Published in J Mol Model on May 15, 2007
Determination of ligand pathways in globins: apolar tunnels versus polar gates. J Biol Chem (2012) 0.83
CO rebinding kinetics and molecular dynamics simulations highlight dynamic regulation of internal cavities in human cytoglobin. PLoS One (2013) 0.80
Molecular dynamics simulations of the photoactive protein nitrile hydratase. Biophys J (2008) 0.80
Molecular dynamics simulation of a carboxy murine neuroglobin mutated on the proximal side: heme displacement and concomitant rearrangement in loop regions. J Mol Model (2009) 0.77
Effects of mutations on the molecular dynamics of oxygen escape from the dimeric hemoglobin of Scapharca inaequivalvis. F1000Res (2015) 0.76
Effects of distal mutation on the dynamic properties of carboxycytoglobin: a molecular dynamics simulation study. J Biol Inorg Chem (2013) 0.75
Computational investigation of O2 diffusion through an intra-molecular tunnel in AlkB; influence of polarization on O2 transport. Chem Sci (2017) 0.75
Molecular dynamics study of hell's gate globin I (HGbI) from a methanotrophic extremophile: oxygen migration through a large cavity. J Mol Model (2013) 0.75
Dynamic features of carboxy cytoglobin distal mutants investigated by molecular dynamics simulations. J Biol Inorg Chem (2016) 0.75
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis (1997) 57.27
The Jalview Java alignment editor. Bioinformatics (2004) 21.74
A vertebrate globin expressed in the brain. Nature (2000) 5.34
Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin. Science (1987) 4.89
Watching a protein as it functions with 150-ps time-resolved x-ray crystallography. Science (2003) 4.12
Regulation of oxygen affinity of hemoglobin: influence of structure of the globin on the heme iron. Annu Rev Biochem (1979) 3.47
Myoglobin-facilitated oxygen diffusion: role of myoglobin in oxygen entry into muscle. Physiol Rev (1970) 3.13
Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A. Biochemistry (1984) 3.05
Myoglobin and the structure of proteins. Science (1963) 2.81
Biochemical characterization and ligand binding properties of neuroglobin, a novel member of the globin family. J Biol Chem (2001) 2.78
Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues. Mol Biol Evol (2002) 2.53
Neuroglobin and cytoglobin. Fresh blood for the vertebrate globin family. EMBO Rep (2002) 2.50
Mapping the pathways for O2 entry into and exit from myoglobin. J Biol Chem (2000) 2.31
A ubiquitously expressed human hexacoordinate hemoglobin. J Biol Chem (2002) 2.03
Transport of oxygen in muscle. Annu Rev Physiol (1989) 1.89
Characterization of a stellate cell activation-associated protein (STAP) with peroxidase activity found in rat hepatic stellate cells. J Biol Chem (2001) 1.85
Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin. Biophys J (2006) 1.80
Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. J Inorg Biochem (2005) 1.71
Computer simulations of carbon monoxide photodissociation in myoglobin: structural interpretation of the B states. Biophys J (1998) 1.56
Cytoglobin is a respiratory protein in connective tissue and neurons, which is up-regulated by hypoxia. J Biol Chem (2003) 1.54
Allosteric regulation and temperature dependence of oxygen binding in human neuroglobin and cytoglobin. Molecular mechanisms and physiological significance. J Biol Chem (2004) 1.51
Neuroglobin and cytoglobin overexpression protects human SH-SY5Y neuroblastoma cells against oxidative stress-induced cell death. Neurosci Lett (2006) 1.50
Nitric oxide moves myoglobin centre stage. Trends Biochem Sci (2001) 1.50
Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin. Biophys J (2004) 1.40
Cytoglobin/STAP, its unique localization in splanchnic fibroblast-like cells and function in organ fibrogenesis. Lab Invest (2004) 1.38
Structural dynamics of ligand diffusion in the protein matrix: A study on a new myoglobin mutant Y(B10) Q(E7) R(E10). Biophys J (1999) 1.29
Molecular dynamics simulation of sperm whale myoglobin: effects of mutations and trapped CO on the structure and dynamics of cavities. Biophys J (2005) 1.19
Mechanisms regulating the reactions of human hemoglobin with oxygen and carbon monoxide. Annu Rev Physiol (1990) 1.13
Crystal structure of cytoglobin: the fourth globin type discovered in man displays heme hexa-coordination. J Mol Biol (2004) 1.12
CO migration in native and mutant myoglobin: atomistic simulations for the understanding of protein function. Proc Natl Acad Sci U S A (2004) 1.09
Myoglobin cavities provide interior ligand pathway. Protein Sci (2004) 1.00
Structural basis of human cytoglobin for ligand binding. J Mol Biol (2004) 0.96
Mapping protein matrix cavities in human cytoglobin through Xe atom binding. Biochem Biophys Res Commun (2004) 0.92
A globin in every cell? Proc Natl Acad Sci U S A (2006) 0.76
Elastic properties of single amylose chains in water: a quantum mechanical and AFM study. J Am Chem Soc (2004) 0.93
Topology and thermodynamics of gaseous ligands diffusion paths in human neuroglobin. Biosystems (2008) 0.84
Molecular dynamics simulations of the photoactive protein nitrile hydratase. Biophys J (2008) 0.80
Molecular basis of lateral force spectroscopy nano-diagnostics: computational unbinding of autism related chemokine MCP-1 from IgG antibody. J Mol Model (2013) 0.77
Novel KRT14 mutation causing epidermolysis bullosa simplex with variable phenotype. Exp Dermatol (2014) 0.77
Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides. J Mol Model (2007) 0.76
Fibronectin module FN(III)9 adsorption at contrasting solid model surfaces studied by atomistic molecular dynamics. J Phys Chem B (2014) 0.75
Immune thrombocytopenia in patients with chronic lymphocytic leukemia treated with cladribine-based regiments or chlorambucil--follow-up of PALG-CLL randomized trials. Eur J Haematol (2013) 0.75
How computational studies of mosquito repellents contribute to the control of vector Borne Diseases. Curr Comput Aided Drug Des (2013) 0.75
Conformational sampling of a biomolecular rugged energy landscape. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75