PubRank

Inna Dubchak

Author PubWeight™ 333.27‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Initial sequencing and comparative analysis of the mouse genome. Nature 2002 96.15
2 Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 2004 24.40
3 The Sorghum bicolor genome and the diversification of grasses. Nature 2009 14.62
4 The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res 2007 13.81
5 VISTA: computational tools for comparative genomics. Nucleic Acids Res 2004 13.52
6 The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 2007 11.15
7 In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006 10.60
8 AVID: A global alignment program. Genome Res 2003 10.06
9 Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res 2005 8.38
10 The amphioxus genome and the evolution of the chordate karyotype. Nature 2008 8.03
11 The integrated microbial genomes (IMG) system. Nucleic Acids Res 2006 7.34
12 rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res 2002 7.33
13 IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 2007 7.18
14 Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol 2004 7.17
15 VISTA Enhancer Browser--a database of tissue-specific human enhancers. Nucleic Acids Res 2006 7.04
16 Visualizing genomes: techniques and challenges. Nat Methods 2010 6.66
17 Glocal alignment: finding rearrangements during alignment. Bioinformatics 2003 4.88
18 Strategies and tools for whole-genome alignments. Genome Res 2003 4.86
19 The genome of the Western clawed frog Xenopus tropicalis. Science 2010 4.70
20 Characterization of evolutionary rates and constraints in three Mammalian genomes. Genome Res 2004 4.45
21 Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 2009 4.05
22 Cross-species sequence comparisons: a review of methods and available resources. Genome Res 2003 3.90
23 The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A 2007 3.58
24 The genome portal of the Department of Energy Joint Genome Institute. Nucleic Acids Res 2011 3.26
25 An experimental metagenome data management and analysis system. Bioinformatics 2006 2.71
26 Automated whole-genome multiple alignment of rat, mouse, and human. Genome Res 2004 2.64
27 MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res 2013 2.60
28 Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors. Cell 2008 2.60
29 RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res 2009 2.53
30 The DNA sequence and biology of human chromosome 19. Nature 2004 2.29
31 The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons. Nucleic Acids Res 2005 2.20
32 Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 2004 1.97
33 RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res 2006 1.95
34 A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing. Nucleic Acids Res 2007 1.94
35 A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr Biol 2010 1.93
36 RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res 2010 1.81
37 Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 2008 1.79
38 Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria. Genome Biol 2004 1.78
39 RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria. BMC Genomics 2013 1.61
40 Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A. Proc Natl Acad Sci U S A 2005 1.52
41 The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic Acids Res 2013 1.50
42 Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J Bacteriol 2008 1.45
43 ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res 2008 1.30
44 Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics 2011 1.26
45 RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 2013 1.13
46 RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. Nucleic Acids Res 2012 1.06
47 Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Res 2007 1.04
48 Extensive parallelism in protein evolution. Biol Direct 2007 1.00
49 TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. Bioinformatics 2007 0.98
50 Conservation patterns in different functional sequence categories of divergent Drosophila species. Genomics 2006 0.97
51 Differential domain evolution and complex RNA processing in a family of paralogous EPB41 (protein 4.1) genes facilitate expression of diverse tissue-specific isoforms. Genomics 2004 0.96
52 Variation in conserved non-coding sequences on chromosome 5q and susceptibility to asthma and atopy. Respir Res 2005 0.88
53 Comparative genomics of the dormancy regulons in mycobacteria. J Bacteriol 2011 0.88
54 Short sequence motifs, overrepresented in mammalian conserved non-coding sequences. BMC Genomics 2007 0.87
55 Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes. J Bacteriol 2012 0.86
56 VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies. Bioinformatics 2011 0.85
57 High-throughput translational medicine: challenges and solutions. Adv Exp Med Biol 2014 0.81
58 Comparative genomics approaches to study organism similarities and differences. J Biomed Inform 2002 0.80
59 SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data. Mamm Genome 2002 0.79
60 Obtaining comparative genomic data with the VISTA family of computational tools. Curr Protoc Bioinformatics 2009 0.78
61 New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria. J Bacteriol 2013 0.78
62 Tandem termination signal in plant mRNAs. Gene 2011 0.76