PubRank

Anna Marie Pyle

Author PubWeight™ 102.91‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). RNA 2008 5.94
2 Crystal structure of a self-spliced group II intron. Science 2008 4.66
3 mda-5: An interferon-inducible putative RNA helicase with double-stranded RNA-dependent ATPase activity and melanoma growth-suppressive properties. Proc Natl Acad Sci U S A 2002 3.99
4 RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP. Nature 2006 3.67
5 Structural insights into RNA recognition by RIG-I. Cell 2011 3.25
6 The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding. EMBO J 2002 2.52
7 RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. Nucleic Acids Res 2003 2.42
8 Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase. Nature 2004 2.10
9 The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery. Nucleic Acids Res 2004 1.70
10 The serine protease domain of hepatitis C viral NS3 activates RNA helicase activity by promoting the binding of RNA substrate. J Biol Chem 2007 1.70
11 Backbone tracking by the SF2 helicase NPH-II. Nat Struct Mol Biol 2004 1.61
12 Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry. Chem Rev 2007 1.59
13 The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 2011 1.51
14 Hepatitis C viral NS3-4A protease activity is enhanced by the NS3 helicase. J Biol Chem 2008 1.50
15 Visualizing group II intron catalysis through the stages of splicing. Cell 2012 1.50
16 A DEAD protein that activates intron self-splicing without unwinding RNA. Mol Cell 2006 1.49
17 Discrete RNA libraries from pseudo-torsional space. J Mol Biol 2012 1.46
18 Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure. J Mol Biol 2007 1.45
19 A single active-site region for a group II intron. Nat Struct Mol Biol 2005 1.43
20 Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides. J Mol Biol 2006 1.39
21 Defining the functional determinants for RNA surveillance by RIG-I. EMBO Rep 2013 1.36
22 A structural analysis of the group II intron active site and implications for the spliceosome. RNA 2009 1.31
23 An obligate intermediate along the slow folding pathway of a group II intron ribozyme. Nucleic Acids Res 2005 1.30
24 Productive folding to the native state by a group II intron ribozyme. J Mol Biol 2002 1.26
25 Structural basis for exon recognition by a group II intron. Nat Struct Mol Biol 2008 1.24
26 RCrane: semi-automated RNA model building. Acta Crystallogr D Biol Crystallogr 2012 1.24
27 An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme. J Mol Biol 2003 1.24
28 Semiautomated model building for RNA crystallography using a directed rotameric approach. Proc Natl Acad Sci U S A 2010 1.21
29 Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif. Nat Struct Mol Biol 2004 1.19
30 Tertiary architecture of the Oceanobacillus iheyensis group II intron. RNA 2009 1.18
31 Robust translocation along a molecular monorail: the NS3 helicase from hepatitis C virus traverses unusually large disruptions in its track. J Mol Biol 2006 1.18
32 Establishing a mechanistic basis for the large kinetic steps of the NS3 helicase. J Biol Chem 2008 1.17
33 Single-molecule analysis of Mss116-mediated group II intron folding. Nature 2010 1.17
34 Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins. J Mol Biol 2011 1.17
35 Visualizing the determinants of viral RNA recognition by innate immune sensor RIG-I. Structure 2012 1.16
36 Domains 2 and 3 interact to form critical elements of the group II intron active site. J Mol Biol 2003 1.15
37 A folding control element for tertiary collapse of a group II intron ribozyme. Nat Struct Mol Biol 2006 1.14
38 Duplex RNA activated ATPases (DRAs): platforms for RNA sensing, signaling and processing. RNA Biol 2012 1.10
39 The pathway for DNA recognition and RNA integration by a group II intron retrotransposon. Mol Cell 2003 1.10
40 The NS4A protein of hepatitis C virus promotes RNA-coupled ATP hydrolysis by the NS3 helicase. J Virol 2009 1.10
41 Structural insights into RNA splicing. Curr Opin Struct Biol 2009 1.09
42 Linking the group II intron catalytic domains: tertiary contacts and structural features of domain 3. EMBO J 2005 1.08
43 A group II intron inserted into a bacterial heat-shock operon shows autocatalytic activity and unusual thermostability. Biochemistry 2003 1.07
44 The thermodynamic basis for viral RNA detection by the RIG-I innate immune sensor. J Biol Chem 2012 1.06
45 A kinetic intermediate that regulates proper folding of a group II intron RNA. J Mol Biol 2007 1.06
46 Group II intron folding under near-physiological conditions: collapsing to the near-native state. J Mol Biol 2006 1.04
47 Three essential and conserved regions of the group II intron are proximal to the 5'-splice site. RNA 2007 1.02
48 The receptor for branch-site docking within a group II intron active site. Mol Cell 2006 1.01
49 The acidic domain of hepatitis C virus NS4A contributes to RNA replication and virus particle assembly. J Virol 2010 1.00
50 Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions. Methods 2002 0.99
51 Protein-facilitated folding of group II intron ribozymes. J Mol Biol 2010 0.99
52 The GANC tetraloop: a novel motif in the group IIC intron structure. J Mol Biol 2008 0.97
53 Dual roles for the Mss116 cofactor during splicing of the ai5γ group II intron. Nucleic Acids Res 2010 0.93
54 A conserved element that stabilizes the group II intron active site. RNA 2008 0.92
55 Crystal structure of a group II intron in the pre-catalytic state. Nat Struct Mol Biol 2012 0.91
56 The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias. J Biol Chem 2010 0.90
57 Lanthanide ions as probes for metal ions in the structure and catalytic mechanism of ribozymes. Met Ions Biol Syst 2003 0.88
58 Double-stranded RNA-dependent ATPase DRH-3: insight into its role in RNAsilencing in Caenorhabditis elegans. J Biol Chem 2010 0.88
59 Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II. Nucleic Acids Res 2005 0.88
60 The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility. RNA 2009 0.87
61 Now on display: a gallery of group II intron structures at different stages of catalysis. Mob DNA 2013 0.85
62 The 2'-OH group at the group II intron terminus acts as a proton shuttle. Nat Chem Biol 2010 0.84
63 A new way to see RNA. Q Rev Biophys 2011 0.83
64 Predicted group II intron lineages E and F comprise catalytically active ribozymes. RNA 2013 0.82
65 Dicer-related helicase 3 forms an obligate dimer for recognizing 22G-RNA. Nucleic Acids Res 2014 0.81
66 The brace for a growing scaffold: Mss116 protein promotes RNA folding by stabilizing an early assembly intermediate. J Mol Biol 2012 0.81
67 Prediction of functional tertiary interactions and intermolecular interfaces from primary sequence data. J Exp Zool B Mol Dev Evol 2005 0.80
68 Visualizing the ai5γ group IIB intron. Nucleic Acids Res 2013 0.80
69 Principles of ion recognition in RNA: insights from the group II intron structures. RNA 2014 0.80
70 Tinkering with transcription factor proteins: the role of transcription factor adaptation in developmental evolution. Novartis Found Symp 2007 0.78
71 Solving nucleic acid structures by molecular replacement: examples from group II intron studies. Acta Crystallogr D Biol Crystallogr 2013 0.78
72 Molecular mechanics of RNA translocases. Methods Enzymol 2012 0.78
73 Protein-facilitated ribozyme folding and catalysis. Nucleic Acids Symp Ser (Oxf) 2008 0.77
74 The ever-growing complexity of nucleic acids: from small DNA and RNA motifs to large molecular assemblies and machines. Curr Opin Struct Biol 2011 0.76
75 Noncoding RNAs: A story of networks and long-distance relationships. J Mol Biol 2013 0.76
76 DNA repair: big engine finds small breaks. Nature 2004 0.75