Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley. Proc Natl Acad Sci U S A (2013) 1.15
Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biol (2008) 1.15
Plants under continuous light. Trends Plant Sci (2011) 1.14
The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. Elife (2013) 1.12
In situ staining of activities of enzymes involved in carbohydrate metabolism in plant tissues. J Exp Bot (2002) 1.12
Combined genetic and modeling approaches reveal that epidermal cell area and number in leaves are controlled by leaf and plant developmental processes in Arabidopsis. Plant Physiol (2008) 1.11
Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. Proc Natl Acad Sci U S A (2011) 1.10
From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development. Int J Dev Biol (2005) 1.10
Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. New Phytol (2009) 1.07
A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations. J Exp Bot (2009) 1.06
The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis. Plant Cell (2010) 1.06
Demographic and genetic patterns of variation among populations of Arabidopsis thaliana from contrasting native environments. PLoS One (2009) 1.04
Host responses in life-history traits and tolerance to virus infection in Arabidopsis thaliana. PLoS Pathog (2008) 1.02
Characterization of green seed, an enhancer of abi3-1 in Arabidopsis that affects seed longevity. Plant Physiol (2003) 1.02
Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2006) 1.02
The Cape Verde Islands allele of cryptochrome 2 enhances cotyledon unfolding in the absence of blue light in Arabidopsis. Plant Physiol (2003) 1.01
Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3). New Phytol (2009) 1.01
A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis. BMC Plant Biol (2009) 1.00
Genetic basis of adaptation in Arabidopsis thaliana: local adaptation at the seed dormancy QTL DOG1. Evolution (2012) 1.00
Temporal analysis of natural variation for the rate of leaf production and its relationship with flowering initiation in Arabidopsis thaliana. J Exp Bot (2010) 0.99
Quantitative trait loci for glucosinolate accumulation in Brassica rapa leaves. New Phytol (2008) 0.98
The Arabidopsis GSQ5/DOG1 Cvi allele is induced by the ABA-mediated sugar signalling pathway, and enhances sugar sensitivity by stimulating ABI4 expression. Plant J (2008) 0.98
The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background. PLoS Genet (2013) 0.98
The relationship of within-host multiplication and virulence in a plant-virus system. PLoS One (2007) 0.98
Natural variation for seed longevity and seed dormancy are negatively correlated in Arabidopsis. Plant Physiol (2012) 0.97