Published in PLoS Genet on May 07, 2007
Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2. Plant Physiol (2008) 1.86
Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet (2009) 1.49
Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray. Plant Cell Physiol (2008) 1.27
Ontogeny of the maize shoot apical meristem. Plant Cell (2012) 1.26
Auxin and monocot development. Cold Spring Harb Perspect Biol (2010) 1.22
WOX4 promotes procambial development. Plant Physiol (2009) 1.20
Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol (2008) 1.20
Interdisciplinary training in mathematical biology through team-based undergraduate research and courses. CBE Life Sci Educ (2010) 1.17
Microdissection of shoot meristem functional domains. PLoS Genet (2009) 1.15
LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice. Plant Cell (2015) 1.14
Characterization of transcriptome remodeling during cambium formation identifies MOL1 and RUL1 as opposing regulators of secondary growth. PLoS Genet (2011) 1.06
ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves. Plant Cell (2010) 1.03
Transcription repressor HANABA TARANU controls flower development by integrating the actions of multiple hormones, floral organ specification genes, and GATA3 family genes in Arabidopsis. Plant Cell (2013) 1.00
Maize LAZY1 mediates shoot gravitropism and inflorescence development through regulating auxin transport, auxin signaling, and light response. Plant Physiol (2013) 0.91
A maize thiamine auxotroph is defective in shoot meristem maintenance. Plant Cell (2010) 0.90
Systems biology update: cell type-specific transcriptional regulatory networks. Plant Physiol (2009) 0.84
Genetic control of maize shoot apical meristem architecture. G3 (Bethesda) (2014) 0.83
Discolored1 (DSC1) is an ADP-Ribosylation Factor-GTPase Activating Protein Required to Maintain Differentiation of Maize Kernel Structures. Front Plant Sci (2012) 0.79
Subtissue-specific evaluation of promoter efficiency by quantitative fluorometric assay in laser microdissected tissues of rapeseed. Plant Physiol (2011) 0.79
HANABA TARANU (HAN) Bridges Meristem and Organ Primordia Boundaries through PINHEAD, JAGGED, BLADE-ON-PETIOLE2 and CYTOKININ OXIDASE 3 during Flower Development in Arabidopsis. PLoS Genet (2015) 0.77
Cucumber SUPERMAN has conserved function in stamen and fruit development and a distinct role in floral patterning. PLoS One (2014) 0.77
Low temperature-induced DNA hypermethylation attenuates expression of RhAG, an AGAMOUS homolog, and increases petal number in rose (Rosa hybrida). BMC Plant Biol (2015) 0.77
Sucrose Transporter ZmSut1 Expression and Localization Uncover New Insights into Sucrose Phloem Loading. Plant Physiol (2016) 0.75
Expression pattern of Class B gene PAP3 in flower development of pepper. Int J Mol Sci (2013) 0.75
Laser capture microdissection in Ectocarpus siliculosus: the pathway to cell-specific transcriptomics in brown algae. Front Plant Sci (2015) 0.75
Overexpression of the WOX gene STENOFOLIA improves biomass yield and sugar release in transgenic grasses and display altered cytokinin homeostasis. PLoS Genet (2017) 0.75
Punctate vascular expression1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiol (2012) 0.75
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res (2002) 40.03
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell (2004) 21.30
Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell (2003) 11.53
A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature (1996) 9.53
The F-box protein TIR1 is an auxin receptor. Nature (2005) 9.45
Regulation of phyllotaxis by polar auxin transport. Nature (2003) 9.17
Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature (2003) 8.75
The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature (2005) 8.70
Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell (1998) 8.33
Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res (2006) 7.10
Sugar sensing and signaling in plants: conserved and novel mechanisms. Annu Rev Plant Biol (2006) 7.03
The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell (2003) 6.95
Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr Biol (2005) 6.35
Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell (2000) 5.96
Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science (2000) 5.91
microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature (2004) 4.30
Statistical methods for identifying differentially expressed genes in DNA microarrays. Methods Mol Biol (2003) 4.28
A dominant mutation in the maize homeobox gene, Knotted-1, causes its ectopic expression in leaf cells with altered fates. Development (1992) 4.21
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development (2004) 3.93
WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature (2005) 3.89
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell (2004) 3.56
Dead-box proteins: a family affair--active and passive players in RNP-remodeling. Nucleic Acids Res (2006) 3.26
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (2005) 2.97
Chloroplast division in higher plants requires members of two functionally divergent gene families with homology to bacterial ftsZ. Plant Cell (1998) 2.56
Molecular players regulating the jasmonate signalling network. Curr Opin Plant Biol (2005) 2.50
Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities. Development (2004) 2.24
The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell (2004) 2.08
An Arabidopsis mutant defective in jasmonate response is allelic to the auxin-signaling mutant axr1. Plant Physiol (2002) 2.01
Plants: the latest model system for G-protein research. EMBO Rep (2004) 1.85
Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J (2005) 1.85
ASYMMETRIC LEAVES1 and auxin activities converge to repress BREVIPEDICELLUS expression and promote leaf development in Arabidopsis. Development (2006) 1.83
Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Curr Biol (2005) 1.80
The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems. Development (2004) 1.76
A homeobox gene, PRESSED FLOWER, regulates lateral axis-dependent development of Arabidopsis flowers. Genes Dev (2001) 1.71
The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. EMBO J (2004) 1.67
Global expression profiling applied to plant development. Curr Opin Plant Biol (2004) 1.65
The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain. Development (1996) 1.56
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol (2005) 1.55
VAN3 ARF-GAP-mediated vesicle transport is involved in leaf vascular network formation. Development (2005) 1.53
A turanose-insensitive mutant suggests a role for WOX5 in auxin homeostasis in Arabidopsis thaliana. Plant J (2005) 1.47
The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res (1999) 1.45
Transcriptional profiling of the Arabidopsis embryo. Plant Physiol (2006) 1.40
SCARFACE encodes an ARF-GAP that is required for normal auxin efflux and vein patterning in Arabidopsis. Plant Cell (2006) 1.37
Two-component phosphorelay signal transduction systems in plants: from hormone responses to circadian rhythms. Biosci Biotechnol Biochem (2005) 1.37
Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics (2007) 1.28
The polar auxin transport inhibitor N-1-naphthylphthalamic acid disrupts leaf initiation, KNOX protein regulation, and formation of leaf margins in maize. Plant Physiol (2003) 1.25
The PRETTY FEW SEEDS2 gene encodes an Arabidopsis homeodomain protein that regulates ovule development. Development (2005) 1.22
A discussion of statistical methods for design and analysis of microarray experiments for plant scientists. Plant Cell (2006) 1.21
Laser microdissection of plant tissue: what you see is what you get. Annu Rev Plant Biol (2006) 1.21
NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development (2000) 1.20
Progress in maize gene discovery: a project update. Funct Integr Genomics (2002) 1.18
Molecular characterization of His-Asp phosphorelay signaling factors in maize leaves: implications of the signal divergence by cytokinin-inducible response regulators in the cytosol and the nuclei. Plant Mol Biol (2003) 1.14
Optimized RNA amplification using T7-RNA-polymerase based in vitro transcription. Anal Biochem (2004) 1.09
Clonal sectors reveal that a specific meristematic domain is not utilized in the maize mutant narrow sheath. Dev Biol (1997) 1.06
The narrow sheath duplicate genes: sectors of dual aneuploidy reveal ancestrally conserved gene functions during maize leaf development. Genetics (2000) 1.05
Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J (2006) 1.05
The identification of inducible cytoplasmic/nuclear carbohydrate-binding proteins urges to develop novel concepts about the role of plant lectins. Glycoconj J (2004) 0.96
SYBR green and TaqMan real-time PCR assays are equivalent for the diagnosis of dengue virus type 3 infections. J Med Virol (2006) 0.89
Ethylene regulates monomeric GTP-binding protein gene expression and activity in Arabidopsis. Plant Physiol (2003) 0.87
Increases in jasmonic acid caused by indole-3-acetic acid and auxin herbicides in cleavers (Galium aparine). J Plant Physiol (2004) 0.80
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res (2006) 7.10
A first-generation haplotype map of maize. Science (2009) 6.82
SNP discovery via 454 transcriptome sequencing. Plant J (2007) 5.92
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet (2009) 3.88
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Prevalent abnormal prion protein in human appendixes after bovine spongiform encephalopathy epizootic: large scale survey. BMJ (2013) 2.74
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci U S A (2006) 2.68
Frontotemporal dementia with the C9ORF72 hexanucleotide repeat expansion: clinical, neuroanatomical and neuropathological features. Brain (2012) 2.65
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
BarleyBase--an expression profiling database for plant genomics. Nucleic Acids Res (2005) 2.34
Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proc Natl Acad Sci U S A (2005) 2.27
Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates. Stat Appl Genet Mol Biol (2012) 2.13
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J (2007) 2.11
Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize. Proc Natl Acad Sci U S A (2002) 1.98
Genomics, prior probability, and statistical tests of multiple hypotheses. Genome Res (2004) 1.96
Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol (2011) 1.94
Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics (2006) 1.89
Picky: oligo microarray design for large genomes. Bioinformatics (2004) 1.83
A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics (2004) 1.83
Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev (2007) 1.81
Crop genome sequencing: lessons and rationales. Trends Plant Sci (2011) 1.77
Genetic regulation of gene expression during shoot development in Arabidopsis. Genetics (2005) 1.77
Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. BMC Biol (2008) 1.77
The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems. Development (2004) 1.76
Parallel domestication of the Shattering1 genes in cereals. Nat Genet (2012) 1.75
Developmental transcript profiling of cyst nematode feeding cells in soybean roots. Mol Plant Microbe Interact (2007) 1.74
Exploring the information in p-values for the analysis and planning of multiple-test experiments. Biometrics (2007) 1.71
Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet (2009) 1.70
Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (2009) 1.65
The physical and genetic framework of the maize B73 genome. PLoS Genet (2009) 1.64
Parallel genome-wide expression profiling of host and pathogen during soybean cyst nematode infection of soybean. Mol Plant Microbe Interact (2007) 1.57
Interaction-dependent gene expression in Mla-specified response to barley powdery mildew. Plant Cell (2004) 1.56
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol (2005) 1.55
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet (2009) 1.54
Heritable epigenetic variation among maize inbreds. PLoS Genet (2011) 1.54
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell (2011) 1.53
A novel protective prion protein variant that colocalizes with kuru exposure. N Engl J Med (2009) 1.53
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One (2008) 1.53
A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics (2006) 1.51
Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet (2009) 1.49
Parallel short sequence assembly of transcriptomes. BMC Bioinformatics (2009) 1.47
Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol (2006) 1.47
Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics (2006) 1.45
Inherited prion disease with 4-octapeptide repeat insertion: disease requires the interaction of multiple genetic risk factors. Brain (2011) 1.45
Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol (2014) 1.45
Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles. Plant J (2003) 1.42
Homozygosity for the C9orf72 GGGGCC repeat expansion in frontotemporal dementia. Acta Neuropathol (2013) 1.41
The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol (2005) 1.41
Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol (2012) 1.37
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol (2010) 1.37
Transcriptional profiling of myostatin-knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy. FASEB J (2006) 1.36
Repeat subtraction-mediated sequence capture from a complex genome. Plant J (2010) 1.31
The ALDH gene superfamily of Arabidopsis. Trends Plant Sci (2004) 1.30
Pooling mRNA in microarray experiments and its effect on power. Bioinformatics (2007) 1.29
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet (2009) 1.29
Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics (2007) 1.28
The expression domain of PHANTASTICA determines leaflet placement in compound leaves. Nature (2003) 1.28
Gene mapping via bulked segregant RNA-Seq (BSR-Seq). PLoS One (2012) 1.28
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol (2004) 1.27
Ontogeny of the maize shoot apical meristem. Plant Cell (2012) 1.26
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26
Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet (2012) 1.25
The maize (Zea mays L.) roothairless 3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. Plant J (2008) 1.25
CmeR functions as a pleiotropic regulator and is required for optimal colonization of Campylobacter jejuni in vivo. J Bacteriol (2008) 1.24
Spatial analysis of arabidopsis thaliana gene expression in response to Turnip mosaic virus infection. Mol Plant Microbe Interact (2007) 1.23
Characterization of two GL8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. Plant J (2005) 1.22
WOX4 promotes procambial development. Plant Physiol (2009) 1.20
Tissue specificity and evolution of meristematic WOX3 function. Plant Physiol (2008) 1.20
Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res (2012) 1.20
Light-dependent death of maize lls1 cells is mediated by mature chloroplasts. Plant Physiol (2002) 1.20
High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics (2009) 1.19
B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol (2011) 1.18