Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.

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Published in PLoS Pathog on December 06, 2012

Authors

Robin A Ohm1, Nicolas Feau, Bernard Henrissat, Conrad L Schoch, Benjamin A Horwitz, Kerrie W Barry, Bradford J Condon, Alex C Copeland, Braham Dhillon, Fabian Glaser, Cedar N Hesse, Idit Kosti, Kurt LaButti, Erika A Lindquist, Susan Lucas, Asaf A Salamov, Rosie E Bradshaw, Lynda Ciuffetti, Richard C Hamelin, Gert H J Kema, Christopher Lawrence, James A Scott, Joseph W Spatafora, B Gillian Turgeon, Pierre J G M de Wit, Shaobin Zhong, Stephen B Goodwin, Igor V Grigoriev

Author Affiliations

1: United States Department of Energy DOE Joint Genome Institute JGI, Walnut Creek, California, United States of America. raohm@lbl.gov

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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19

Symbiosis insights through metagenomic analysis of a microbial consortium. Nature (2006) 5.04

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science (2012) 4.93

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol (2004) 4.85

The genome of the Western clawed frog Xenopus tropicalis. Science (2010) 4.70

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics (2002) 4.54

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (2007) 4.43

The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med (2011) 4.24

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet (2013) 4.20

Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins. Protein Eng Des Sel (2006) 4.13

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A (2009) 4.09

Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol (2013) 4.06

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci U S A (2009) 4.03

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Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol (2011) 3.97

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A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia (2007) 3.93

Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (2010) 3.70

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet (2011) 3.52

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The revised classification of eukaryotes. J Eukaryot Microbiol (2012) 3.48

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Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol (2007) 3.42

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnol Biofuels (2013) 3.30

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The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (2011) 3.10

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Azole resistance in Aspergillus fumigatus: a side-effect of environmental fungicide use? Lancet Infect Dis (2009) 3.03

Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr Opin Struct Biol (2005) 3.01

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biol (2009) 2.99

High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol (2008) 2.99

The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell (2010) 2.93

Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes. Proc Natl Acad Sci U S A (2003) 2.93