Published in Nat Genet on May 13, 2012
Evolution of crop species: genetics of domestication and diversification. Nat Rev Genet (2013) 2.59
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet (2013) 1.58
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics (2013) 1.46
Current perspectives and the future of domestication studies. Proc Natl Acad Sci U S A (2014) 1.45
Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus. PLoS One (2014) 1.21
From many, one: genetic control of prolificacy during maize domestication. PLoS Genet (2013) 1.06
Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato. Mol Genet Genomics (2013) 1.05
Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production. Genome Biol (2013) 1.04
Genetic control and comparative genomic analysis of flowering time in Setaria (Poaceae). G3 (Bethesda) (2013) 0.97
Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor. G3 (Bethesda) (2013) 0.95
Expression profiling of tomato pre-abscission pedicels provides insights into abscission zone properties including competence to respond to abscission signals. BMC Plant Biol (2013) 0.94
The role of cis regulatory evolution in maize domestication. PLoS Genet (2014) 0.90
Genetic control of inflorescence architecture during rice domestication. Nat Commun (2013) 0.90
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Seed shattering: from models to crops. Front Plant Sci (2015) 0.90
Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. Plant Cell (2014) 0.89
Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon. Breed Sci (2014) 0.88
Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication. Proc Natl Acad Sci U S A (2013) 0.88
Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits. G3 (Bethesda) (2013) 0.87
Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication. Proc Natl Acad Sci U S A (2014) 0.87
The tomato genome: implications for plant breeding, genomics and evolution. Genome Biol (2012) 0.85
Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families. G3 (Bethesda) (2014) 0.85
Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. PLoS One (2014) 0.84
Genetic analysis of inflorescence and plant height components in sorghum (Panicoidae) and comparative genetics with rice (Oryzoidae). BMC Plant Biol (2015) 0.84
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. Nat Genet (2016) 0.83
Identifying the genes underlying quantitative traits: a rationale for the QTN programme. AoB Plants (2014) 0.83
Use of multicopy transposons bearing unfitness genes in weed control: four example scenarios. Plant Physiol (2014) 0.82
Development and regulation of pedicel abscission in tomato. Front Plant Sci (2015) 0.82
Sequence and expression variations suggest an adaptive role for the DA1-like gene family in the evolution of soybeans. BMC Plant Biol (2015) 0.81
Identification and fine mapping of quantitative trait loci for the number of vascular bundle in maize stem. J Integr Plant Biol (2015) 0.80
Comparative transcriptomics uncovers alternative splicing changes and signatures of selection from maize improvement. BMC Genomics (2015) 0.78
The genetic architecture of leaf number and its genetic relationship to flowering time in maize. New Phytol (2015) 0.78
Complex genetic architecture underlies maize tassel domestication. New Phytol (2017) 0.78
Genetic, evolutionary and plant breeding insights from the domestication of maize. Elife (2015) 0.77
Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor × S. propinquum population. Mol Breed (2012) 0.77
Fine Mapping of a QTL Associated with Kernel Row Number on Chromosome 1 of Maize. PLoS One (2016) 0.77
The genomics of microbial domestication in the fermented food environment. Curr Opin Genet Dev (2015) 0.77
Quantitative trait loci from identification to exploitation for crop improvement. Plant Cell Rep (2017) 0.77
One gene's shattering effects. Nat Genet (2012) 0.76
TOND1 confers tolerance to nitrogen deficiency in rice. Plant J (2015) 0.76
De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.). BMC Genomics (2016) 0.75
Genetic Analysis of Kernel Traits in Maize-Teosinte Introgression Populations. G3 (Bethesda) (2016) 0.75
The potential of pale flax as a source of useful genetic variation for cultivated flax revealed through molecular diversity and association analyses. Mol Breed (2014) 0.75
Domestication-driven Gossypium profilin 1 (GhPRF1) gene transduces early flowering phenotype in tobacco by spatial alteration of apical/floral-meristem related gene expression. BMC Plant Biol (2016) 0.75
Molecular evolution of the Sorghum Maturity Gene Ma3. PLoS One (2015) 0.75
A Gene for Genetic Background in Zea mays: Fine-Mapping enhancer of teosinte branched1.2 to a YABBY Class Transcription Factor. Genetics (2016) 0.75
A Comprehensive Phenotypic Investigation of the "Pod-Shattering Syndrome" in Common Bean. Front Plant Sci (2017) 0.75
Histological Characteristics, Cell Wall Hydrolytic Enzymes Activity and Candidate Genes Expression Associated with Seed Shattering of Elymus sibiricus Accessions. Front Plant Sci (2017) 0.75
Selection During Maize Domestication Targeted a Gene Network Controlling Plant and Inflorescence Architecture. Genetics (2017) 0.75
Domestication reduces alternative splicing expression variations in sorghum. PLoS One (2017) 0.75
Beans (Phaseolus ssp.) as a Model for Understanding Crop Evolution. Front Plant Sci (2017) 0.75
Reduced weed seed shattering by silencing a cultivated rice gene: strategic mitigation for escaped transgenes. Transgenic Res (2017) 0.75
Whole-Genome Analysis of Candidate genes Associated with Seed Size and Weight in Sorghum bicolor Reveals Signatures of Artificial Selection and Insights into Parallel Domestication in Cereal Crops. Front Plant Sci (2017) 0.75
MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics (1987) 54.39
R/qtl: QTL mapping in experimental crosses. Bioinformatics (2003) 22.38
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics (2005) 15.95
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
A tutorial on statistical methods for population association studies. Nat Rev Genet (2006) 12.49
The molecular genetics of crop domestication. Cell (2006) 6.71
Convergent domestication of cereal crops by independent mutations at corresponding genetic Loci. Science (1995) 5.52
Rice domestication by reducing shattering. Science (2006) 5.11
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol (2011) 4.84
Genetic analysis of the morphological differences between maize and teosinte. Genetics (1991) 4.79
An SNP caused loss of seed shattering during rice domestication. Science (2006) 4.78
Genome relationships: the grass model in current research. Plant Cell (2000) 3.25
Molecular characterization of the major wheat domestication gene Q. Genetics (2005) 2.53
Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara. New Phytol (2006) 2.09
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet (2008) 1.88
Two evolutionary histories in the genome of rice: the roles of domestication genes. PLoS Genet (2011) 1.63
Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa). Theor Appl Genet (2005) 1.56
Origin of seed shattering in rice (Oryza sativa L.). Planta (2007) 1.55
Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication. Genome (2007) 1.13
Map-based analysis of genes affecting the brittle rachis character in tetraploid wheat (Triticum turgidum L.). Theor Appl Genet (2005) 1.09
RFLP-based assay of Sorghum bicolor (L.) Moench genetic diversity. Theor Appl Genet (1995) 0.88
Identification of AFLP makers linked to non-seed shattering locus (sht1) in buckwheat and conversion to STS markers for marker-assisted selection. Genome (2004) 0.81
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
The genetic architecture of maize flowering time. Science (2009) 9.27
Mixed linear model approach adapted for genome-wide association studies. Nat Genet (2010) 8.47
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci U S A (2002) 7.49
Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res (2006) 7.10
SNP discovery via 454 transcriptome sequencing. Plant J (2007) 5.92
Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J (2005) 4.59
Early allelic selection in maize as revealed by ancient DNA. Science (2003) 4.38
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat Genet (2006) 3.97
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet (2009) 3.88
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics (2003) 3.57
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48
A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nat Genet (2007) 3.19
Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol (2002) 3.03
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci U S A (2006) 2.68
Molecular characterization of the major wheat domestication gene Q. Genetics (2005) 2.53
Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proc Natl Acad Sci U S A (2010) 2.52
Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet (2011) 2.42
Control of a key transition from prostrate to erect growth in rice domestication. Nat Genet (2008) 2.42
Genetic diversity and population structure of teosinte. Genetics (2005) 2.31
Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proc Natl Acad Sci U S A (2005) 2.27
Dicamba resistance: enlarging and preserving biotechnology-based weed management strategies. Science (2007) 2.19
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci U S A (2009) 2.19
Population structure and genetic diversity of New World maize races assessed by DNA microsatellites. Am J Bot (2008) 2.15
Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3. Plant Cell (2010) 2.15
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J (2007) 2.11
Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean. Science (2012) 2.01
Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte. Genetics (2002) 1.98
Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize. Proc Natl Acad Sci U S A (2002) 1.98
Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Curr Biol (2011) 1.94
Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics (2006) 1.89
RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J Virol (2005) 1.86
Picky: oligo microarray design for large genomes. Bioinformatics (2004) 1.83
A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics (2004) 1.83
Greenhouse and field testing of transgenic wheat plants stably expressing genes for thaumatin-like protein, chitinase and glucanase against Fusarium graminearum. J Exp Bot (2003) 1.81
Crop genome sequencing: lessons and rationales. Trends Plant Sci (2011) 1.77
Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat. Genetics (2003) 1.76
Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet (2009) 1.70
Linkage mapping of domestication loci in a large maize teosinte backcross resource. Genetics (2007) 1.66
Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (2009) 1.65
The physical and genetic framework of the maize B73 genome. PLoS Genet (2009) 1.64
Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res (2006) 1.62
Patterns of diversity and recombination along chromosome 1 of maize (Zea mays ssp. mays L.). Genetics (2002) 1.60
Duplicate FLORICAULA/LEAFY homologs zfl1 and zfl2 control inflorescence architecture and flower patterning in maize. Development (2003) 1.58
Origin of seed shattering in rice (Oryza sativa L.). Planta (2007) 1.55
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol (2005) 1.55
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet (2009) 1.54
Heritable epigenetic variation among maize inbreds. PLoS Genet (2011) 1.54
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell (2011) 1.53
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One (2008) 1.53
Genetically engineered resistance to Fusarium head blight in wheat by expression of Arabidopsis NPR1. Mol Plant Microbe Interact (2006) 1.52
Quality of pharmacies in Pakistan: a cross-sectional survey. Int J Qual Health Care (2005) 1.51
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J Exp Bot (2009) 1.49
Regulation of small RNA accumulation in the maize shoot apex. PLoS Genet (2009) 1.49
Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum. BMC Genomics (2011) 1.48
Parallel short sequence assembly of transcriptomes. BMC Bioinformatics (2009) 1.47
Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics (2006) 1.45
Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol (2014) 1.45
MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light. Plant Cell (2011) 1.43
The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol (2005) 1.41
Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol (2012) 1.37
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol (2010) 1.37
Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. PLoS Genet (2007) 1.35
Genetic variation for phenotypically invariant traits detected in teosinte: implications for the evolution of novel forms. Genetics (2002) 1.35
An analysis of genetic diversity across the maize genome using microsatellites. Genetics (2005) 1.35
New frontiers in oilseed biotechnology: meeting the global demand for vegetable oils for food, feed, biofuel, and industrial applications. Curr Opin Biotechnol (2010) 1.32
Repeat subtraction-mediated sequence capture from a complex genome. Plant J (2010) 1.31
The ALDH gene superfamily of Arabidopsis. Trends Plant Sci (2004) 1.30
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet (2009) 1.29
Fusarium graminearum-induced changes in gene expression between Fusarium head blight-resistant and susceptible wheat cultivars. Funct Integr Genomics (2006) 1.28
Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics (2007) 1.28
Gene mapping via bulked segregant RNA-Seq (BSR-Seq). PLoS One (2012) 1.28
Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theor Appl Genet (2009) 1.27
Ontogeny of the maize shoot apical meristem. Plant Cell (2012) 1.26
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26