Published in Dig Dis Sci on June 06, 2007
Microbial pathways in colonic sulfur metabolism and links with health and disease. Front Physiol (2012) 1.26
Endogenous production of H2S in the gastrointestinal tract: still in search of a physiologic function. Antioxid Redox Signal (2010) 1.15
Plant pathogenic bacteria utilize biofilm growth-associated repressor (BigR), a novel winged-helix redox switch, to control hydrogen sulfide detoxification under hypoxia. J Biol Chem (2011) 0.99
Hydrogen sulfide is an endogenous potentiator of T cell activation. J Biol Chem (2011) 0.96
Redox Biology of Hydrogen Sulfide: Implications for Physiology, Pathophysiology, and Pharmacology. Redox Biol (2013) 0.91
Sulphide quinone reductase contributes to hydrogen sulphide metabolism in murine peripheral tissues but not in the CNS. Br J Pharmacol (2012) 0.88
Taurocholic acid metabolism by gut microbes and colon cancer. Gut Microbes (2016) 0.87
Developing effective countermeasures against acute hydrogen sulfide intoxication: challenges and limitations. Ann N Y Acad Sci (2016) 0.76
H2S biosynthesis and catabolism: new insights from molecular studies. Cell Mol Life Sci (2016) 0.75
Is thiosulfate sulfurtransferase the colonic sulfide oxidase? Dig Dis Sci (2007) 0.75
Sulfur Cycling and the Intestinal Microbiome. Dig Dis Sci (2017) 0.75
Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (1970) 1528.65
Novel neural modulators. Annu Rev Neurosci (2003) 2.91
The smooth muscle relaxant effect of hydrogen sulphide in vitro: evidence for a physiological role to control intestinal contractility. Br J Pharmacol (2002) 2.05
Detoxification of hydrogen sulfide and methanethiol in the cecal mucosa. J Clin Invest (1999) 1.82
Rhodanese. Adv Enzymol Relat Areas Mol Biol (1973) 1.64
Evidence that hydrogen sulfide is a genotoxic agent. Mol Cancer Res (2006) 1.63
Oxidation of hydrogen sulfide and methanethiol to thiosulfate by rat tissues: a specialized function of the colonic mucosa. Biochem Pharmacol (2001) 1.61
Commensal bacteria, redox stress, and colorectal cancer: mechanisms and models. Exp Biol Med (Maywood) (2004) 1.51
Adaptative metabolic response of human colonic epithelial cells to the adverse effects of the luminal compound sulfide. Biochim Biophys Acta (2005) 1.18
Sulfur-containing amino acid metabolism in parasitic protozoa. Adv Parasitol (2005) 1.14
Sulphide impairment of substrate oxidation in rat colonocytes: a biochemical basis for ulcerative colitis? Clin Sci (Lond) (1993) 1.09
Mucosal protection against sulphide: importance of the enzyme rhodanese. Gut (2002) 1.02
3-Mercaptopyruvate sulfurtransferase of Leishmania contains an unusual C-terminal extension and is involved in thioredoxin and antioxidant metabolism. J Biol Chem (2002) 1.01
Sulfide-detoxifying enzymes in the human colon are decreased in cancer and upregulated in differentiation. Am J Physiol Gastrointest Liver Physiol (2006) 0.99
Evidence for a functional genetic polymorphism of the human thiosulfate sulfurtransferase (Rhodanese), a cyanide and H2S detoxification enzyme. Toxicology (2006) 0.85
Impaired detoxication of hydrogen sulfide in ulcerative colitis? Dig Dis Sci (2007) 0.82
Physiology of sulfide in the rat colon: use of bismuth to assess colonic sulfide production. J Appl Physiol (1985) (2002) 0.81
Sudden infant death syndrome: the colon connection. Med Hypotheses (2005) 0.75
Low S-adenosylmethionine concentrations found in patients with severe inflammatory bowel disease. Clin Chem Lab Med (2004) 0.75
The ASTRAL Compendium in 2004. Nucleic Acids Res (2004) 10.03
Super-resolution biomolecular crystallography with low-resolution data. Nature (2010) 6.14
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory. J Mol Biol (2002) 4.99
ASTRAL compendium enhancements. Nucleic Acids Res (2002) 4.43
Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J Mol Biol (2005) 4.02
Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure (2007) 3.16
Mechanism of folding chamber closure in a group II chaperonin. Nature (2010) 2.85
Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science (2009) 2.68
Near-native structure refinement using in vacuo energy minimization. Proc Natl Acad Sci U S A (2007) 2.12
Outcome of a workshop on applications of protein models in biomedical research. Structure (2009) 2.05
Free and acid-labile hydrogen sulfide concentrations in mouse tissues: anomalously high free hydrogen sulfide in aortic tissue. Antioxid Redox Signal (2011) 2.04
Small libraries of protein fragments model native protein structures accurately. J Mol Biol (2002) 1.87
Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure. Structure (2011) 1.71
Architecture of an RNA polymerase II transcription pre-initiation complex. Science (2013) 1.52
Simulating protein evolution in sequence and structure space. Curr Opin Struct Biol (2004) 1.50
A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristics. J Mol Biol (2003) 1.46
Protein topology and stability define the space of allowed sequences. Proc Natl Acad Sci U S A (2002) 1.46
A comprehensive analysis of 40 blind protein structure predictions. BMC Struct Biol (2002) 1.37
Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling. Proc Natl Acad Sci U S A (2012) 1.36
A major role for carbon monoxide as an endogenous hyperpolarizing factor in the gastrointestinal tract. Proc Natl Acad Sci U S A (2003) 1.35
Solvent dramatically affects protein structure refinement. Proc Natl Acad Sci U S A (2008) 1.29
KoBaMIN: a knowledge-based minimization web server for protein structure refinement. Nucleic Acids Res (2012) 1.25
Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. Proc Natl Acad Sci U S A (2004) 1.23
An atomic environment potential for use in protein structure prediction. J Mol Biol (2005) 1.19
Describing RNA structure by libraries of clustered nucleotide doublets. J Mol Biol (2005) 1.18
RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proc Natl Acad Sci U S A (2010) 1.17
Improved protein structure selection using decoy-dependent discriminatory functions. BMC Struct Biol (2004) 1.15
Nonpolar solutes enhance water structure within hydration shells while reducing interactions between them. Proc Natl Acad Sci U S A (2005) 1.14
Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle. EMBO J (2011) 1.12
Evidence of turn and salt bridge contributions to beta-hairpin stability: MD simulations of C-terminal fragment from the B1 domain of protein G. Biophys Chem (2002) 1.12
Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution. Proteins (2004) 1.09
Improving the accuracy of macromolecular structure refinement at 7 Å resolution. Structure (2012) 1.06
Sequence variations within protein families are linearly related to structural variations. J Mol Biol (2002) 1.06
Probing protein fold space with a simplified model. J Mol Biol (2007) 1.03
Funnel sculpting for in silico assembly of secondary structure elements of proteins. Proc Natl Acad Sci U S A (2003) 1.02
Modeling and design by hierarchical natural moves. Proc Natl Acad Sci U S A (2012) 1.02
Lactose intolerance and health. Evid Rep Technol Assess (Full Rep) (2010) 1.01
Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation. RNA (2011) 1.01
Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum. Acta Crystallogr D Biol Crystallogr (2012) 1.00
Roles of mutation and recombination in the evolution of protein thermodynamics. Proc Natl Acad Sci U S A (2002) 1.00
Consistent refinement of submitted models at CASP using a knowledge-based potential. Proteins (2010) 1.00
Can morphing methods predict intermediate structures? J Mol Biol (2008) 0.99
Conformational optimization with natural degrees of freedom: a novel stochastic chain closure algorithm. J Comput Biol (2010) 0.99
Clustering to identify RNA conformations constrained by secondary structure. Proc Natl Acad Sci U S A (2011) 0.98
Modeling nucleic acids. Curr Opin Struct Biol (2012) 0.98
Influence of mulberry leaf extract on the blood glucose and breath hydrogen response to ingestion of 75 g sucrose by type 2 diabetic and control subjects. Diabetes Care (2007) 0.98
Improved recognition of native-like protein structures using a family of designed sequences. Proc Natl Acad Sci U S A (2002) 0.97
Impact of injury location and severity on posttraumatic epilepsy in the rat: role of frontal neocortex. Cereb Cortex (2010) 0.93
The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning. Structure (2013) 0.93
Generalized ensemble methods for de novo structure prediction. Proc Natl Acad Sci U S A (2009) 0.93
Evolutionarily consistent families in SCOP: sequence, structure and function. BMC Struct Biol (2012) 0.92
Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images. Proc Natl Acad Sci U S A (2012) 0.91
Inhibition mechanism of the acetylcholine receptor by alpha-neurotoxins as revealed by normal-mode dynamics. Biochemistry (2008) 0.90
Design of an optimal Chebyshev-expanded discrimination function for globular proteins. Protein Sci (2002) 0.90
MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures. Bioinformatics (2010) 0.90
On the universe of protein folds. Annu Rev Biophys (2013) 0.89
Spatial regulation and the rate of signal transduction activation. PLoS Comput Biol (2006) 0.88
WeFold: a coopetition for protein structure prediction. Proteins (2014) 0.88
Protein segment finder: an online search engine for segment motifs in the PDB. Nucleic Acids Res (2008) 0.88
Comparative modeling and protein-like features of hydrophobic-polar models on a two-dimensional lattice. Proteins (2012) 0.87
How hydrophobic buckminsterfullerene affects surrounding water structure. J Phys Chem B (2008) 0.85
Insights into the intra-ring subunit order of TRiC/CCT: a structural and evolutionary analysis. Pac Symp Biocomput (2010) 0.83
Multimodality treatment of complex unruptured cavernous and paraclinoid aneurysms. Neurosurgery (2014) 0.83
Bowel problems, self-care practices, and information needs of colorectal cancer survivors at 6 to 24 months after sphincter-saving surgery. Cancer Nurs (2008) 0.83
Training-free atomistic prediction of nucleosome occupancy. Proc Natl Acad Sci U S A (2014) 0.83
Population-based screening for Lynch syndrome in Western Australia. Int J Cancer (2014) 0.81
Physiology of sulfide in the rat colon: use of bismuth to assess colonic sulfide production. J Appl Physiol (1985) (2002) 0.81
Remarkable patterns of surface water ordering around polarized buckminsterfullerene. Proc Natl Acad Sci U S A (2011) 0.81
Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes. Biophys J (2011) 0.81
Simulations of RNA base pairs in a nanodroplet reveal solvation-dependent stability. Proc Natl Acad Sci U S A (2007) 0.81
Normal modes of prion proteins: from native to infectious particle. Biochemistry (2011) 0.80
Outcomes in patients undergoing urgent colorectal surgery. ANZ J Surg (2014) 0.79
Evaluating mixture models for building RNA knowledge-based potentials. J Bioinform Comput Biol (2012) 0.79
Anastomotic leaks in colorectal surgery. ANZ J Surg (2014) 0.78
Improvement in oral chronic graft-versus-host disease with the administration of effervescent tablets of topical budesonide-an open, randomized, multicenter study. Biol Blood Marrow Transplant (2011) 0.77
Intraorbital access using fluoroscopic flat panel detector CT navigation and three-dimensional MRI overlay. J Neurointerv Surg (2010) 0.77
A mixture of extracts of black and green teas and mulberry leaf did not reduce weight gain in rats fed a high-fat diet. Altern Med Rev (2008) 0.75
Arsenic trioxide and olanzapine co-administration: case analysis. J Oncol Pharm Pract (2009) 0.75
Microsurgical clipping of an unruptured basilar apex aneurysm. Neurosurg Focus (2015) 0.75
Emerging β-sheet rich conformations in super-compact Huntingtin exon-1 mutant structures. J Am Chem Soc (2017) 0.75