Published in J Biol Chem on May 28, 2004
Molecular mechanisms of ultraviolet radiation-induced DNA damage and repair. J Nucleic Acids (2010) 1.91
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Photoselected electron transfer pathways in DNA photolyase. Proc Natl Acad Sci U S A (2007) 1.28
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J Nucleic Acids (2010) 0.96
Surviving the sun: repair and bypass of DNA UV lesions. Protein Sci (2011) 0.96
Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue. Biophys J (2007) 0.80
A Novel Approach to Simulate a Charge Transfer in DNA Repair by an Anacystis nidulans Photolyase. Open Biochem J (2014) 0.75
Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science (2009) 4.41
UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex. Cell (2005) 3.85
Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges. Science (2012) 2.80
Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+. Proc Natl Acad Sci U S A (2002) 2.75
Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. J Biol Chem (2003) 2.66
Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions. Genes Dev (2010) 2.60
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell (2008) 2.47
Preferential cis-syn thymine dimer bypass by DNA polymerase eta occurs with biased fidelity. Nature (2004) 2.40
Salt-sensitive hypertension in circadian clock-deficient Cry-null mice involves dysregulated adrenal Hsd3b6. Nat Med (2009) 2.30
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci (2006) 2.29
The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair. DNA Repair (Amst) (2007) 2.26
Structures of the extracellular regions of the group II/III metabotropic glutamate receptors. Proc Natl Acad Sci U S A (2007) 2.22
The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation. Cell (2011) 2.16
Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Mol Cell (2006) 2.13
Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell (2003) 2.11
High-efficiency bypass of DNA damage by human DNA polymerase Q. EMBO J (2004) 2.07
X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes. Structure (2003) 2.03
The cryptochromes. Genome Biol (2005) 2.02
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics (2004) 1.96
Spindle microtubules generate tension-dependent changes in the distribution of inner kinetochore proteins. J Cell Biol (2011) 1.94
Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer. J Biol Chem (2004) 1.89
Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity. Mol Cell Biol (2004) 1.85
CENP-T-W-S-X forms a unique centromeric chromatin structure with a histone-like fold. Cell (2012) 1.85
Infrared laser-mediated gene induction in targeted single cells in vivo. Nat Methods (2008) 1.78
The clamp-loading complex for processive DNA replication. Nat Struct Mol Biol (2004) 1.75
Involvement of urinary bladder Connexin43 and the circadian clock in coordination of diurnal micturition rhythm. Nat Commun (2012) 1.74
Structural and functional analyses of an archaeal XPF/Rad1/Mus81 nuclease: asymmetric DNA binding and cleavage mechanisms. Structure (2005) 1.73
An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr D Biol Crystallogr (2002) 1.72
Translesion synthesis by human DNA polymerase eta across thymine glycol lesions. Biochemistry (2002) 1.71
Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases. Genes Dev (2007) 1.68
Cryptochrome is present in the compound eyes and a subset of Drosophila's clock neurons. J Comp Neurol (2008) 1.67
Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis. Proc Natl Acad Sci U S A (2005) 1.66
Crystal structure of elongation factor P from Thermus thermophilus HB8. Proc Natl Acad Sci U S A (2004) 1.65
A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes. Mech Dev (2004) 1.65
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography. Structure (2009) 1.64
Structural basis of the interaction between chemokine stromal cell-derived factor-1/CXCL12 and its G-protein-coupled receptor CXCR4. J Biol Chem (2009) 1.60
Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle. Nucleic Acids Res (2005) 1.60
Crystal structure and functional implications of Pyrococcus furiosus hef helicase domain involved in branched DNA processing. Structure (2005) 1.59
Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease. Structure (2007) 1.59
Centrin 2 stimulates nucleotide excision repair by interacting with xeroderma pigmentosum group C protein. Mol Cell Biol (2005) 1.58
Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions. J Biol Chem (2004) 1.53
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair (Amst) (2002) 1.53
Role of Gln1029 in the photoactivation processes of the LOV2 domain in adiantum phytochrome3. Biochemistry (2004) 1.53
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc Natl Acad Sci U S A (2007) 1.52
Identification and characterization of the slowly exchanging pH-dependent conformational rearrangement in KcsA. J Biol Chem (2007) 1.50
Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol (2009) 1.50
Human DNA polymerase N (POLN) is a low fidelity enzyme capable of error-free bypass of 5S-thymine glycol. J Biol Chem (2006) 1.49
Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro. Genes Cells (2003) 1.48
Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology. Nat Methods (2007) 1.48
Structure of the whole cytosolic region of ATP-dependent protease FtsH. Mol Cell (2006) 1.46
Efficacy of the β₂-adrenergic receptor is determined by conformational equilibrium in the transmembrane region. Nat Commun (2012) 1.40
DDB1-DDB2 (xeroderma pigmentosum group E) protein complex recognizes a cyclobutane pyrimidine dimer, mismatches, apurinic/apyrimidinic sites, and compound lesions in DNA. J Biol Chem (2005) 1.38
Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning. Mol Cell (2009) 1.37
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Identification of cryptochrome DASH from vertebrates. Genes Cells (2004) 1.36
Crystal structure of the RuvA-RuvB complex: a structural basis for the Holliday junction migrating motor machinery. Mol Cell (2002) 1.35
Serine phosphorylation of mCRY1 and mCRY2 by mitogen-activated protein kinase. Genes Cells (2004) 1.34
Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution. Nat Biotechnol (2004) 1.34
Structural basis underlying the dual gate properties of KcsA. Proc Natl Acad Sci U S A (2010) 1.33
Generation of medaka gene knockout models by target-selected mutagenesis. Genome Biol (2006) 1.30
An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress. J Biol Chem (2003) 1.30
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis. Acta Crystallogr D Biol Crystallogr (2007) 1.29
Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes. J Biol Chem (2003) 1.28
Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP. J Biochem (2004) 1.27
The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay. Biochemistry (2002) 1.26
Structural basis of the collagen-binding mode of discoidin domain receptor 2. EMBO J (2007) 1.26
Domain architectures and characterization of an RNA-binding protein, TLS. J Biol Chem (2004) 1.26
Direct observation of a photoinduced radical pair in a cryptochrome blue-light photoreceptor. Angew Chem Int Ed Engl (2009) 1.24
Reduced alpha-adrenoceptor responsiveness and enhanced baroreflex sensitivity in Cry-deficient mice lacking a biological clock. J Physiol (2005) 1.22
Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids. J Mol Biol (2008) 1.21
Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8. Structure (2002) 1.20
Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus. Genes Cells (2002) 1.20
Determination of the interface of a large protein complex by transferred cross-saturation measurements. J Mol Biol (2002) 1.20
Structural tuning of the fluorescent protein iLOV for improved photostability. J Biol Chem (2012) 1.19
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. J Mol Biol (2003) 1.18
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol (2007) 1.17
Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8. Microbiology (2010) 1.17
Mechanism of replication machinery assembly as revealed by the DNA ligase-PCNA-DNA complex architecture. Proc Natl Acad Sci U S A (2009) 1.16
REV1 restrains DNA polymerase zeta to ensure frame fidelity during translesion synthesis of UV photoproducts in vivo. Nucleic Acids Res (2008) 1.15
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep (2009) 1.15
Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair. Nucleic Acids Res (2003) 1.14
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus. FEBS Lett (2003) 1.14
Zebrafish CRY represses transcription mediated by CLOCK-BMAL heterodimer without inhibiting its binding to DNA. Genes Cells (2002) 1.14
Comparison of MukB homodimer versus MukBEF complex molecular architectures by electron microscopy reveals a higher-order multimerization. Biochem Biophys Res Commun (2005) 1.14
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2002) 1.13
Visualization of intrinsically disordered regions of proteins by high-speed atomic force microscopy. Chemphyschem (2008) 1.13
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2003) 1.12
Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome. J Mol Biol (2011) 1.11
Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA. Protein Sci (2003) 1.11
Structure of RecJ exonuclease defines its specificity for single-stranded DNA. J Biol Chem (2010) 1.11
Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8. J Struct Funct Genomics (2005) 1.11
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins (2008) 1.10
Collagen-binding mode of vWF-A3 domain determined by a transferred cross-saturation experiment. Nat Struct Biol (2003) 1.10
Identification and characterization of tRNA (Gm18) methyltransferase from Thermus thermophilus HB8: domain structure and conserved amino acid sequence motifs. Genes Cells (2002) 1.10
A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI. J Mol Biol (2005) 1.10