Published in J Bioinform Comput Biol on December 01, 2006
Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat Genet (2010) 10.97
Macrophages regulate the angiogenic switch in a mouse model of breast cancer. Cancer Res (2006) 6.52
Energy balance for analysis of complex metabolic networks. Biophys J (2002) 3.46
DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1. Proc Natl Acad Sci U S A (2007) 3.32
Molecular evidence for hierarchical transcriptional lineage priming in fetal and adult stem cells and multipotent progenitors. Immunity (2007) 3.26
A global evaluation of metabolic theory as an explanation for terrestrial species richness gradients. Ecology (2007) 2.29
Thermodynamic constraints for biochemical networks. J Theor Biol (2004) 2.19
Acquired TNFRSF14 mutations in follicular lymphoma are associated with worse prognosis. Cancer Res (2010) 1.79
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data. BMC Bioinformatics (2007) 1.75
Kit regulates maintenance of quiescent hematopoietic stem cells. J Immunol (2008) 1.60
Relationship between thermodynamic driving force and one-way fluxes in reversible processes. PLoS One (2007) 1.58
Chromatin looping and the probability of transcription. Trends Genet (2006) 1.53
Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolism. Am J Physiol Endocrinol Metab (2004) 1.46
Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry. Metab Eng (2005) 1.41
Cytokines regulate postnatal hematopoietic stem cell expansion: opposing roles of thrombopoietin and LNK. Genes Dev (2006) 1.40
Prognostic impact of inappropriate defibrillator shocks in a population cohort. Heart (2013) 1.38
Oxygen-sensitive {delta}-opioid receptor-regulated survival and death signals: novel insights into neuronal preconditioning and protection. J Biol Chem (2005) 1.26
Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited. J R Soc Interface (2008) 1.24
ARC (apoptosis repressor with caspase recruitment domain) is a novel marker of human colon cancer. Cell Cycle (2008) 1.21
Physical origins of entropy production, free energy dissipation, and their mathematical representations. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.19
Readmission rates of patients discharged against medical advice: a matched cohort study. PLoS One (2011) 1.19
The role of exotic species in homogenizing the North American flora. Ecol Lett (2006) 1.18
ErbB3-dependent motility and intravasation in breast cancer metastasis. Cancer Res (2006) 1.15
Phenotype reversion in fetal human liver epithelial cells identifies the role of an intermediate meso-endodermal stage before hepatic maturation. J Cell Sci (2008) 1.12
IL-7 mediates Ebf-1-dependent lineage restriction in early lymphoid progenitors. Blood (2011) 1.10
Regional differences in rates of plant speciation and molecular evolution: a comparison between eastern Asia and eastern North America. Evolution (2004) 1.09
A comparison of MS/MS-based, stable-isotope-labeled, quantitation performance on ESI-quadrupole TOF and MALDI-TOF/TOF mass spectrometers. Proteomics (2009) 1.07
Health disparities between island and mainland Puerto Ricans. Rev Panam Salud Publica (2006) 1.07
Differential tissue and subcellular expressionof ERM proteins in normal and malignant tissues: cytoplasmic ezrin expression has prognostic signficance for head and neck squamous cell carcinoma. Head Neck (2006) 1.05
Identification of tyrosine kinase, HCK, and tumor suppressor, BIN1, as potential mediators of AHI-1 oncogene in primary and transformed CTCL cells. Blood (2009) 1.04
Rapid hypoxia preconditioning protects cortical neurons from glutamate toxicity through delta-opioid receptor. Stroke (2006) 1.04
Use of Affymetrix mapping arrays in the diagnosis of gene copy number variation. Curr Protoc Hum Genet (2008) 1.03
In vitro and in vivo activity of R547: a potent and selective cyclin-dependent kinase inhibitor currently in phase I clinical trials. Mol Cancer Ther (2006) 1.02
A selective phosphatase of regenerating liver phosphatase inhibitor suppresses tumor cell anchorage-independent growth by a novel mechanism involving p130Cas cleavage. Cancer Res (2008) 1.01
Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase. Biophys J (2010) 1.00
A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox. Bull Math Biol (2007) 0.99
Grand canonical Markov model: a stochastic theory for open nonequilibrium biochemical networks. J Chem Phys (2006) 0.98
Thermodynamic limit of a nonequilibrium steady state: Maxwell-type construction for a bistable biochemical system. Phys Rev Lett (2009) 0.96
Powering a burnt bridges Brownian ratchet: a model for an extracellular motor driven by proteolysis of collagen. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.96
The risks of post-operative complications following pre-operative infliximab therapy for Crohn's disease in patients undergoing abdominal surgery: a systematic review and meta-analysis. J Crohns Colitis (2013) 0.95
Kinetic timing: a novel mechanism that improves the accuracy of GTPase timers in endosome fusion and other biological processes. Traffic (2002) 0.95
Detection of pathogenic copy number variants in children with idiopathic intellectual disability using 500 K SNP array genomic hybridization. BMC Genomics (2009) 0.94
Differentiation of dermal multipotent cells into odontogenic lineage induced by embryonic and neonatal tooth germ cell-conditioned medium. Stem Cells Dev (2010) 0.93
Sensitivity and specificity amplification in signal transduction. Cell Biochem Biophys (2003) 0.92
Synchronized dynamics and non-equilibrium steady states in a stochastic yeast cell-cycle network. Math Biosci (2007) 0.91
Assessment of the proliferative status of epithelial cell types in the endometrium of young and menopausal transition women. Hum Reprod (2007) 0.90
NASA-approved rotary bioreactor enhances proliferation and osteogenesis of human periodontal ligament stem cells. Stem Cells Dev (2009) 0.89
Nonequilibrium steady state of a nanometric biochemical system: determining the thermodynamic driving force from single enzyme turnover time traces. Nano Lett (2005) 0.89
Comparison of genome-wide array genomic hybridization platforms for the detection of copy number variants in idiopathic mental retardation. BMC Med Genomics (2011) 0.88
Single-cell analysis of early B-lymphocyte development suggests independent regulation of lineage specification and commitment in vivo. Proc Natl Acad Sci U S A (2012) 0.88
Expression of integrin α2 receptor in human cord blood CD34+CD38-CD90+ stem cells engrafting long-term in NOD/SCID-IL2Rγ(c) null mice. Stem Cells (2013) 0.87
Delayed onset of positive feedback activation of Rab5 by Rabex-5 and Rabaptin-5 in endocytosis. PLoS One (2010) 0.87
GABA and glycine are protective to mature but toxic to immature rat cortical neurons under hypoxia. Eur J Neurosci (2005) 0.87
Down-regulation of delta-opioid receptors in Na+/H+ exchanger 1 null mutant mouse brain with epilepsy. Neurosci Res (2005) 0.86
Early B-cell factor 1 regulates the expansion of B-cell progenitors in a dose-dependent manner. J Biol Chem (2013) 0.85
Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences. Proc Natl Acad Sci U S A (2006) 0.85
Lipopolysaccharide-induced fever depends on prostaglandin E2 production specifically in brain endothelial cells. Endocrinology (2012) 0.83
Open-system thermodynamic analysis of DNA polymerase fidelity. Phys Biol (2009) 0.83
Interleukin-7-induced Stat-5 acts in synergy with Flt-3 signaling to stimulate expansion of hematopoietic progenitor cells. J Biol Chem (2010) 0.83
A stochastic model of DNA fragments rejoining. PLoS One (2012) 0.83
Fluctuation theorems for a molecular refrigerator. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.82
A perturbation analysis of rate theory of self-regulating genes and signaling networks. J Chem Phys (2011) 0.82
Anisomycin protects cortical neurons from prolonged hypoxia with differential regulation of p38 and ERK. Brain Res (2007) 0.82
Performance of interferon-gamma release assays in patients with inflammatory bowel disease: a systematic review and meta-analysis. Inflamm Bowel Dis (2012) 0.82
Large-conductance Ca2+-activated K+ currents blocked and impaired by homocysteine in human and rat mesenteric artery smooth muscle cells. Life Sci (2007) 0.81
Stochastic ensembles, conformationally adaptive teamwork, and enzymatic detoxification. Biochemistry (2011) 0.81
Distributions of exotic plants in eastern Asia and North America. Ecol Lett (2006) 0.81
Outcomes following percutaneous coronary intervention and coronary artery bypass grafting surgery in Chinese, South Asian and White patients with acute myocardial infarction: administrative data analysis. BMC Cardiovasc Disord (2013) 0.81
Amplification and detection of single-molecule conformational fluctuation through a protein interaction network with bimodal distributions. J Phys Chem B (2009) 0.81
Periapical follicle stem cell: a promising candidate for cementum/periodontal ligament regeneration and bio-root engineering. Stem Cells Dev (2010) 0.81
Multiscale modeling of cardiac cellular energetics. Ann N Y Acad Sci (2005) 0.80
Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication. BMC Genomics (2010) 0.80
[Protective effect of total flavonoids of epimedium on the kidney in experimental diabetic rats]. Zhongguo Ying Yong Sheng Li Xue Za Zhi (2014) 0.80
Nonlinear biochemical signal processing via noise propagation. J Chem Phys (2013) 0.80
Fixation, transient landscape, and diffusion dilemma in stochastic evolutionary game dynamics. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.80
Amplifying signal transduction specificity without multiple phosphorylation. Biophys J (2003) 0.80
Non-equilibrium phase transition in mesoscopic biochemical systems: from stochastic to nonlinear dynamics and beyond. J R Soc Interface (2010) 0.79
Expression of vascular endothelial growth factor in cultured human dental follicle cells and its biological roles. Acta Pharmacol Sin (2007) 0.79
Landscapes of non-gradient dynamics without detailed balance: stable limit cycles and multiple attractors. Chaos (2012) 0.79
Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory. BMC Syst Biol (2008) 0.78
Circular stochastic fluctuations in SIS epidemics with heterogeneous contacts among sub-populations. Theor Popul Biol (2012) 0.78
Does the sedation regimen affect adverse events during procedural sedation and analgesia in injection drug users? CJEM (2013) 0.78
Potential Mechanism of Post-Acute Aortic Dissection Inflammatory Responses: The Role of mtDNA from Activated Platelets. Cardiology (2016) 0.78
Oscillations and multiscale dynamics in a closed chemical reaction system: second law of thermodynamics and temporal complexity. J Chem Phys (2008) 0.77
Ultrasensitive dual phosphorylation dephosphorylation cycle kinetics exhibits canonical competition behavior. Chaos (2009) 0.77
Clustering coefficients of protein-protein interaction networks. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.77
Entropy production of Brownian macromolecules with inertia. Phys Rev Lett (2004) 0.77
Chronic alcoholism-mediated impairment in the medulla oblongata: a mechanism of alcohol-related mortality in traumatic brain injury? Cell Biochem Biophys (2013) 0.76
Do injection drug users have more adverse events during procedural sedation and analgesia for incision and drainage of cutaneous abscesses? CJEM (2013) 0.76
[Mid-long-term clinical results and hemodynamic evaluation of aortic valve replacement with 17 mm St. Jude medical regent valve]. Sichuan Da Xue Xue Bao Yi Xue Ban (2013) 0.76
[Clinical efficacy and safety of sublingual immunotherapy using standardized Dermatophagoides farinae extract for children with combined allergic rhinitis and asthma syndrome]. Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi (2011) 0.76
A stochastic model of oscillatory blood testosterone levels. Bull Math Biol (2006) 0.76
Severe diffuse axon injury in chronic alcoholic rat medulla oblongata following a concussion blow. Alcohol Alcohol (2014) 0.76
Efficient intratracheal delivery of airway epithelial cells in mice and pigs. Am J Physiol Lung Cell Mol Physiol (2015) 0.76
Introducing Bayesian thinking to high-throughput screening for false-negative rate estimation. J Biomol Screen (2013) 0.76
Promoting evidence-based practice through a research training program for point-of-care clinicians. J Nurs Adm (2015) 0.75
Dissipation, generalized free energy, and a self-consistent nonequilibrium thermodynamics of chemically driven open subsystems. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.75
Seventeen-millimeter St. Jude Medical Regent valve in patients with small aortic annulus: dose moderate prosthesis-patient mismatch matter? J Cardiothorac Surg (2014) 0.75
Plant species invasions along the latitudinal gradient in the United States: comment. Ecology (2006) 0.75
Irreversible thermodynamics in multiscale stochastic dynamical systems. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.75