Published in Novartis Found Symp on January 01, 2007
Absence of colony stimulation factor-1 receptor results in loss of microglia, disrupted brain development and olfactory deficits. PLoS One (2011) 1.92
Analysis of the transcriptional networks underpinning the activation of murine macrophages by inflammatory mediators. J Leukoc Biol (2014) 1.53
Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation. Mol Syst Biol (2011) 1.23
Identification of transcripts with enriched expression in the developing and adult pancreas. Genome Biol (2008) 1.06
A role for SNX5 in the regulation of macropinocytosis. BMC Cell Biol (2008) 0.97
Rapid release of cytoplasmic IL-15 from tumor-associated macrophages is an initial and critical event in IL-12-initiated tumor regression. Eur J Immunol (2009) 0.87
Biomechanical aspects of the auto-digestion theory. Mol Cell Biomech (2008) 0.77
Inhibition of inducible nitric oxide synthase expression by a novel small molecule activator of the unfolded protein response. Curr Chem Genomics (2008) 0.75
Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet (2006) 17.19
Interferon-gamma: an overview of signals, mechanisms and functions. J Leukoc Biol (2003) 12.34
A promoter-level mammalian expression atlas. Nature (2014) 6.25
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet (2009) 6.02
The mononuclear phagocyte system revisited. J Leukoc Biol (2002) 3.01
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PLoS Genet (2006) 2.48
Questing for circadian dependence in ST-segment-elevation acute myocardial infarction: a multicentric and multiethnic study. Circ Res (2013) 2.13
Transcriptional network dynamics in macrophage activation. Genomics (2006) 1.72
Mincle polarizes human monocyte and neutrophil responses to Candida albicans. Immunol Cell Biol (2012) 1.59
Disease-specific, neurosphere-derived cells as models for brain disorders. Dis Model Mech (2010) 1.57
Identification and predictive value of interleukin-6+ interleukin-10+ and interleukin-6- interleukin-10+ cytokine patterns in ST-elevation acute myocardial infarction. Circ Res (2012) 1.55
Variance of gene expression identifies altered network constraints in neurological disease. PLoS Genet (2011) 1.53
LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression. FASEB J (2006) 1.51
Genetic control of the innate immune response. BMC Immunol (2003) 1.50
From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks. Sci Rep (2013) 1.49
Gpnmb is induced in macrophages by IFN-gamma and lipopolysaccharide and acts as a feedback regulator of proinflammatory responses. J Immunol (2007) 1.37
Colony-stimulating factor-1 promotes kidney growth and repair via alteration of macrophage responses. Am J Pathol (2011) 1.37
Histone deacetylase inhibitors decrease Toll-like receptor-mediated activation of proinflammatory gene expression by impairing transcription factor recruitment. Immunology (2007) 1.35
Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans. Glycobiology (2008) 1.30
A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. Proc Natl Acad Sci U S A (2008) 1.30
Pirfenidone is renoprotective in diabetic kidney disease. J Am Soc Nephrol (2009) 1.29
A cross-study transcriptional analysis of Parkinson's disease. PLoS One (2009) 1.19
Inflammation suppressor genes: please switch out all the lights. J Leukoc Biol (2005) 1.17
Intramacrophage survival of uropathogenic Escherichia coli: differences between diverse clinical isolates and between mouse and human macrophages. Immunobiology (2011) 1.17
Defining an informativeness metric for clustering gene expression data. Bioinformatics (2011) 1.17
Coevolution within a transcriptional network by compensatory trans and cis mutations. Genome Res (2010) 1.16
Concordant epigenetic silencing of transforming growth factor-beta signaling pathway genes occurs early in breast carcinogenesis. Cancer Res (2007) 1.15
Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding. Bioinformatics (2013) 1.13
Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina. Proteomics (2010) 1.13
An inflammatory role for the mammalian carboxypeptidase inhibitor latexin: relationship to cystatins and the tumor suppressor TIG1. Structure (2005) 1.11
Phosphoregulators: protein kinases and protein phosphatases of mouse. Genome Res (2003) 1.11
Integrated approaches to uncovering transcription regulatory networks in mammalian cells. Genomics (2008) 1.09
First proteome of the egg perivitelline fluid of a freshwater gastropod with aerial oviposition. J Proteome Res (2012) 1.07
Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome. Genome Res (2003) 1.06
Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea. Mol Ecol (2013) 1.05
PU.1 and ICSBP control constitutive and IFN-gamma-regulated Tlr9 gene expression in mouse macrophages. J Leukoc Biol (2007) 1.04
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage. Genome Res (2003) 1.03
Systems biology of transcription control in macrophages. Bioessays (2007) 1.03
NRF2 activation restores disease related metabolic deficiencies in olfactory neurosphere-derived cells from patients with sporadic Parkinson's disease. PLoS One (2011) 1.02
Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes. Bioinformatics (2010) 1.02
Systems biology of innate immunity. Cell Immunol (2007) 1.01
Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach. Proteomics (2010) 1.01
The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. J Hered (2013) 1.00
The JNK are important for development and survival of macrophages. J Immunol (2006) 1.00
Bacterial community profiles in low microbial abundance sponges. FEMS Microbiol Ecol (2012) 1.00
attract: A method for identifying core pathways that define cellular phenotypes. PLoS One (2011) 0.99
Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering. Genome Biol (2010) 0.97
LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action. Immunobiology (2005) 0.93
An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction. J Neurosci (2009) 0.93
Transcription factor Tfec contributes to the IL-4-inducible expression of a small group of genes in mouse macrophages including the granulocyte colony-stimulating factor receptor. J Immunol (2005) 0.92
Induced pluripotent stem cells from ataxia-telangiectasia recapitulate the cellular phenotype. Stem Cells Transl Med (2012) 0.92
Quantitative proteomics identify molecular targets that are crucial in larval settlement and metamorphosis of Bugula neritina. J Proteome Res (2010) 0.87
The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions. Cell Microbiol (2015) 0.85
Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies. BMC Med Genomics (2013) 0.84
Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics. Environ Microbiol (2014) 0.84
Identifying co-regulating microRNA groups. J Bioinform Comput Biol (2010) 0.83
Phosphoinositide 3-kinase (PI3K(p110alpha)) directly regulates key components of the Z-disc and cardiac structure. J Biol Chem (2011) 0.82
Identification of unsafe human induced pluripotent stem cell lines using a robust surrogate assay for pluripotency. Stem Cells (2013) 0.82
Diversification of TOLLIP isoforms in mouse and man. Mamm Genome (2009) 0.82
Involvement of Wnt signaling pathways in the metamorphosis of the bryozoan Bugula neritina. PLoS One (2012) 0.81
The evolution of ultraconserved elements with different phylogenetic origins. BMC Evol Biol (2012) 0.81
Defining the protein interaction network of human malaria parasite Plasmodium falciparum. Genomics (2011) 0.81
SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification. PLoS One (2012) 0.80
GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater. FEMS Microbiol Ecol (2014) 0.80
Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle. BMC Syst Biol (2008) 0.80
Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease. Stem Cells Transl Med (2013) 0.80
Unexpected complexity of the reef-building coral Acropora millepora transcription factor network. BMC Syst Biol (2011) 0.80
Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49. Genome Announc (2014) 0.79
Proteomic changes between male and female worms of the polychaetous annelid Neanthes arenaceodentata before and after spawning. PLoS One (2013) 0.79
IL-12 and related cytokines: function and regulatory implications in Candida albicans infection. Clin Dev Immunol (2010) 0.78
Transcriptome and quantitative proteome analysis reveals molecular processes associated with larval metamorphosis in the polychaete Pseudopolydora vexillosa. J Proteome Res (2013) 0.78
Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina. Proteome Sci (2010) 0.77
Exploitation of genetic interaction network topology for the prediction of epistatic behavior. Genomics (2013) 0.77
Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system. J Struct Funct Genomics (2005) 0.77
Corrigendum: Divergent reprogramming routes lead to alternative stem-cell states. Nature (2015) 0.76
Proteomic and metabolomic profiles of marine Vibrio sp. 010 in response to an antifoulant challenge. Biofouling (2013) 0.76
Corrigendum: Genome-wide characterization of the routes to pluripotency. Nature (2015) 0.75
Correction: miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria. PLoS One (2016) 0.75
Proteomic profiling during the pre-competent to competent transition of the biofouling polychaete Hydroides elegans. Biofouling (2014) 0.75
Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks. Sci Rep (2015) 0.75
Mesenchymal stem cells cultured on magnetic nanowire substrates. Nanotechnology (2016) 0.75