Ontology-based annotation and query of tissue microarray data.

Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinformatics (2009) 6.31

The open biomedical annotator. Summit on Translat Bioinforma (2009) 4.19

Biomedical ontologies in action: role in knowledge management, data integration and decision support. Yearb Med Inform (2008) 3.96

Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics (2007) 2.03

Accessing and integrating data and knowledge for biomedical research. Yearb Med Inform (2008) 1.98

The Stanford Tissue Microarray Database. Nucleic Acids Res (2007) 1.96

In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Hum Mutat (2010) 1.81

UMLS-Query: a perl module for querying the UMLS. AMIA Annu Symp Proc (2008) 1.10

Evaluation of a large-scale biomedical data annotation initiative. BMC Bioinformatics (2009) 0.93

Automated semantic indexing of figure captions to improve radiology image retrieval. J Am Med Inform Assoc (2009) 0.90

Evaluation of semantic-based information retrieval methods in the autism phenotype domain. AMIA Annu Symp Proc (2011) 0.87

The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia. PLoS One (2016) 0.77

Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Cancer Inform (2009) 0.77

Identifying inconsistencies in SNOMED CT problem lists using structural indicators. AMIA Annu Symp Proc (2013) 0.75

Annotating breast cancer microarray samples using ontologies. AMIA Annu Symp Proc (2008) 0.75

Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Summit on Translat Bioinforma (2009) 0.75

The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res (2004) 25.99

NCI Thesaurus: using science-based terminology to integrate cancer research results. Stud Health Technol Inform (2004) 4.61

Text mining and ontologies in biomedicine: making sense of raw text. Brief Bioinform (2005) 3.36

Tissue microarray: a new technology for amplification of tissue resources. Cancer J (2001) 3.19

Software tools for high-throughput analysis and archiving of immunohistochemistry staining data obtained with tissue microarrays. Am J Pathol (2002) 3.11

Tissue microarrays for predictive molecular pathology. J Clin Pathol (2002) 1.65

BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res (2009) 10.58

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res (2011) 6.59

PharmGKB: the Pharmacogenetics Knowledge Base. Nucleic Acids Res (2002) 6.40

Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinformatics (2009) 6.31

An integrative approach for in silico glioma research. IEEE Trans Biomed Eng (2010) 4.55

The open biomedical annotator. Summit on Translat Bioinforma (2009) 4.19

National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. OMICS (2006) 3.96

The caBIG annotation and image Markup project. J Digit Imaging (2009) 3.64

The SAGE Guideline Model: achievements and overview. J Am Med Inform Assoc (2007) 3.22

Non-small cell lung cancer: identifying prognostic imaging biomarkers by leveraging public gene expression microarray data--methods and preliminary results. Radiology (2012) 2.98

Creating mappings for ontologies in biomedicine: simple methods work. AMIA Annu Symp Proc (2009) 2.93

Comparison of concept recognizers for building the Open Biomedical Annotator. BMC Bioinformatics (2009) 2.83

Protégé-2000: an open-source ontology-development and knowledge-acquisition environment. AMIA Annu Symp Proc (2003) 2.73

The ACR BI-RADS experience: learning from history. J Am Coll Radiol (2009) 2.68

Breast cancer on the world wide web: cross sectional survey of quality of information and popularity of websites. BMJ (2002) 2.53

AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. J Am Med Inform Assoc (2012) 2.40

MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics (2008) 2.24

WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web. Semant Web (2013) 2.17

Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study. AMIA Annu Symp Proc (2005) 2.10

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. J Biomed Inform (2010) 2.10

Supporting the Collaborative Authoring of ICD-11 with WebProtégé. AMIA Annu Symp Proc (2010) 2.05

Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics (2007) 2.03

Dynamic reconfiguration of structural and functional connectivity across core neurocognitive brain networks with development. J Neurosci (2011) 2.00

Use of microcalcification descriptors in BI-RADS 4th edition to stratify risk of malignancy. Radiology (2007) 1.99

Protégé: a tool for managing and using terminology in radiology applications. J Digit Imaging (2007) 1.95

The Annotation and Image Mark-up project. Radiology (2009) 1.93

Toward best practices in radiology reporting. Radiology (2009) 1.84

Content-based image retrieval in radiology: current status and future directions. J Digit Imaging (2011) 1.78

MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set. Radiology (2013) 1.77

Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers. J Am Med Inform Assoc (2004) 1.75

Knowledge-based bioterrorism surveillance. Proc AMIA Symp (2002) 1.74

Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J Am Med Inform Assoc (2012) 1.73

Use of description logic classification to reason about consequences of penetrating injuries. AMIA Annu Symp Proc (2005) 1.72

A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations. AMIA Annu Symp Proc (2010) 1.68

Contextualizing heterogeneous data for integration and inference. AMIA Annu Symp Proc (2003) 1.67

OBO to OWL: a protege OWL tab to read/save OBO ontologies. Bioinformatics (2007) 1.67

The IR RadLex project: an interventional radiology lexicon--a collaborative project of the Radiological Society of North America and the Society of Interventional Radiology. J Vasc Interv Radiol (2008) 1.61

Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results. Radiology (2010) 1.59

BioPortal: ontologies and data resources with the click of a mouse. AMIA Annu Symp Proc (2008) 1.54

Building a biomedical ontology recommender web service. J Biomed Semantics (2010) 1.53

Bayesian network to predict breast cancer risk of mammographic microcalcifications and reduce number of benign biopsy results: initial experience. Radiology (2006) 1.49

The Chronus II temporal database mediator. Proc AMIA Symp (2002) 1.36

Developing biomedical ontologies collaboratively. AMIA Annu Symp Proc (2008) 1.33

Modeling guidelines for integration into clinical workflow. Stud Health Technol Inform (2004) 1.32

An ontology for PACS integration. J Digit Imaging (2006) 1.30

Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms. J Am Med Inform Assoc (2008) 1.29

Integration and publication of heterogeneous text-mined relationships on the Semantic Web. J Biomed Semantics (2011) 1.29

Prognostic PET 18F-FDG uptake imaging features are associated with major oncogenomic alterations in patients with resected non-small cell lung cancer. Cancer Res (2012) 1.28

NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Web Semant (2011) 1.27

Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Appl Ontol (2008) 1.26

Extracting subject demographic information from abstracts of randomized clinical trial reports. Stud Health Technol Inform (2007) 1.22

Enabling enrichment analysis with the Human Disease Ontology. J Biomed Inform (2011) 1.18

LesionViewer: a tool for tracking cancer lesions over time. AMIA Annu Symp Proc (2007) 1.18

Evaluating detection of an inhalational anthrax outbreak. Emerg Infect Dis (2006) 1.17

The role of informatics in health care reform. Acad Radiol (2012) 1.17

SYNCHRONUS: a reusable software module for temporal integration. Proc AMIA Symp (2002) 1.16

Application of neuroanatomical ontologies for neuroimaging data annotation. Front Neuroinform (2010) 1.16

Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex. Radiographics (2015) 1.16

Translating the Foundational Model of Anatomy into OWL. Web Semant (2008) 1.15

An ontology-neutral framework for enrichment analysis. AMIA Annu Symp Proc (2010) 1.15

Tool support to enable evaluation of the clinical response to treatment. AMIA Annu Symp Proc (2008) 1.12

The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. AMIA Annu Symp Proc (2010) 1.10

Automated drusen segmentation and quantification in SD-OCT images. Med Image Anal (2013) 1.08

Ontology development for a pharmacogenetics knowledge base. Pac Symp Biocomput (2002) 1.05

How orthogonal are the OBO Foundry ontologies? J Biomed Semantics (2011) 1.05

Ontology-based representation of simulation models of physiology. AMIA Annu Symp Proc (2006) 1.04

Current and future trends in imaging informatics for oncology. Cancer J (2011) 1.04

Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection. AMIA Annu Symp Proc (2008) 1.04

Indexing pharmacogenetic knowledge on the World Wide Web. Pharmacogenetics (2003) 1.02

FMA-RadLex: An application ontology of radiological anatomy derived from the foundational model of anatomy reference ontology. AMIA Annu Symp Proc (2008) 1.02

How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects. Web Semant (2013) 1.01

Imaging informatics: essential tools for the delivery of imaging services. Acad Radiol (2013) 1.01

Informatics in radiology: An open-source and open-access cancer biomedical informatics grid annotation and image markup template builder. Radiographics (2012) 1.00

A probabilistic expert system that provides automated mammographic-histologic correlation: initial experience. AJR Am J Roentgenol (2004) 1.00

Informatics methods to enable sharing of quantitative imaging research data. Magn Reson Imaging (2012) 0.99

Chapter 9: Analyses using disease ontologies. PLoS Comput Biol (2012) 0.98

Applications of ontology design patterns in biomedical ontologies. AMIA Annu Symp Proc (2012) 0.97

The structure of guideline recommendations: a synthesis. AMIA Annu Symp Proc (2003) 0.97

Informatics in radiology: RADTF: a semantic search-enabled, natural language processor-generated radiology teaching file. Radiographics (2010) 0.97

Using ontologies linked with geometric models to reason about penetrating injuries. Artif Intell Med (2006) 0.94

Dynamic contrast-enhanced MRI-based biomarkers of therapeutic response in triple-negative breast cancer. J Am Med Inform Assoc (2013) 0.93

Informatics in radiology: improving clinical work flow through an AIM database: a sample web-based lesion tracking application. Radiographics (2012) 0.93

An analytic framework fo space-time aberrancy detection in public health surveillance data. AMIA Annu Symp Proc (2003) 0.92

Integration of imaging signs into RadLex. J Digit Imaging (2012) 0.91

A prototype symbolic model of canonical functional neuroanatomy of the motor system. J Biomed Inform (2007) 0.90

Automated semantic indexing of figure captions to improve radiology image retrieval. J Am Med Inform Assoc (2009) 0.90

Computational neuroanatomy: ontology-based representation of neural components and connectivity. BMC Bioinformatics (2009) 0.90

Using an ontology of human anatomy to inform reasoning with geometric models. Stud Health Technol Inform (2005) 0.90

Linking ontologies with three-dimensional models of anatomy to predict the effects of penetrating injuries. Conf Proc IEEE Eng Med Biol Soc (2004) 0.89

Using a Bayesian network to predict the probability and type of breast cancer represented by microcalcifications on mammography. Stud Health Technol Inform (2004) 0.89

Use of declarative statements in creating and maintaining computer-interpretable knowledge bases for guideline-based care. AMIA Annu Symp Proc (2006) 0.89

Automated temporal tracking and segmentation of lymphoma on serial CT examinations. Med Phys (2011) 0.89

Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data. AMIA Annu Symp Proc (2008) 0.88

A framework for evidence-adaptive quality assessment that unifies guideline-based and performance-indicator approaches. Proc AMIA Symp (2002) 0.88

A bayesian network for differentiating benign from malignant thyroid nodules using sonographic and demographic features. AJR Am J Roentgenol (2011) 0.88

Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Imaging Research Group. Abdom Imaging (2015) 0.87