PubRank

Albin Sandelin

Author PubWeight™ 195.16‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
2 Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 2006 17.19
3 Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 2004 9.96
4 JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res 2009 9.42
5 JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res 2007 8.79
6 A promoter-level mammalian expression atlas. Nature 2014 6.25
7 JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Res 2013 6.12
8 The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet 2009 6.02
9 A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res 2006 4.32
10 Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res 2011 3.81
11 Hidden layers of human small RNAs. BMC Genomics 2008 3.31
12 Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nat Rev Genet 2012 2.92
13 A code for transcription initiation in mammalian genomes. Genome Res 2007 2.71
14 Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. Genome Res 2008 2.60
15 Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. Nat Struct Mol Biol 2013 2.11
16 Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 2015 1.91
17 Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters. Genome Biol 2006 1.87
18 Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol 2015 1.58
19 PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters. Nucleic Acids Res 2011 1.56
20 Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites. BMC Genomics 2011 1.52
21 Evolutionary turnover of mammalian transcription start sites. Genome Res 2006 1.51
22 Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. Nat Struct Mol Biol 2011 1.51
23 Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver. Mol Endocrinol 2007 1.50
24 The complexity of the mammalian transcriptome. J Physiol 2006 1.43
25 Dynamic usage of transcription start sites within core promoters. Genome Biol 2006 1.41
26 Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation. Blood 2014 1.36
27 The genome landscape of ERalpha- and ERbeta-binding DNA regions. Proc Natl Acad Sci U S A 2008 1.27
28 A global genomic transcriptional code associated with CNS-expressed genes. Exp Cell Res 2006 1.24
29 New histone supply regulates replication fork speed and PCNA unloading. J Cell Biol 2013 1.16
30 Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res 2013 1.12
31 Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters. Toxicol Sci 2009 1.09
32 Discovery of regulatory elements is improved by a discriminatory approach. PLoS Comput Biol 2009 1.04
33 Genomic and chromatin signals underlying transcription start-site selection. Trends Genet 2011 1.04
34 Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket. J Biol Chem 2012 1.01
35 GMD: measuring the distance between histograms with applications on high-throughput sequencing reads. Bioinformatics 2012 0.99
36 Systematic clustering of transcription start site landscapes. PLoS One 2011 0.95
37 Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data. BMC Genomics 2011 0.95
38 Acute genome-wide effects of rosiglitazone on PPARγ transcriptional networks in adipocytes. Mol Endocrinol 2013 0.93
39 Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 2008 0.90
40 Exploring hepatic hormone actions using a compilation of gene expression profiles. BMC Physiol 2005 0.90
41 3-methylcholanthrene induces differential recruitment of aryl hydrocarbon receptor to human promoters. Toxicol Sci 2010 0.89
42 Multivariate Hawkes process models of the occurrence of regulatory elements. BMC Bioinformatics 2010 0.85
43 Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencing. Methods Mol Biol 2013 0.82
44 Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury. BMC Genomics 2010 0.80
45 Cross-species ChIP-seq studies provide insights into regulatory strategies of PPARγ in adipocytes. Transcription 2012 0.78
46 Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus. Eur J Neurosci 2010 0.77
47 Corrigendum: Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes. Genes Dev 2016 0.75