Published in Curr Opin Plant Biol on September 19, 2007
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). Nat Protoc (2010) 1.85
Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proc Natl Acad Sci U S A (2008) 1.58
Transgenerational epigenetic inheritance in plants. Biochim Biophys Acta (2011) 1.58
MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing. EMBO J (2009) 1.25
The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants. Genes Dev (2009) 1.17
Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biol (2013) 1.15
Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor. PLoS Pathog (2010) 1.14
Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis. Plant Cell (2010) 1.04
HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings. Plant Cell (2013) 1.02
Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. Plant Cell (2011) 1.02
Sequence mining and transcript profiling to explore cyst nematode parasitism. BMC Genomics (2009) 1.00
Multiple layers of posttranslational regulation refine circadian clock activity in Arabidopsis. Plant Cell (2014) 0.99
Transcriptional regulation of Arabidopsis LEAFY COTYLEDON2 involves RLE, a cis-element that regulates trimethylation of histone H3 at lysine-27. Plant Cell (2011) 0.99
Arabidopsis Histone Lysine Methyltransferases. Adv Bot Res (2010) 0.98
Histone H3 Dynamics Reveal Domains with Distinct Proliferation Potential in the Arabidopsis Root. Plant Cell (2016) 0.97
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Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. Plant Physiol (2011) 0.95
Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses. Epigenetics (2008) 0.95
Ordered changes in histone modifications at the core of the Arabidopsis circadian clock. Proc Natl Acad Sci U S A (2012) 0.93
Genomic basis for light control of plant development. Protein Cell (2012) 0.91
Genome-wide analysis of histone modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica. Mol Plant (2013) 0.91
Dynamics of DNA methylation and Histone H4 acetylation during floral bud differentiation in azalea. BMC Plant Biol (2010) 0.90
The dynamics of histone H3 modifications is species-specific in plant meiosis. Planta (2013) 0.89
Developmental and environmental signals induce distinct histone acetylation profiles on distal and proximal promoter elements of the C4-Pepc gene in maize. Genetics (2008) 0.89
Molecular Functions of Long Non-Coding RNAs in Plants. Genes (Basel) (2012) 0.88
ANTI-SILENCING FUNCTION1 proteins are involved in ultraviolet-induced DNA damage repair and are cell cycle regulated by E2F transcription factors in Arabidopsis. Plant Physiol (2013) 0.86
Epigenetic profiling of heterochromatic satellite DNA. Chromosoma (2011) 0.85
New clues in the nucleus: transcriptional reprogramming in effector-triggered immunity. Front Plant Sci (2013) 0.85
Unstable RNAi effects through epigenetic silencing of an inverted repeat transgene in Chlamydomonas reinhardtii. Genetics (2008) 0.84
Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms. Plant Cell Physiol (2012) 0.84
Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum). PLoS One (2016) 0.83
DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana. Front Plant Sci (2013) 0.83
Histone modifications do not play a major role in salicylate-mediated suppression of jasmonate-induced PDF1.2 gene expression. Commun Integr Biol (2008) 0.82
Expression of vernalization responsive genes in wheat is associated with histone H3 trimethylation. Mol Genet Genomics (2012) 0.82
Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce. Planta (2016) 0.81
Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression. BMC Plant Biol (2012) 0.81
A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue. Nat Protoc (2014) 0.80
Regulation by polycomb and trithorax group proteins in Arabidopsis. Arabidopsis Book (2010) 0.80
Histone modifications associated with drought tolerance in the desert plant Zygophyllum dumosum Boiss. Planta (2009) 0.80
PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1. Plant Cell (2016) 0.79
The histone acetyltransferase GCN5 affects the inflorescence meristem and stamen development in Arabidopsis. Planta (2009) 0.78
Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. J Exp Bot (2017) 0.78
In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana. BMC Bioinformatics (2009) 0.78
Endometriosis is characterized by a distinct pattern of histone 3 and histone 4 lysine modifications. Reprod Sci (2013) 0.77
P1 Epigenetic Regulation in Leaves of High Altitude Maize Landraces: Effect of UV-B Radiation. Front Plant Sci (2016) 0.77
JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators. BMC Plant Biol (2015) 0.76
Circadian expression profiles of chromatin remodeling factor genes in Arabidopsis. J Plant Res (2014) 0.76
Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem. BMC Plant Biol (2015) 0.76
Variation of metabolic profiles in developing maize kernels up- and down-regulated for the hda101 gene. J Exp Bot (2008) 0.75
Knockdown of WHIRLY1 Affects Drought Stress-Induced Leaf Senescence and Histone Modifications of the Senescence-Associated Gene HvS40. Plants (Basel) (2016) 0.75
Heritable Effect of Plant Water Availability Conditions on Restoration of Male Fertility in the "9E" CMS-Inducing Cytoplasm of Sorghum. Front Plant Sci (2012) 0.75
The Histone Deacetylase Complex 1 Protein of Arabidopsis Has the Capacity to Interact with Multiple Proteins Including Histone 3-Binding Proteins and Histone 1 Variants. Plant Physiol (2016) 0.75
Structural disorder in plant proteins: where plasticity meets sessility. Cell Mol Life Sci (2017) 0.75
High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74
Chromatin modifications and their function. Cell (2007) 55.98
The role of chromatin during transcription. Cell (2007) 26.48
A chromatin landmark and transcription initiation at most promoters in human cells. Cell (2007) 23.41
The mammalian epigenome. Cell (2007) 18.13
The complex language of chromatin regulation during transcription. Nature (2007) 16.97
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci (2006) 13.32
Genome regulation by polycomb and trithorax proteins. Cell (2007) 11.96
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet (2006) 11.88
Polycomb silencing mechanisms and the management of genomic programmes. Nat Rev Genet (2007) 7.61
Epigenetic inheritance in plants. Nature (2007) 7.40
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature (2004) 5.87
Vernalization requires epigenetic silencing of FLC by histone methylation. Nature (2004) 5.77
DNA demethylation in the Arabidopsis genome. Proc Natl Acad Sci U S A (2007) 4.55
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol (2007) 4.30
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet (2007) 3.11
Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma (2004) 3.00
Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J (2006) 2.68
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell (2006) 2.46
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell (2005) 2.45
TOPLESS regulates apical embryonic fate in Arabidopsis. Science (2006) 2.34
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36. Nat Cell Biol (2005) 2.09
Chromosomal histone modification patterns--from conservation to diversity. Trends Plant Sci (2006) 2.09
HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell (2005) 2.06
Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J (2005) 2.04
Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep (2006) 2.02
The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell (2007) 1.99
Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance. Genes Dev (2006) 1.92
Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z. Plant Cell (2007) 1.91
Rules and regulation in the primary structure of chromatin. Curr Opin Cell Biol (2007) 1.86
Establishment of the vernalization-responsive, winter-annual habit in Arabidopsis requires a putative histone H3 methyl transferase. Plant Cell (2005) 1.82
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature (2007) 1.81
Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell (2006) 1.80
Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes. Plant Cell Physiol (2003) 1.77
Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time. Plant Cell (2004) 1.69
Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development. Genetics (2004) 1.59
Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis. Proc Natl Acad Sci U S A (2005) 1.59
Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochim Biophys Acta (2007) 1.58
Polycomb group and trithorax group proteins in Arabidopsis. Biochim Biophys Acta (2007) 1.57
Unwinding chromatin for development and growth: a few genes at a time. Trends Genet (2007) 1.57
A chromatin link that couples cell division to root epidermis patterning in Arabidopsis. Nature (2007) 1.56
APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower development. Development (2006) 1.54
Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development. Proc Natl Acad Sci U S A (2004) 1.52
Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. Nucleic Acids Res (2005) 1.48
Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis. Plant J (2006) 1.46
Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell (2004) 1.45
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. Plant Cell (2007) 1.45
Chromatin organization and cell fate switch respond to positional information in Arabidopsis. Nature (2005) 1.41
Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. Genes Dev (2006) 1.41
DNA methylation dynamics in plant genomes. Biochim Biophys Acta (2007) 1.41
SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis. EMBO J (2007) 1.37
Plant SET domain-containing proteins: structure, function and regulation. Biochim Biophys Acta (2007) 1.36
Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Plant Cell (2005) 1.33
Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis. Plant Cell (2007) 1.33
Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants. Biochim Biophys Acta (2007) 1.30
Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development. Development (2007) 1.28
The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription. Mol Cell Biol (2007) 1.26
The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin. Plant Cell Physiol (2005) 1.24
Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis. Plant Physiol (2007) 1.22
SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C. Plant Cell (2006) 1.20
Phosphorylation of histone H3 in plants--a dynamic affair. Biochim Biophys Acta (2007) 1.18
Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of FLOWERING LOCUS C in Arabidopsis. Plant Physiol (2007) 1.17
SEF, a new protein required for flowering repression in Arabidopsis, interacts with PIE1 and ARP6. Plant Physiol (2006) 1.16
Role of plant CBP/p300-like genes in the regulation of flowering time. Plant J (2006) 1.14
Epigenetic mechanisms governing seed development in plants. EMBO Rep (2006) 1.13
The Arabidopsis LHP1 protein is a component of euchromatin. Planta (2005) 1.13
SWI/SNF chromatin remodeling and linker histones in plants. Biochim Biophys Acta (2007) 1.06
SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis. Development (2006) 1.05
The bromodomain protein GTE6 controls leaf development in Arabidopsis by histone acetylation at ASYMMETRIC LEAVES1. Genes Dev (2005) 1.04
Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation. Trends Plant Sci (2007) 1.03
Molecular genetic studies of the memory of winter. J Exp Bot (2006) 1.00
The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9. Nucleic Acids Res (2006) 0.99
Chromatin modifiers that control plant development. Curr Opin Plant Biol (2005) 0.98
Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1. Biochim Biophys Acta (2006) 0.90
MGOUN3: evidence for chromatin-mediated regulation of FLC expression. J Exp Bot (2006) 0.86
Regulation and processing of maize histone deacetylase Hda1 by limited proteolysis. Plant Cell (2003) 0.82
The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1. Dev Cell (2009) 2.07
Unwinding chromatin for development and growth: a few genes at a time. Trends Genet (2007) 1.57
Genomic identification of direct target genes of LEAFY. Proc Natl Acad Sci U S A (2004) 1.55
LEAFY target genes reveal floral regulatory logic, cis motifs, and a link to biotic stimulus response. Dev Cell (2011) 1.53
WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis. Genes Dev (2005) 1.52
Effects of exercise training on myocardial energy metabolism and ventricular function assessed by quantitative phosphorus-31 magnetic resonance spectroscopy and magnetic resonance imaging in dilated cardiomyopathy. J Am Coll Cardiol (2008) 1.43
Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. Plant Cell (2007) 1.31
The chromatin remodeler SPLAYED regulates specific stress signaling pathways. PLoS Pathog (2008) 1.27
A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary. Development (2006) 1.25
Low 25-hydroxyvitamin D is associated with increased mortality in female nursing home residents. J Clin Endocrinol Metab (2012) 1.22
The LEAFY target LMI1 is a meristem identity regulator and acts together with LEAFY to regulate expression of CAULIFLOWER. Development (2006) 1.19
SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors. Proc Natl Acad Sci U S A (2012) 1.16
A molecular framework for auxin-mediated initiation of flower primordia. Dev Cell (2013) 1.15
The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis. Plant Cell (2012) 1.07
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev Cell (2013) 1.07
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell (2014) 1.01
Gibberellin acts positively then negatively to control onset of flower formation in Arabidopsis. Science (2014) 1.01
Effects of exercise training on left ventricular volumes and function in patients with nonischemic cardiomyopathy: application of magnetic resonance myocardial tagging. Am Heart J (2002) 1.00
Impact Total Psoas Volume on Short- and Long-Term Outcomes in Patients Undergoing Curative Resection for Pancreatic Adenocarcinoma: a New Tool to Assess Sarcopenia. J Gastrointest Surg (2015) 0.93
Effects of bisoprolol fumarate on left ventricular size, function, and exercise capacity in patients with heart failure: analysis with magnetic resonance myocardial tagging. Am Heart J (2002) 0.92
LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1. Development (2011) 0.92
Evaluation of indocyanine green clearance and model for end-stage liver disease for estimation of short-term prognosis in decompensated cirrhosis. Liver Int (2009) 0.85
The role of CYP3A5 genotypes in dose requirements of tacrolimus and everolimus after heart transplantation. Clin Transplant (2011) 0.84
The N-terminal ATPase AT-hook-containing region of the Arabidopsis chromatin-remodeling protein SPLAYED is sufficient for biological activity. Plant J (2006) 0.84
LEAFY controls Arabidopsis pedicel length and orientation by affecting adaxial-abaxial cell fate. Plant J (2011) 0.83
Solid organ transplantation: technical progress meets human dignity: a review of the literature considering elderly patients' health related quality of life following transplantation. Ageing Res Rev (2011) 0.83
Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects. Plant J (2012) 0.83
Effect of weathering product assemblages on Pb bioaccessibility in mine waste: implications for risk management. Environ Sci Pollut Res Int (2013) 0.81
The role of osteoprotegerin (OPG) receptor activator for nuclear factor kappaB ligand (RANKL) in cardiovascular pathology - a review. Wien Med Wochenschr (2011) 0.80
Mycosis as a cause of secondary sclerosing cholangitis requiring liver retransplantation. Transplantation (2011) 0.80
The stem cell--chromatin connection. Semin Cell Dev Biol (2009) 0.80
Circulating aldosterone and mortality in female nursing home residents. Exp Gerontol (2013) 0.78
RNA in situ hybridization in Arabidopsis. Methods Mol Biol (2012) 0.78
Serum cystatin C is an easy to obtain biomarker for the onset of renal impairment in heart transplant recipients. J Thorac Cardiovasc Surg (2010) 0.78
Glomerular filtration rate (GFR) determination via individual kinetics of the inulin-like polyfructosan sinistrin versus creatinine-based population-derived regression formulae. BMC Nephrol (2013) 0.77
Age of Transfused Blood Impacts Perioperative Outcomes Among Patients Who Undergo Major Gastrointestinal Surgery. Ann Surg (2016) 0.77
Identification of direct targets of plant transcription factors using the GR fusion technique. Methods Mol Biol (2015) 0.77
Sclerostin in institutionalized elderly women: associations with quantitative bone ultrasound, bone turnover, fractures, and mortality. J Am Geriatr Soc (2014) 0.76
The role of serum albumin in the prediction of malnutrition in patients at least five yr after heart transplantation. Clin Transplant (2014) 0.76
Estimating glomerular filtration rate. N Engl J Med (2012) 0.75
Vitamin D deficiency following Billroth II surgery - How much vitamin D is enough?: a case report. Cases J (2010) 0.75
Oesophageal metastases of hepatocellular carcinoma after liver transplantation. Transpl Int (2009) 0.75
The Effect of Mammalian Target of Rapamycin Versus Calcineurin Inhibitor-based Immunosuppression on Measured Versus Estimated Glomerular Filtration Rate After Orthotopic Liver Transplantation. Transplantation (2015) 0.75
Osteoporosis, weight gain and atypical fat accumulations - a typical feature not only for Cushing's, but also Madelung's disease: A case report. Wien Klin Wochenschr (2011) 0.75
Measurement of cardiac output and pulmonary transit time for assessment of pulmonary vascular resistance in domestic piglets. Exp Physiol (2009) 0.75
The role of CYP2C8 genotypes in dose requirement and levels of everolimus after heart transplantation. Wien Klin Wochenschr (2013) 0.75
Effectiveness of porcine dermal collagen in giant hernia closure in patients with deleterious fascia constitution after orthotopic liver transplantation. Transpl Int (2014) 0.75
Transcriptional target prediction using qualitative reasoning. Conf Proc IEEE Eng Med Biol Soc (2006) 0.75
Age of Transfused Blood Impacts Perioperative Outcomes Among Patients Who Undergo Major Gastrointestinal Surgery. Ann Surg (2017) 0.75
Eighty years old and 10 years after liver transplantation. J Am Geriatr Soc (2009) 0.75
Management of complications after varicoportal anastomosis in liver transplantation. Wien Klin Wochenschr (2011) 0.75