Published in Mycologia on May 09, 2007
The evolution of combinatorial gene regulation in fungi. PLoS Biol (2008) 3.53
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet (2008) 3.23
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog (2012) 2.66
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature (2010) 2.61
Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PLoS Genet (2011) 2.35
Yeast evolutionary genomics. Nat Rev Genet (2010) 2.27
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res (2009) 2.10
The Colletotrichum gloeosporioides species complex. Stud Mycol (2012) 2.02
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda) (2011) 1.86
Evolution of increased complexity in a molecular machine. Nature (2012) 1.58
How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes. Genes Dev (2014) 1.56
A mechanism for the evolution of phosphorylation sites. Cell (2011) 1.47
Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine. Genome Biol (2011) 1.42
On the Evolutionary History of Uleiella chilensis, a Smut Fungus Parasite of Araucaria araucana in South America: Uleiellales ord. nov. in Ustilaginomycetes. PLoS One (2016) 1.38
The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses. BMC Biol (2009) 1.36
Inferring phylogenies from RAD sequence data. PLoS One (2012) 1.34
Candida albicans scavenges host zinc via Pra1 during endothelial invasion. PLoS Pathog (2012) 1.34
A glimpse into the basis of vision in the kingdom Mycota. Fungal Genet Biol (2010) 1.32
The fungi. Curr Biol (2009) 1.28
Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis. Proc Natl Acad Sci U S A (2008) 1.25
Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A (2011) 1.24
Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Proc Natl Acad Sci U S A (2010) 1.23
Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification. Cell (2012) 1.21
Fungal diversity in deep-sea hydrothermal ecosystems. Appl Environ Microbiol (2009) 1.19
Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates. Microb Cell Fact (2012) 1.14
Hyphal chain formation in Candida albicans: Cdc28-Hgc1 phosphorylation of Efg1 represses cell separation genes. Mol Cell Biol (2009) 1.13
Jumbled genomes: missing Apicomplexan synteny. Mol Biol Evol (2011) 1.11
Dating the diversification of the major lineages of Ascomycota (Fungi). PLoS One (2013) 1.11
A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics (2011) 1.07
Coevolution of morphology and virulence in Candida species. Eukaryot Cell (2011) 1.07
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. BMC Genomics (2014) 1.07
Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Stud Mycol (2013) 1.06
Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes. Genetics (2008) 1.05
Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proc Natl Acad Sci U S A (2013) 1.03
Evolution and diversity of a fungal self/nonself recognition locus. PLoS One (2010) 1.03
The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte. Sci Rep (2014) 1.00
Comparative evolutionary histories of the fungal chitinase gene family reveal non-random size expansions and contractions due to adaptive natural selection. Evol Bioinform Online (2008) 1.00
DNA sequence analyses reveal abundant diversity, endemism and evidence for Asian origin of the porcini mushrooms. PLoS One (2012) 0.99
Origin and diversification of major clades in parmelioid lichens (Parmeliaceae, Ascomycota) during the Paleogene inferred by Bayesian analysis. PLoS One (2011) 0.97
Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. BMC Genomics (2008) 0.97
Systematic functional profiling of transcription factor networks in Cryptococcus neoformans. Nat Commun (2015) 0.96
Identification and evolution of fungal mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity. Proc Natl Acad Sci U S A (2008) 0.96
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent. BMC Genomics (2013) 0.95
Structural, functional, and bioinformatic studies demonstrate the crucial role of an extended peptide binding site for the SH3 domain of yeast Abp1p. J Biol Chem (2009) 0.94
Horizontal gene transfer in osmotrophs: playing with public goods. Nat Rev Microbiol (2013) 0.94
Ferrochelatase is a conserved downstream target of the blue light-sensing White collar complex in fungi. Microbiology (2010) 0.93
Fungal cytochrome p450 monooxygenases: their distribution, structure, functions, family expansion, and evolutionary origin. Genome Biol Evol (2014) 0.93
N-acetylglucosamine (GlcNAc) triggers a rapid, temperature-responsive morphogenetic program in thermally dimorphic fungi. PLoS Genet (2013) 0.92
The bZIP transcription factor Rca1p is a central regulator of a novel CO₂ sensing pathway in yeast. PLoS Pathog (2012) 0.92
Multi-locus phylogeny of lethal amanitas: implications for species diversity and historical biogeography. BMC Evol Biol (2014) 0.91
Deep conservation of human protein tandem repeats within the eukaryotes. Mol Biol Evol (2014) 0.91
A widespread class of reverse transcriptase-related cellular genes. Proc Natl Acad Sci U S A (2011) 0.91
Evolutionary conserved function of barley and Arabidopsis 3-KETOACYL-CoA SYNTHASES in providing wax signals for germination of powdery mildew fungi. Plant Physiol (2014) 0.91
Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis. Genome Biol Evol (2014) 0.91
The complex evolutionary dynamics of Hsp70s: a genomic and functional perspective. Genome Biol Evol (2013) 0.90
Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa. Eukaryot Cell (2013) 0.89
Exploitation of latent allostery enables the evolution of new modes of MAP kinase regulation. Cell (2013) 0.89
Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution. PLoS Genet (2010) 0.89
High variability of mitochondrial gene order among fungi. Genome Biol Evol (2014) 0.88
Applying genetics and molecular biology to the study of the human pathogen Cryptococcus neoformans. Methods Enzymol (2010) 0.87
Essential gene discovery in the basidiomycete Cryptococcus neoformans for antifungal drug target prioritization. MBio (2015) 0.87
Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics. Front Plant Sci (2013) 0.86
Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature. PLoS One (2014) 0.86
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. Genome Biol Evol (2015) 0.86
Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus. BMC Genomics (2014) 0.85
Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin. BMC Genomics (2016) 0.84
Co-evolution-driven switch of J-protein specificity towards an Hsp70 partner. EMBO Rep (2010) 0.84
Evidence for a common toolbox based on necrotrophy in a fungal lineage spanning necrotrophs, biotrophs, endophytes, host generalists and specialists. PLoS One (2012) 0.84
A model system for mitochondrial biogenesis reveals evolutionary rewiring of protein import and membrane assembly pathways. Proc Natl Acad Sci U S A (2012) 0.83
Importance of MAP kinases during protoperithecial morphogenesis in Neurospora crassa. PLoS One (2012) 0.83
Dimensions of biodiversity in the Earth mycobiome. Nat Rev Microbiol (2016) 0.83
Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions. BMC Evol Biol (2012) 0.82
Did terrestrial diversification of amoebas (amoebozoa) occur in synchrony with land plants? PLoS One (2013) 0.82
The transcription factors Tec1 and Ste12 interact with coregulators Msa1 and Msa2 to activate adhesion and multicellular development. Mol Cell Biol (2014) 0.81
Phylogenetic and preliminary phenotypic analysis of yeast PAQR receptors: potential antifungal targets. J Mol Evol (2011) 0.81
Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression. Elife (2016) 0.80
Mycophagous rove beetles highlight diverse mushrooms in the Cretaceous. Nat Commun (2017) 0.80
The importance of conserved features of yeast actin-binding protein 1 (Abp1p): the conditional nature of essentiality. Genetics (2012) 0.80
Yeast adaptor protein, Nbp2p, is conserved regulator of fungal Ptc1p phosphatases and is involved in multiple signaling pathways. J Biol Chem (2012) 0.79
Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets. Biomed Res Int (2013) 0.79
Pleistocene speciation in North American lichenized fungi and the impact of alternative species circumscriptions and rates of molecular evolution on divergence estimates. PLoS One (2013) 0.79
Continental Drift and Speciation of the Cryptococcus neoformans and Cryptococcus gattii Species Complexes. mSphere (2017) 0.79
Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei. BMC Genomics (2014) 0.79
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. Nat Commun (2016) 0.79
Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda) (2016) 0.78
Paleogene radiation of a plant pathogenic mushroom. PLoS One (2011) 0.78
Molecular and functional evolution of the fungal diterpene synthase genes. BMC Microbiol (2015) 0.78
Widespread adenine N6-methylation of active genes in fungi. Nat Genet (2017) 0.77
Target selection by natural and redesigned PUF proteins. Proc Natl Acad Sci U S A (2015) 0.77
Selection for reduced translation costs at the intronic 5' end in fungi. DNA Res (2016) 0.77
Discovery of a novel small secreted protein family with conserved N-terminal IGY motif in Dikarya fungi. BMC Genomics (2014) 0.77
Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus. Nucleic Acids Res (2012) 0.76
The roles of zinc and copper sensing in fungal pathogenesis. Curr Opin Microbiol (2016) 0.76
Isolation of conditional mutations in genes essential for viability of Cryptococcus neoformans. Curr Genet (2016) 0.76
Rab-GDI complex dissociation factor expressed through translational frameshifting in filamentous ascomycetes. PLoS One (2013) 0.75
Basidioascus undulatus: genome, origins, and sexuality. IMA Fungus (2015) 0.75
Hidden Genetic Diversity in an Asexually Reproducing Lichen Forming Fungal Group. PLoS One (2016) 0.75
Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria succini Mägdefrau. PLoS One (2015) 0.75
Reshuffling transcriptional circuits: how microorganisms adapt to colonize the human body. Transcription (2014) 0.75
The fungi. Curr Biol (2009) 1.28
Lateral transfer of mating system in Stemphylium. Proc Natl Acad Sci U S A (2005) 1.24
Pleospora species with Stemphylium anamorphs: a four locus phylogeny resolves new lineages yet does not distinguish among species in the Pleospora herbarum clade. Mycologia (2009) 1.10
No jacket required--new fungal lineage defies dress code: recently described zoosporic fungi lack a cell wall during trophic phase. Bioessays (2011) 1.05
Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding. Mol Phylogenet Evol (2008) 0.95
A multigene phylogeny of Olpidium and its implications for early fungal evolution. BMC Evol Biol (2011) 0.87
Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia (2006) 0.86
Multiple isolations of a culturable, motile Ichthyosporean (Mesomycetozoa, Opisthokonta), Creolimax fragrantissima n. gen., n. sp., from marine invertebrate digestive tracts. Protist (2008) 0.84
Decorospora, a new genus for the marine ascomycete Pleospora gaudefroyi. Mycologia (2010) 0.84
The phylogenetic position of Spathulospora based on DNA sequences from dried herbarium material. Mycol Res (2004) 0.84
Population-level analyses indirectly reveal cryptic sex and life history traits of Pseudoperkinsus tapetis (Ichthyosporea, Opisthokonta): a unicellular relative of the animals. Mol Biol Evol (2010) 0.83
Tubeufia asiana, the teleomorph of Aquaphila albicans in the tubeufiaceae, pleosporales, based on cultural and molecular data. Mycologia (2008) 0.82
The effect of fertilization on the below-ground diversity and community composition of ectomycorrhizal fungi associated with western hemlock (Tsuga heterophylla). Mycorrhiza (2009) 0.81
Phylogenetic structure of ectomycorrhizal fungal communities of western hemlock changes with forest age and stand type. Mycorrhiza (2013) 0.78
Comparative morphology and genealogical delimitation of cryptic species of sympatric isolates of Sphaeroforma (Ichthyosporea, Opisthokonta). Protist (2013) 0.77