Published in Nature on June 07, 2007
The ubiquitin-26S proteasome system at the nexus of plant biology. Nat Rev Mol Cell Biol (2009) 3.81
Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet (2009) 3.66
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J (2011) 3.16
Regulation and function of DNA methylation in plants and animals. Cell Res (2011) 2.41
Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction. Nat Chem Biol (2011) 2.39
Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins. PLoS One (2010) 2.36
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Dev (2009) 2.00
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res (2008) 1.63
Histone H2B monoubiquitination in the chromatin of FLOWERING LOCUS C regulates flowering time in Arabidopsis. Plant Cell (2008) 1.54
HISTONE MONOUBIQUITINATION1 interacts with a subunit of the mediator complex and regulates defense against necrotrophic fungal pathogens in Arabidopsis. Plant Cell (2009) 1.52
Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS One (2007) 1.46
Histone modifications and dynamic regulation of genome accessibility in plants. Curr Opin Plant Biol (2007) 1.45
Abscisic acid-mediated epigenetic processes in plant development and stress responses. J Integr Plant Biol (2008) 1.44
Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Plant J (2009) 1.35
The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression. PLoS One (2012) 1.28
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Proc Natl Acad Sci U S A (2013) 1.27
The chromatin remodeler SPLAYED regulates specific stress signaling pathways. PLoS Pathog (2008) 1.27
Cooperation between EZH2, NSPc1-mediated histone H2A ubiquitination and Dnmt1 in HOX gene silencing. Nucleic Acids Res (2008) 1.24
RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci (2009) 1.14
Arabidopsis floral initiator SKB1 confers high salt tolerance by regulating transcription and pre-mRNA splicing through altering histone H4R3 and small nuclear ribonucleoprotein LSM4 methylation. Plant Cell (2011) 1.11
Characterizing the role of RNA silencing components in Cryptococcus neoformans. Fungal Genet Biol (2010) 1.09
Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis. Plant Physiol (2008) 1.08
The expanding universe of ubiquitin and ubiquitin-like modifiers. Plant Physiol (2012) 1.02
Dietary manipulation of histone structure and function. Annu Rev Nutr (2008) 1.02
Multiple layers of posttranslational regulation refine circadian clock activity in Arabidopsis. Plant Cell (2014) 0.99
Ubiquitin-specific protease16 modulates salt tolerance in Arabidopsis by regulating Na(+)/H(+) antiport activity and serine hydroxymethyltransferase stability. Plant Cell (2012) 0.98
The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Plant Physiol (2007) 0.96
Expression and clinical significance of UCH37 in human esophageal squamous cell carcinoma. Dig Dis Sci (2012) 0.96
The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. PLoS Genet (2011) 0.95
The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. Plant Cell (2011) 0.95
The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis. Plant Cell (2011) 0.95
DNA demethylation: a lesson from the garden. Chromosoma (2008) 0.95
Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid-ethylene antagonism mediated by histone deacetylation. Plant Cell (2013) 0.94
H2B- and H3-specific histone deacetylases are required for DNA methylation in Neurospora crassa. Genetics (2010) 0.93
Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression. Proc Natl Acad Sci U S A (2011) 0.92
Coordination between zinc and phosphate homeostasis involves the transcription factor PHR1, the phosphate exporter PHO1, and its homologue PHO1;H3 in Arabidopsis. J Exp Bot (2014) 0.92
Computational identification of miRNAs and their target genes from expressed sequence tags of tea (Camellia sinensis). Genomics Proteomics Bioinformatics (2010) 0.91
Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000. Plant Cell (2015) 0.90
Ubiquitin-specific proteases UBP12 and UBP13 act in circadian clock and photoperiodic flowering regulation in Arabidopsis. Plant Physiol (2013) 0.86
UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis. Genetics (2008) 0.85
Histone H2B ubiquitylation is not required for histone H3 methylation at lysine 4 in tetrahymena. J Biol Chem (2009) 0.85
Seed dormancy cycling in Arabidopsis: chromatin remodelling and regulation of DOG1 in response to seasonal environmental signals. Plant J (2014) 0.83
The epigenetics of adult (somatic) stem cells. Crit Rev Eukaryot Gene Expr (2008) 0.83
DNA methylation and demethylation in Arabidopsis. Arabidopsis Book (2008) 0.82
Polymorphic homoeolog of key gene of RdDM pathway, ARGONAUTE4_9 class is associated with pre-harvest sprouting in wheat (Triticum aestivum L.). PLoS One (2013) 0.81
Folate polyglutamylation is involved in chromatin silencing by maintaining global DNA methylation and histone H3K9 dimethylation in Arabidopsis. Plant Cell (2013) 0.81
RNA-directed DNA methylation in plants. Plant Cell Rep (2015) 0.80
Regulation by polycomb and trithorax group proteins in Arabidopsis. Arabidopsis Book (2010) 0.80
Genome-wide view of natural antisense transcripts in Arabidopsis thaliana. DNA Res (2015) 0.79
SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proc Natl Acad Sci U S A (2014) 0.79
Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice. Plant Physiol (2015) 0.78
Regulation of ABI5 turnover by reversible post-translational modifications. Plant Signal Behav (2014) 0.78
It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana. Plant Cell (2016) 0.77
siRNA-directed DNA Methylation in Plants. Curr Genomics (2015) 0.77
Purification of histone ubiquitin ligases from HeLa cells. Methods (2011) 0.77
Tomato histone H2B monoubiquitination enzymes SlHUB1 and SlHUB2 contribute to disease resistance against Botrytis cinerea through modulating the balance between SA- and JA/ET-mediated signaling pathways. BMC Plant Biol (2015) 0.77
Biochemical analysis of 'kerosene tree' Hymenaea courbaril L. under heat stress. Plant Signal Behav (2014) 0.76
Conservation and developmental expression of ubiquitin isopeptidases in Schistosoma mansoni. Mem Inst Oswaldo Cruz (2013) 0.76
Variation in genomic methylation in natural populations of chinese white poplar. PLoS One (2013) 0.76
The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure. Biochemistry (2014) 0.76
Chemical probes in plant epigenetics studies. Plant Signal Behav (2013) 0.75
UBIQUITIN-SPECIFIC PROTEASE14 Interacts with ULTRAVIOLET-B INSENSITIVE4 to Regulate Endoreduplication and Cell and Organ Growth in Arabidopsis. Plant Cell (2016) 0.75
The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation. Plant Physiol (2016) 0.75
UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses. Plant Mol Biol (2017) 0.75
The Deubiquitinating Enzymes UBP12 and UBP13 Positively Regulate MYC2 Levels in Jasmonate Responses. Plant Cell (2017) 0.75
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science (2011) 13.16
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell (2004) 9.18
PLANT CELLULAR AND MOLECULAR RESPONSES TO HIGH SALINITY. Annu Rev Plant Physiol Plant Mol Biol (2000) 8.61
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell (2005) 7.58
Criteria for annotation of plant MicroRNAs. Plant Cell (2008) 7.49
Cell signaling during cold, drought, and salt stress. Plant Cell (2002) 6.67
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proc Natl Acad Sci U S A (2011) 6.12
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev (2003) 4.99
A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol (2005) 4.62
In vitro reconstitution of an abscisic acid signalling pathway. Nature (2009) 4.18
Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication. Science (2007) 4.12
The putative plasma membrane Na(+)/H(+) antiporter SOS1 controls long-distance Na(+) transport in plants. Plant Cell (2002) 4.07
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell (2006) 4.06
Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. Plant J (2006) 4.05
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci (2007) 4.03
The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol (2003) 3.96
Acetylation in histone H3 globular domain regulates gene expression in yeast. Cell (2005) 3.82
Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3. Proc Natl Acad Sci U S A (2002) 3.79
Cloning and characterization of microRNAs from rice. Plant Cell (2005) 3.72
Cold stress regulation of gene expression in plants. Trends Plant Sci (2007) 3.72
Structural basis for sequence-specific recognition of DNA by TAL effectors. Science (2012) 3.64
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature (2009) 3.63
Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell (2007) 3.62
A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci U S A (2006) 3.48
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol (2008) 3.43
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses. Proc Natl Acad Sci U S A (2005) 3.41
The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis. Curr Biol (2007) 3.33
Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J Exp Bot (2003) 3.28
Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana. Nat Biotechnol (2002) 3.18
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell (2008) 3.14
Leaders in social networks, the Delicious case. PLoS One (2011) 3.10
Selective inhibition of Ezh2 by a small molecule inhibitor blocks tumor cells proliferation. Proc Natl Acad Sci U S A (2012) 3.03
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol (2007) 3.02
Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress. Proc Natl Acad Sci U S A (2009) 3.01
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta (2011) 2.84
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell (2005) 2.76
Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast. Genes Dev (2006) 2.73
Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol (2004) 2.71
Reconstitution in yeast of the Arabidopsis SOS signaling pathway for Na+ homeostasis. Proc Natl Acad Sci U S A (2002) 2.59
Efficient genome editing in plants using a CRISPR/Cas system. Cell Res (2013) 2.57
SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis. Plant Cell (2007) 2.54
Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases. Science (2011) 2.52
The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proc Natl Acad Sci U S A (2006) 2.50
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc Natl Acad Sci U S A (2006) 2.46
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell (2005) 2.45
Adenovirus small e1a alters global patterns of histone modification. Science (2008) 2.43
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell (2008) 2.43
Regulation of abscisic acid biosynthesis. Plant Physiol (2003) 2.41
Regulation and function of DNA methylation in plants and animals. Cell Res (2011) 2.41
Sir2 deacetylates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast. Mol Cell (2007) 2.38
The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion. Plant Cell (2003) 2.37
The genome of the extremophile crucifer Thellungiella parvula. Nat Genet (2011) 2.33
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation. Plant Cell (2008) 2.33
Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1. Mol Cell (2005) 2.32
Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc Natl Acad Sci U S A (2014) 2.26
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J Biol Chem (2006) 2.25
Identification and characterization of endogenous small interfering RNAs from rice. Nucleic Acids Res (2005) 2.18
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell (2009) 2.16
A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2. Proc Natl Acad Sci U S A (2003) 2.14
Salicylic acid-mediated innate immunity in Arabidopsis is regulated by SIZ1 SUMO E3 ligase. Plant J (2006) 2.13
RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance. Proc Natl Acad Sci U S A (2002) 2.08
A probabilistic method for small RNA flowgram matching. Pac Symp Biocomput (2008) 2.03
LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase. EMBO J (2002) 2.01
A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell (2004) 2.01
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Dev (2009) 2.00
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol (2010) 1.99
βCaMKII in lateral habenula mediates core symptoms of depression. Science (2013) 1.96
From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol (2004) 1.95
Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiol (2008) 1.95
Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant Physiol (2004) 1.94
Elevated expression of CUEDC2 protein confers endocrine resistance in breast cancer. Nat Med (2011) 1.93
The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnol J (2014) 1.93
Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. Plant Cell (2007) 1.93
A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis. Dev Cell (2002) 1.92
Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics (2008) 1.92
Chemocyanin, a small basic protein from the lily stigma, induces pollen tube chemotropism. Proc Natl Acad Sci U S A (2003) 1.90
Differential expression and function of Arabidopsis thaliana NHX Na+/H+ antiporters in the salt stress response. Plant J (2002) 1.86
Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis. J Biol Chem (2002) 1.85
RNA-directed DNA methylation. Curr Opin Plant Biol (2011) 1.84
Identification and mechanism of ABA receptor antagonism. Nat Struct Mol Biol (2010) 1.83
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature (2010) 1.82
Regulation of vacuolar Na+/H+ exchange in Arabidopsis thaliana by the salt-overly-sensitive (SOS) pathway. J Biol Chem (2003) 1.82
Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett (2006) 1.81
The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress. Plant Cell (2003) 1.79