PubRank

Ichio Shimada

Author PubWeight™ 73.42‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases. Genes Dev 2007 1.68
2 Structural basis of the interaction between chemokine stromal cell-derived factor-1/CXCL12 and its G-protein-coupled receptor CXCR4. J Biol Chem 2009 1.60
3 Identification and characterization of the slowly exchanging pH-dependent conformational rearrangement in KcsA. J Biol Chem 2007 1.50
4 Efficacy of the β₂-adrenergic receptor is determined by conformational equilibrium in the transmembrane region. Nat Commun 2012 1.40
5 Structural basis underlying the dual gate properties of KcsA. Proc Natl Acad Sci U S A 2010 1.33
6 Structural basis of the collagen-binding mode of discoidin domain receptor 2. EMBO J 2007 1.26
7 Determination of the interface of a large protein complex by transferred cross-saturation measurements. J Mol Biol 2002 1.20
8 Collagen-binding mode of vWF-A3 domain determined by a transferred cross-saturation experiment. Nat Struct Biol 2003 1.10
9 Molecular basis of the high-affinity activation of type 1 ryanodine receptors by imperatoxin A. Biochem J 2004 1.05
10 Chondroitin sulfate E fragments enhance CD44 cleavage and CD44-dependent motility in tumor cells. Cancer Res 2008 1.05
11 NMR analyses of the Gbetagamma binding and conformational rearrangements of the cytoplasmic pore of G protein-activated inwardly rectifying potassium channel 1 (GIRK1). J Biol Chem 2010 1.01
12 NMR analyses of the interaction between CCR5 and its ligand using functional reconstitution of CCR5 in lipid bilayers. J Am Chem Soc 2010 1.01
13 Functional dynamics of deuterated β2 -adrenergic receptor in lipid bilayers revealed by NMR spectroscopy. Angew Chem Int Ed Engl 2014 1.00
14 Structural basis of the KcsA K(+) channel and agitoxin2 pore-blocking toxin interaction by using the transferred cross-saturation method. Structure 2003 0.98
15 Observation of NMR signals from proteins introduced into living mammalian cells by reversible membrane permeabilization using a pore-forming toxin, streptolysin O. J Am Chem Soc 2009 0.98
16 Utilization of methyl proton resonances in cross-saturation measurement for determining the interfaces of large protein-protein complexes. J Biomol NMR 2006 0.96
17 Channel-forming membrane permeabilization by an antibacterial protein, sapecin: determination of membrane-buried and oligomerization surfaces by NMR. J Biol Chem 2003 0.94
18 Hyaluronan recognition mode of CD44 revealed by cross-saturation and chemical shift perturbation experiments. J Biol Chem 2003 0.94
19 Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27. J Biol Chem 2005 0.94
20 Ligand-induced structural changes of the CD44 hyaluronan-binding domain revealed by NMR. J Biol Chem 2006 0.94
21 Two-state conformations in the hyaluronan-binding domain regulate CD44 adhesiveness under flow condition. Structure 2010 0.93
22 Evidence for the direct interaction of spermine with the inwardly rectifying potassium channel. J Biol Chem 2009 0.93
23 Production of isotopically labeled heterologous proteins in non-E. coli prokaryotic and eukaryotic cells. J Biomol NMR 2009 0.92
24 Quantitative characterization of Tob interactions provides the thermodynamic basis for translation termination-coupled deadenylase regulation. J Biol Chem 2010 0.91
25 The amino acids involved in the distinct carbohydrate specificities between macrophage galactose-type C-type lectins 1 and 2 (CD301a and b) of mice. Biochim Biophys Acta 2007 0.88
26 Solution structure of omega-grammotoxin SIA, a gating modifier of P/Q and N-type Ca(2+) channel. J Mol Biol 2002 0.87
27 Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses. J Biol Chem 2004 0.87
28 Functional equilibrium of the KcsA structure revealed by NMR. J Biol Chem 2012 0.86
29 NMR study of repair mechanism of DNA photolyase by FAD-induced paramagnetic relaxation enhancement. J Biol Chem 2004 0.86
30 Structural basis for the Golgi association by the pleckstrin homology domain of the ceramide trafficking protein (CERT). J Biol Chem 2012 0.86
31 Structural basis for modulation of gating property of G protein-gated inwardly rectifying potassium ion channel (GIRK) by i/o-family G protein α subunit (Gαi/o). J Biol Chem 2012 0.86
32 Structural genomics of membrane proteins. Acc Chem Res 2003 0.86
33 Functional dynamics of proteins revealed by solution NMR. Curr Opin Struct Biol 2012 0.86
34 NMR study of ligand release from asialoglycoprotein receptor under solution conditions in early endosomes. FEBS J 2012 0.85
35 NMR structure of the calponin homology domain of human IQGAP1 and its implications for the actin recognition mode. J Biomol NMR 2010 0.84
36 Theoretical analyses of the transferred cross-saturation method. J Magn Reson 2010 0.83
37 Structural basis for platelet antiaggregation by angiotensin II type 1 receptor antagonist losartan (DuP-753) via glycoprotein VI. J Med Chem 2010 0.82
38 Carbohydrate binding mechanism of the macrophage galactose-type C-type lectin 1 revealed by saturation transfer experiments. J Biol Chem 2008 0.82
39 Optimization of 13C direct detection NMR methods. J Biomol NMR 2004 0.82
40 Probing dynamics and conformational change of the GroEL-GroES complex by 13C NMR spectroscopy. J Biochem 2006 0.82
41 Nuclear magnetic resonance approaches for characterizing interactions between the bacterial chaperonin GroEL and unstructured proteins. J Biosci Bioeng 2013 0.82
42 1H, 13C and 15N backbone resonance assignments of the hyaluronan-binding domain of CD44. J Biomol NMR 2004 0.82
43 Rapid preparation of stable isotope labeled peptides that bind to target proteins by a phage library system. J Biomol NMR 2006 0.81
44 Biological role of the two overlapping poly(A)-binding protein interacting motifs 2 (PAM2) of eukaryotic releasing factor eRF3 in mRNA decay. RNA 2012 0.81
45 Backbone resonance assignments for the cytoplasmic regions of G protein-activated inwardly rectifying potassium channel 1 (GIRK1). Biomol NMR Assign 2009 0.81
46 Bead-linked proteoliposomes: a reconstitution method for nmr analyses of membrane protein-ligand interactions. J Am Chem Soc 2005 0.81
47 Amino acid selective cross-saturation method for identification of proximal residue pairs in a protein-protein complex. J Am Chem Soc 2008 0.81
48 An NMR method to study protein-protein interactions. Methods Mol Biol 2012 0.81
49 Pairwise NMR experiments for the determination of protein backbone dihedral angle Phi based on cross-correlated spin relaxation. J Biomol NMR 2007 0.80
50 Perdeuteration and methyl-selective (1)H, (13)C-labeling by using a Kluyveromyces lactis expression system. J Biomol NMR 2013 0.80
51 Atypical membrane-embedded phosphatidylinositol 3,4-bisphosphate (PI(3,4)P2)-binding site on p47(phox) Phox homology (PX) domain revealed by NMR. J Biol Chem 2012 0.80
52 Real-time assay method of lipid extraction activity. Anal Biochem 2009 0.80
53 Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography. Acta Crystallogr D Biol Crystallogr 2007 0.80
54 Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data. J Biomol NMR 2015 0.79
55 Isotopic labeling of heterologous proteins in the yeast Pichia pastoris and Kluyveromyces lactis. Methods Mol Biol 2012 0.79
56 Affinity transfer to a human protein by CDR3 grafting of camelid VHH. Protein Sci 2011 0.79
57 Direct determination of the insulin-insulin receptor interface using transferred cross-saturation experiments. J Med Chem 2010 0.79
58 Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten. J Mol Biol 2005 0.79
59 Direct determination of a membrane-peptide interface using the nuclear magnetic resonance cross-saturation method. Biophys J 2005 0.79
60 Structure of the mouse sex peptide pheromone ESP1 reveals a molecular basis for specific binding to the class C G-protein-coupled vomeronasal receptor. J Biol Chem 2013 0.79
61 High-throughput screening of optimal solution conditions for structural biological studies by fluorescence correlation spectroscopy. Protein Sci 2009 0.79
62 HNCA-TOCSY-CANH experiments with alternate (13)C- (12)C labeling: a set of 3D experiment with unique supra-sequential information for mainchain resonance assignment. J Biomol NMR 2010 0.79
63 Backbone resonance assignment for the outer membrane lipoprotein receptor LolB from Escherichia coli. Biomol NMR Assign 2007 0.78
64 Structural investigation of the interaction between LolA and LolB using NMR. J Biol Chem 2009 0.78
65 A gel-encapsulated bioreactor system for NMR studies of protein-protein interactions in living mammalian cells. Angew Chem Int Ed Engl 2012 0.78
66 Oligomers of glycamino acid. Bioorg Med Chem 2002 0.78
67 Backbone resonance assignments for the Fv fragment of catalytic antibody 6D9 complexed with a transition state analogue. J Biomol NMR 2005 0.78
68 Spatial distribution of cytoplasmic domains of the Mg(2+)-transporter MgtE, in a solution lacking Mg(2+), revealed by paramagnetic relaxation enhancement. Biochim Biophys Acta 2012 0.78
69 Structural basis of efficient electron transport between photosynthetic membrane proteins and plastocyanin in spinach revealed using nuclear magnetic resonance. Plant Cell 2012 0.78
70 Segmental isotopic labeling of a 140 kDa dimeric multi-domain protein CheA from Escherichia coli by expressed protein ligation and protein trans-splicing. J Biomol NMR 2012 0.77
71 Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. FEBS J 2014 0.77
72 An NMR method for the determination of protein binding interfaces using TEMPOL-induced chemical shift perturbations. Biochim Biophys Acta 2009 0.77
73 Backbone resonance assignments for the periplasmic chaperone LolA from Escherichia coli. Biomol NMR Assign 2007 0.77
74 Structure-based approach to improve a small-molecule inhibitor by the use of a competitive peptide ligand. Angew Chem Int Ed Engl 2014 0.77
75 Backbone resonance assignments for G protein α(i3) subunit in the GTP-bound state. Biomol NMR Assign 2012 0.76
76 Backbone resonance assignments for G protein α(i3) subunit in the GDP-bound state. Biomol NMR Assign 2013 0.76
77 Backbone resonance assignments for the ligand binding subunit of the histidine permease complex (HisJ) from Escherichia coli, under histidine-bound and unbound states. Biomol NMR Assign 2009 0.76
78 Structure determination of a protein assembly by amino acid selective cross-saturation. Proteins 2010 0.76
79 Structural and interaction analysis of glycoprotein VI-binding peptide selected from a phage display library. J Biol Chem 2009 0.76
80 Backbone 1H, 13C, and 15N resonance assignments of the von Willebrand factor A3 domain. J Biomol NMR 2002 0.76
81 Rapid identification of protein-protein interfaces for the construction of a complex model based on multiple unassigned signals by using time-sharing NMR measurements. J Struct Biol 2011 0.75
82 Suppression of problematic compound oligomerization by cosolubilization of nondetergent sulfobetaines. ChemMedChem 2015 0.75
83 Stable isotope labeling of protein by Kluyveromyces lactis for NMR study. J Biomol NMR 2008 0.75
84 [Structural basis for biological processes activated by collagen-binding proteins]. Seikagaku 2008 0.75
85 An accurate pharmacophore mapping method by NMR spectroscopy. Angew Chem Int Ed Engl 2011 0.75
86 [Two-state equilibrium of hyaluronan-binding domain is crucial for CD44-mediated cell rolling]. Seikagaku 2011 0.75
87 Backbone and side-chain ¹H, ¹⁵N, and ¹³C resonance assignments of the microtubule-binding domain of yeast cytoplasmic dynein in the high and low-affinity states. Biomol NMR Assign 2013 0.75
88 Protein-ligand docking guided by ligand pharmacophore-mapping experiment by NMR. J Mol Graph Model 2011 0.75
89 Rapid identification of ligand-binding sites by using an assignment-free NMR approach. J Med Chem 2013 0.75
90 [NMR analysis of ligand molecules that weakly bind to target molecules]. Tanpakushitsu Kakusan Koso 2007 0.75
91 Structural basis of the transition-state stabilization in antibody-catalyzed hydrolysis. J Mol Biol 2006 0.75
92 Precise structural determination of weakly binding peptides by utilizing dihedral angle constraints. J Biomol NMR 2010 0.75
93 DNA-binding properties of the antibody specific for the Dewar photoproduct of thymidylyl-(3-5')-thymidine. Nucleosides Nucleotides Nucleic Acids 2006 0.75
94 [Biological supramolecular systems organizing living activity]. Tanpakushitsu Kakusan Koso 2005 0.75
95 Backbone resonance assignments for the cytoplasmic region of the Mg(2+) transporter MgtE in the Mg (2+)-unbound state. Biomol NMR Assign 2012 0.75
96 [Development of NMR methods for soft protein-protein interactions and their application to photosynthetic electron transfer protein interactions]. Seikagaku 2008 0.75
97 [Structural basis of the K+ channel inhibition by pore-blocking toxins, revealed by NMR]. Tanpakushitsu Kakusan Koso 2005 0.75