Adenovirus virus-associated RNAII-derived small RNAs are efficiently incorporated into the rna-induced silencing complex and associate with polyribosomes.

PubWeight™: 1.25‹?› | Rank: Top 10%

🔗 View Article (PMC 2045446)

Published in J Virol on July 25, 2007

Authors

Ning Xu1, Bo Segerman, Xiaofu Zhou, Göran Akusjärvi

Author Affiliations

1: Department of Medical Biochemistry and Microbiology, Uppsala Biomedical Center, Husargatan 3, S-751 23 Uppsala, Sweden.

Articles citing this

Viruses, microRNAs, and host interactions. Annu Rev Microbiol (2010) 3.30

Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PLoS Pathog (2010) 2.62

Viral and cellular messenger RNA targets of viral microRNAs. Nature (2009) 2.52

Human cellular restriction factors that target HIV-1 replication. BMC Med (2009) 1.86

The roles of microRNAs in mammalian virus infection. Biochim Biophys Acta (2008) 1.64

Noncoding flavivirus RNA displays RNA interference suppressor activity in insect and Mammalian cells. J Virol (2012) 1.58

Murine Polyomavirus encodes a microRNA that cleaves early RNA transcripts but is not essential for experimental infection. Virology (2009) 1.42

Ebolavirus proteins suppress the effects of small interfering RNA by direct interaction with the mammalian RNA interference pathway. J Virol (2011) 1.28

Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair. Nucleic Acids Res (2009) 1.08

Long non-coding RNAs (lncRNAs) and viral infections. Biomed Pharmacother (2013) 0.98

A viral noncoding RNA generated by cis-element-mediated protection against 5'->3' RNA decay represses both cap-independent and cap-dependent translation. J Virol (2008) 0.97

Mammalian alphaherpesvirus miRNAs. Biochim Biophys Acta (2011) 0.93

Insights into cellular factors that regulate HIV-1 replication in human cells. Biochemistry (2011) 0.92

The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells. Nucleic Acids Res (2013) 0.87

Identification and validation of human papillomavirus encoded microRNAs. PLoS One (2013) 0.86

Noncoding RNPs of viral origin. Cold Spring Harb Perspect Biol (2011) 0.86

Identification of RISC-associated adenoviral microRNAs, a subset of their direct targets, and global changes in the targetome upon lytic adenovirus 5 infection. J Virol (2014) 0.84

Current knowledge of MicroRNAs and noncoding RNAs in virus-infected cells. Methods Mol Biol (2010) 0.84

The 5'-end heterogeneity of adenovirus virus-associated RNAI contributes to the asymmetric guide strand incorporation into the RNA-induced silencing complex. Nucleic Acids Res (2009) 0.83

Dicer's role as an antiviral: still an enigma. Curr Opin Immunol (2013) 0.82

Long Non-Coding RNAs in Infection Biology. Front Genet (2013) 0.81

Persistently adenovirus-infected lymphoid cells express microRNAs derived from the viral VAI and especially VAII RNA. Virology (2013) 0.81

Adenoviral protein V promotes a process of viral assembly through nucleophosmin 1. Virology (2012) 0.79

ESF-EMBO symposium: antiviral applications of RNA interference. Retrovirology (2008) 0.78

Small RNA sequence analysis of adenovirus VA RNA-derived miRNAs reveals an unexpected serotype-specific difference in structure and abundance. PLoS One (2014) 0.77

Dicer functions as an antiviral system against human adenoviruses via cleavage of adenovirus-encoded noncoding RNA. Sci Rep (2016) 0.77

Helper virus-mediated downregulation of transgene expression permits production of recalcitrant helper-dependent adenoviral vector. Mol Ther Methods Clin Dev (2016) 0.77

Virus meets RNAi. Symposium on antiviral applications of RNA interference. EMBO Rep (2008) 0.77

HIV-1 RRE RNA acts as an RNA silencing suppressor by competing with TRBP-bound siRNAs. RNA Biol (2015) 0.76

Adenovirus Vector-Derived VA-RNA-Mediated Innate Immune Responses. Pharmaceutics (2011) 0.76

DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs. Genes Dev (2016) 0.75

MicroRNAs as Important Players in Host-Adenovirus Interactions. Front Microbiol (2017) 0.75

Articles cited by this

MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell (2005) 96.87

The functions of animal microRNAs. Nature (2004) 64.85

Asymmetry in the assembly of the RNAi enzyme complex. Cell (2003) 22.18

Specificity of microRNA target selection in translational repression. Genes Dev (2004) 21.14

Functional siRNAs and miRNAs exhibit strand bias. Cell (2003) 19.15

The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol (1999) 17.82

Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science (2005) 16.84

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol Cell (2004) 16.10

Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev (2006) 15.20

Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science (2005) 13.84

Identification of microRNAs of the herpesvirus family. Nat Methods (2005) 12.98

Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. Proc Natl Acad Sci U S A (2003) 7.95

Short RNAs repress translation after initiation in mammalian cells. Mol Cell (2006) 6.70

SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature (2005) 5.54

Viruses and microRNAs. Nat Genet (2006) 4.54

Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic Acids Res (2007) 4.54

Gene regulation by microRNAs. Curr Opin Genet Dev (2006) 4.01

Molecular mechanisms of interferon resistance mediated by viral-directed inhibition of PKR, the interferon-induced protein kinase. Pharmacol Ther (1998) 3.64

Retracted Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript. Nature (2006) 3.47

miRNP:mRNA association in polyribosomes in a human neuronal cell line. RNA (2004) 3.39

Inhibition of HeLa cell protein synthesis during adenovirus infection. Restriction of cellular messenger RNA sequences to the nucleus. J Mol Biol (1979) 3.32

MicroRNAs: regulators of gene expression and cell differentiation. Blood (2006) 3.08

Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis. J Virol (2004) 2.77

Suppression of RNA interference by adenovirus virus-associated RNA. J Virol (2005) 2.29

Detection of adenoviruses in stools from healthy persons and patients with diarrhea by two-step polymerase chain reaction. J Med Virol (1992) 2.16

Small RNA asymmetry in RNAi: function in RISC assembly and gene regulation. FEBS Lett (2005) 1.74

Cellular mRNA translation is blocked at both initiation and elongation after infection by influenza virus or adenovirus. J Virol (1986) 1.59

MicroRNAs: expression, avoidance and subversion by vertebrate viruses. Nat Rev Microbiol (2006) 1.54

Adenovirus virus-associated RNA is processed to functional interfering RNAs involved in virus production. J Virol (2006) 1.53

A novel adenovirus-2 E1A mRNA encoding a protein with transcription activation properties. EMBO J (1987) 1.47

Adenovirus mutants with DNA sequence perturbations in the intragenic promoter of VAI RNA gene allow the enhanced transcription of VAII RNA gene in HeLa cells. Nucleic Acids Res (1984) 1.43

Sequence-specific interference by small RNAs derived from adenovirus VAI RNA. FEBS Lett (2006) 1.31

Immune evasion by adenoviruses. Immunol Rev (1999) 1.29

Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach. J Virol (1996) 1.25

Structure, function, and evolution of adenovirus virus-associated RNAs. Curr Top Microbiol Immunol (1995) 1.12

Preferential translation of adenovirus mRNAs in infected cells. Cold Spring Harb Symp Quant Biol (2001) 0.93

Cellular splicing and transcription regulatory protein p32 represses adenovirus major late transcription and causes hyperphosphorylation of RNA polymerase II. J Virol (2006) 0.83

Articles by these authors

Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol (2006) 3.30

Suppression of RNA interference by adenovirus virus-associated RNA. J Virol (2005) 2.29

Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups. PLoS One (2012) 2.25

A Populus EST resource for plant functional genomics. Proc Natl Acad Sci U S A (2004) 2.04

Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J (2006) 1.91

Clostridium botulinum group III: a group with dual identity shaped by plasmids, phages and mobile elements. BMC Genomics (2011) 1.34

Glucose-induced cyclic AMP oscillations regulate pulsatile insulin secretion. Cell Metab (2008) 1.33

Human splicing factor ASF/SF2 encodes for a repressor domain required for its inhibitory activity on pre-mRNA splicing. J Biol Chem (2002) 1.22

A genomic approach to investigate developmental cell death in woody tissues of Populus trees. Genome Biol (2005) 1.16

L4-33K, an adenovirus-encoded alternative RNA splicing factor. J Biol Chem (2006) 1.04

Involvement of the catalytic subunit of protein kinase A and of HA95 in pre-mRNA splicing. Exp Cell Res (2007) 1.03

A multiplex real-time PCR for identifying and differentiating B. anthracis virulent types. Int J Food Microbiol (2010) 0.99

Horizontal gene transfer of toxin genes in Clostridium botulinum: Involvement of mobile elements and plasmids. Mob Genet Elements (2011) 0.93

Accidental and deliberate microbiological contamination in the feed and food chains--how biotraceability may improve the response to bioterrorism. Int J Food Microbiol (2010) 0.90

Chemically regulated expression systems and their applications in transgenic plants. Transgenic Res (2003) 0.89

Management of animal botulism outbreaks: from clinical suspicion to practical countermeasures to prevent or minimize outbreaks. Biosecur Bioterror (2013) 0.88

Adenovirus L4-22K stimulates major late transcription by a mechanism requiring the intragenic late-specific transcription factor-binding site. Virus Res (2010) 0.88

The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells. Nucleic Acids Res (2013) 0.87

The Schistosoma mansoni protein Sm16/SmSLP/SmSPO-1 is a membrane-binding protein that lacks the proposed microtubule-regulatory activity. Mol Biochem Parasitol (2007) 0.87

Glucolipotoxicity in INS-1E cells is counteracted by carnitine palmitoyltransferase 1 over-expression. Biochem Biophys Res Commun (2008) 0.87

Binary AdEasy vector systems designed for Tet-ON or Tet-OFF regulated control of transgene expression. Virus Res (2005) 0.87

Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer. BMC Genomics (2011) 0.87

Substrate-dependent differences in U2AF requirement for splicing in adenovirus-infected cell extracts. J Biol Chem (2005) 0.85

Antibody-dependent natural killer cell-mediated cytotoxicity engendered by a kinase-inactive human HER2 adenovirus-based vaccination mediates resistance to breast tumors. Cancer Res (2010) 0.85

Evaluation of Bacillus strains as model systems for the work on Bacillus anthracis spores. Int J Food Microbiol (2010) 0.84

Cellular splicing and transcription regulatory protein p32 represses adenovirus major late transcription and causes hyperphosphorylation of RNA polymerase II. J Virol (2006) 0.83

The 5'-end heterogeneity of adenovirus virus-associated RNAI contributes to the asymmetric guide strand incorporation into the RNA-induced silencing complex. Nucleic Acids Res (2009) 0.83

Adenovirus 2 E1B-55K protein relieves p53-mediated transcriptional repression of the survivin and MAP4 promoters. FEBS Lett (2003) 0.82

Towards an international standard for detection and typing botulinum neurotoxin-producing Clostridia types A, B, E and F in food, feed and environmental samples: a European ring trial study to evaluate a real-time PCR assay. Int J Food Microbiol (2011) 0.82

Adenovirus E4orf4 induces HPV-16 late L1 mRNA production. Virology (2008) 0.82

The second RNA-binding domain of the human splicing factor ASF/SF2 is the critical domain controlling adenovirus E1A alternative 5'-splice site selection. Biochem J (2004) 0.82

Single molecule analysis of combinatorial splicing. Nucleic Acids Res (2010) 0.81

Two cellular protein kinases, DNA-PK and PKA, phosphorylate the adenoviral L4-33K protein and have opposite effects on L1 alternative RNA splicing. PLoS One (2012) 0.80

Serine 192 in the tiny RS repeat of the adenoviral L4-33K splicing enhancer protein is essential for function and reorganization of the protein to the periphery of viral replication centers. Virology (2012) 0.80

Characterization of RISC-associated adenoviral small RNAs. Methods Mol Biol (2011) 0.79

Genome-wide relatedness of Treponema pedis, from gingiva and necrotic skin lesions of pigs, with the human oral pathogen Treponema denticola. PLoS One (2013) 0.79

Adenoviral-mediated transduction of human pancreatic islets: importance of adenoviral genome for cell viability and association with a deficient antiviral response. Endocrinology (2005) 0.79

Molecular dissection of GTP exchange and hydrolysis within the ternary complex of tubulin heterodimers and Op18/stathmin family members. J Biol Chem (2003) 0.79

Unscheduled expression of capsid protein IIIa results in defects in adenovirus major late mRNA and protein expression. Virus Res (2002) 0.78

Protein kinase a-dependent phosphorylation of serine 119 in the proto-oncogenic serine/arginine-rich splicing factor 1 modulates its activity as a splicing enhancer protein. Genes Cancer (2011) 0.78

Multiplex real-time PCR for detecting and typing Clostridium botulinum group III organisms and their mosaic variants. Biosecur Bioterror (2013) 0.78

Preparation of soluble extracts from adenovirus-infected cells for studies of RNA splicing. Methods Mol Med (2007) 0.78

Hairy roots induced by Agrobacterium rhizogenes and production of regenerative plants in hairy root cultures in maize. Sci China C Life Sci (2006) 0.78

In vitro methods to study RNA interference during an adenovirus infection. Methods Mol Med (2007) 0.76

A mouse mammary epithelial cell line permissive for highly efficient human adenovirus growth. Virology (2012) 0.75

[Comparative study on photosynthetic characteristics of different ploidy Rhodiola sachalinensis germplasm]. Zhongguo Zhong Yao Za Zhi (2011) 0.75