Published in ISME J on May 01, 2007
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol Mol Biol Rev (2011) 2.97
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J (2011) 1.71
Widespread occurrence of nitrate storage and denitrification among Foraminifera and Gromiida. Proc Natl Acad Sci U S A (2009) 1.66
Global occurrence of archaeal amoA genes in terrestrial hot springs. Appl Environ Microbiol (2008) 1.65
Global declines in oceanic nitrification rates as a consequence of ocean acidification. Proc Natl Acad Sci U S A (2010) 1.47
Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. ISME J (2010) 1.33
Effect of lake trophic status and rooted macrophytes on community composition and abundance of ammonia-oxidizing prokaryotes in freshwater sediments. Appl Environ Microbiol (2009) 1.32
Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proc Natl Acad Sci U S A (2013) 1.23
Distribution and diversity of archaeal and bacterial ammonia oxidizers in salt marsh sediments. Appl Environ Microbiol (2009) 1.23
Diversity, abundance, and spatial distribution of sediment ammonia-oxidizing Betaproteobacteria in response to environmental gradients and coastal eutrophication in Jiaozhou Bay, China. Appl Environ Microbiol (2010) 1.21
Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Appl Environ Microbiol (2007) 1.20
Linking ultrastructure and function in four genera of anaerobic ammonium-oxidizing bacteria: cell plan, glycogen storage, and localization of cytochrome C proteins. J Bacteriol (2007) 1.18
Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China. Appl Environ Microbiol (2010) 1.16
Diversity of archaeal type IV pilin-like structures. Extremophiles (2009) 1.14
Spatial variability in nitrification rates and ammonia-oxidizing microbial communities in the agriculturally impacted Elkhorn Slough estuary, California. Appl Environ Microbiol (2010) 1.08
Denitrification likely catalyzed by endobionts in an allogromiid foraminifer. ISME J (2011) 1.06
Identification of missing genes and enzymes for autotrophic carbon fixation in crenarchaeota. J Bacteriol (2010) 1.05
Anaerobic ammonium-oxidizing bacteria: unique microorganisms with exceptional properties. Microbiol Mol Biol Rev (2012) 1.04
Functional ecology of an Antarctic Dry Valley. Proc Natl Acad Sci U S A (2013) 1.04
Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Appl Environ Microbiol (2012) 1.04
Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean. ISME J (2013) 1.01
Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes. Appl Environ Microbiol (2011) 0.99
Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J (2011) 0.98
Anammox Planctomycetes have a peptidoglycan cell wall. Nat Commun (2015) 0.97
Diversity and spatial distribution of hydrazine oxidoreductase (hzo) gene in the oxygen minimum zone off Costa Rica. PLoS One (2013) 0.97
Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat. Front Microbiol (2012) 0.97
Response of the abundance of key soil microbial nitrogen-cycling genes to multi-factorial global changes. PLoS One (2013) 0.96
Transitions in nirS-type denitrifier diversity, community composition, and biogeochemical activity along the Chesapeake Bay estuary. Front Microbiol (2013) 0.96
Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters. Microb Ecol (2011) 0.95
Macrofauna regulate heterotrophic bacterial carbon and nitrogen incorporation in low-oxygen sediments. ISME J (2012) 0.94
Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB). Microb Ecol (2010) 0.93
Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling. PLoS One (2010) 0.93
Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high-temperature petroleum reservoirs. Microb Ecol (2010) 0.93
Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses. Ecotoxicology (2011) 0.91
Responses of ammonia-oxidizing bacterial and archaeal populations to organic nitrogen amendments in low-nutrient groundwater. Appl Environ Microbiol (2010) 0.91
Microbial colonization of basaltic glasses in hydrothermal organic-rich sediments at Guaymas Basin. Front Microbiol (2013) 0.91
Nitrite Control over Dissimilatory Nitrate/Nitrite Reduction Pathways in Shewanella loihica Strain PV-4. Appl Environ Microbiol (2015) 0.91
Vertical distribution of ammonia-oxidizing archaea and bacteria in sediments of a eutrophic lake. Curr Microbiol (2013) 0.89
Effect of different ammonia concentrations on community succession of ammonia-oxidizing microorganisms in a simulated paddy soil column. PLoS One (2012) 0.89
Advances in methods for detection of anaerobic ammonium oxidizing (anammox) bacteria. Appl Microbiol Biotechnol (2011) 0.89
Spatial variations in archaeal lipids of surface water and core-top sediments in the South china sea and their implications for paleoclimate studies. Appl Environ Microbiol (2011) 0.89
Bioturbation determines the response of benthic ammonia-oxidizing microorganisms to ocean acidification. Philos Trans R Soc Lond B Biol Sci (2013) 0.89
Metagenomics and its connection to microbial community organization. F1000 Biol Rep (2012) 0.88
Archaeal amoA and ureC genes and their transcriptional activity in the Arctic Ocean. Sci Rep (2014) 0.87
Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates. Extremophiles (2012) 0.87
Bacteria, archaea, and crenarchaeota in the epilimnion and hypolimnion of a deep holo-oligomictic lake. Appl Environ Microbiol (2009) 0.87
Seasonal variation in the metatranscriptomes of a Thaumarchaeota population from SE USA coastal waters. ISME J (2013) 0.87
Potential for Nitrogen Fixation and Nitrification in the Granite-Hosted Subsurface at Henderson Mine, CO. Front Microbiol (2011) 0.87
Crenarchaeota and their role in the nitrogen cycle in a subsurface radioactive thermal spring in the Austrian Central Alps. Appl Environ Microbiol (2008) 0.86
Quantification of ammonia oxidation rates and the distribution of ammonia-oxidizing Archaea and Bacteria in marine sediment depth profiles from Catalina Island, California. Front Microbiol (2012) 0.86
Comparative analysis of 16S rRNA and amoA genes from archaea selected with organic and inorganic amendments in enrichment culture. Appl Environ Microbiol (2012) 0.86
Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China. Appl Microbiol Biotechnol (2012) 0.86
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria. Front Microbiol (2014) 0.85
Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers. PLoS One (2012) 0.85
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions. Front Microbiol (2015) 0.85
Effects of non-indigenous oysters on microbial diversity and ecosystem functioning. PLoS One (2012) 0.84
Distribution of ammonia-oxidizing archaea and bacteria in the surface sediments of Matsushima Bay in relation to environmental variables. Microbes Environ (2011) 0.84
Bacterial domination over archaea in ammonia oxidation in a monsoon-driven tropical estuary. Microb Ecol (2014) 0.84
Community structure of archaea from deep-sea sediments of the South China Sea. Microb Ecol (2010) 0.83
Rapid and dissimilar response of ammonia oxidizing archaea and bacteria to nitrogen and water amendment in two temperate forest soils. Microbiol Res (2011) 0.83
Bacterial and archaea community present in the Pine Barrens Forest of Long Island, NY: unusually high percentage of ammonia oxidizing bacteria. PLoS One (2011) 0.83
An analysis of thaumarchaeota populations from the northern gulf of Mexico. Front Microbiol (2013) 0.82
Significance of archaeal nitrification in hypoxic waters of the Baltic Sea. ISME J (2014) 0.82
Response of archaeal communities in the rhizosphere of maize and soybean to elevated atmospheric CO2 concentrations. PLoS One (2010) 0.82
Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments. ISME J (2014) 0.82
Impacts of organic and inorganic fertilizers on nitrification in a cold climate soil are linked to the bacterial ammonia oxidizer community. Microb Ecol (2011) 0.81
The influence of intense chemical pollution on the community composition, diversity and abundance of anammox bacteria in the Jiaojiang Estuary (China). PLoS One (2012) 0.81
Distribution and abundance of archaeal and bacterial ammonia oxidizers in the sediments of the Dongjiang River, a drinking water supply for Hong Kong. Microbes Environ (2013) 0.80
Intracellular Isotope Localization in Ammonia sp. (Foraminifera) of Oxygen-Depleted Environments: Results of Nitrate and Sulfate Labeling Experiments. Front Microbiol (2016) 0.80
Vertical distribution of Archaea and Bacteria in a meromictic lake as determined by fluorescent in situ hybridization. Curr Microbiol (2011) 0.79
Chemoautotrophic growth of ammonia-oxidizing Thaumarchaeota enriched from a pelagic redox gradient in the Baltic Sea. Front Microbiol (2015) 0.79
High abundances of potentially active ammonia-oxidizing bacteria and archaea in oligotrophic, high-altitude lakes of the Sierra Nevada, California, USA. PLoS One (2014) 0.78
Geographic specific coral-associated ammonia-oxidizing archaea in the northern Gulf of Eilat (Red Sea). Microb Ecol (2012) 0.78
Response of ammonia oxidizing bacteria and archaea to acute zinc stress and different moisture regimes in soil. Microb Ecol (2012) 0.78
Archaeal Communities in a Heterogeneous Hypersaline-Alkaline Soil. Archaea (2015) 0.77
Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium. ISME J (2016) 0.77
Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes. BMC Genomics (2013) 0.77
Anaerobic ammonium oxidation: from laboratory to full-scale application. Biomed Res Int (2013) 0.77
Diversity, abundance, and spatial distribution of ammonia-oxidizing β-proteobacteria in sediments from Changjiang Estuary and its adjacent area in East China Sea. Microb Ecol (2013) 0.77
Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior. FEMS Microbiol Ecol (2013) 0.76
Metagenomic Reconstruction of Key Anaerobic Digestion Pathways in Municipal Sludge and Industrial Wastewater Biogas-Producing Systems. Front Microbiol (2016) 0.75
Archaea Dominate the Ammonia-Oxidizing Community in Deep-Sea Sediments of the Eastern Indian Ocean-from the Equator to the Bay of Bengal. Front Microbiol (2017) 0.75
Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic. PLoS One (2015) 0.75
The Significance of Myriophyllum elatinoides for Swine Wastewater Treatment: Abundance and Community Structure of Ammonia-Oxidizing Microorganisms in Sediments. PLoS One (2015) 0.75
Nitrogen Metabolism Genes from Temperate Marine Sediments. Mar Biotechnol (NY) (2017) 0.75
Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming. MBio (2016) 0.75
Unexpected diversity and high abundance of putative nitric oxide dismutase (Nod) genes in contaminated aquifers and wastewater treatment systems. Appl Environ Microbiol (2016) 0.75
Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats. Front Microbiol (2016) 0.75
Archaea in Natural and Impacted Brazilian Environments. Archaea (2016) 0.75
Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy. Springerplus (2016) 0.75
Shifts in the pelagic ammonia-oxidizing microbial communities along the eutrophic estuary of Yong River in Ningbo City, China. Front Microbiol (2015) 0.75
Microbiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific Octocorals. Front Microbiol (2016) 0.75
Dynamics of autotrophic marine planktonic thaumarchaeota in the East China Sea. PLoS One (2013) 0.75
Nitrogen loss by anaerobic ammonium oxidation in unconfined aquifer soils. Sci Rep (2017) 0.75
Sulfide-Induced Dissimilatory Nitrate Reduction to Ammonium Supports Anammox in an Open-Water Unit Process Wetland. Appl Environ Microbiol (2017) 0.75
Habitat specialization along a wetland moisture gradient differs between ammonia-oxidizing and denitrifying microorganisms. Microb Ecol (2014) 0.75
The influence of land use on the abundance and diversity of ammonia oxidizers. Curr Microbiol (2014) 0.75
The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction. Stand Genomic Sci (2017) 0.75
Microbial Succession and Nitrogen Cycling in Cultured Biofilms as Affected by the Inorganic Nitrogen Availability. Microb Ecol (2016) 0.75
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci U S A (2005) 7.04
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature (2010) 4.06
Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc Natl Acad Sci U S A (2009) 3.11
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci U S A (2007) 2.82
Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J (2011) 2.40
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature (2008) 2.37
A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. Proc Natl Acad Sci U S A (2008) 2.23
Microbial nitrogen cycling processes in oxygen minimum zones. Ann Rev Mar Sci (2011) 2.14
Zero-valent sulphur is a key intermediate in marine methane oxidation. Nature (2012) 1.97
Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science (2012) 1.80
Doubling of marine dinitrogen-fixation rates based on direct measurements. Nature (2012) 1.79
Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity. Environ Microbiol (2007) 1.67
Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ Microbiol (2007) 1.67
Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. Environ Microbiol (2007) 1.65
Complex nitrogen cycling in the sponge Geodia barretti. Environ Microbiol (2009) 1.61
Carbon and nitrogen fluxes associated with the cyanobacterium Aphanizomenon sp. in the Baltic Sea. ISME J (2010) 1.55
Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses. ISME J (2011) 1.48
Nitrite oxidation in the Namibian oxygen minimum zone. ISME J (2011) 1.45
Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland). Environ Microbiol (2009) 1.45
The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. Environ Microbiol (2012) 1.44
A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol (2008) 1.42
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl Environ Microbiol (2007) 1.36
Detecting metabolic activities in single cells, with emphasis on nanoSIMS. FEMS Microbiol Rev (2011) 1.32
Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). Environ Microbiol (2006) 1.29
Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre. ISME J (2011) 1.27
Carbon, nitrogen and O(2) fluxes associated with the cyanobacterium Nodularia spumigena in the Baltic Sea. ISME J (2011) 1.25
Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico. Environ Microbiol (2007) 1.22
Oxygen sensitivity of anammox and coupled N-cycle processes in oxygen minimum zones. PLoS One (2011) 1.21
Physiology and phylogeny of green sulfur bacteria forming a monospecific phototrophic assemblage at a depth of 100 meters in the Black Sea. Appl Environ Microbiol (2005) 1.21
Look@NanoSIMS--a tool for the analysis of nanoSIMS data in environmental microbiology. Environ Microbiol (2012) 1.20
Oceanographic and biological effects of shoaling of the oxygen minimum zone. Ann Rev Mar Sci (2012) 1.18
Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. Proc Natl Acad Sci U S A (2006) 1.17
15N-labeling experiments to dissect the contributions of heterotrophic denitrification and anammox to nitrogen removal in the OMZ waters of the ocean. Methods Enzymol (2011) 1.14
Aerobic denitrification in permeable Wadden Sea sediments. ISME J (2009) 1.12
Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria. Appl Environ Microbiol (2004) 1.12
Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria. Environ Microbiol (2008) 1.11
Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy. PLoS One (2013) 1.05
Substantial (13) C/(12) C and D/H fractionation during anaerobic oxidation of methane by marine consortia enriched in vitro. Environ Microbiol Rep (2009) 1.03
GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms. Environ Microbiol (2010) 1.02
Aerobic and anaerobic methanotrophs in the Black Sea water column. Environ Microbiol (2006) 0.99
In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations. Syst Appl Microbiol (2013) 0.94
Polysulfides as intermediates in the oxidation of sulfide to sulfate by Beggiatoa spp. Appl Environ Microbiol (2013) 0.93
Sulfur isotopes track the global extent and dynamics of euxinia during Cretaceous Oceanic Anoxic Event 2. Proc Natl Acad Sci U S A (2013) 0.92
Mechanisms of transient nitric oxide and nitrous oxide production in a complex biofilm. ISME J (2009) 0.90
Nitrogen isotope effects induced by anammox bacteria. Proc Natl Acad Sci U S A (2013) 0.88
Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). Syst Appl Microbiol (2009) 0.86
Benthic nitrogen loss in the arabian sea off pakistan. Front Microbiol (2012) 0.85
Distribution of a consortium between unicellular algae and the N2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean. Environ Microbiol (2014) 0.85
Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments. Environ Microbiol (2014) 0.81
Epifluorescence, SEM, TEM and nanoSIMS image analysis of the cold phenotype of Clostridium psychrophilum at subzero temperatures. FEMS Microbiol Ecol (2014) 0.80
Inorganic carbon fixation by sulfate-reducing bacteria in the Black Sea water column. Environ Microbiol (2007) 0.79
Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf. Proc Natl Acad Sci U S A (2013) 0.79
Resolution of Conflicting Signals at the Single-Cell Level in the Regulation of Cyanobacterial Photosynthesis and Nitrogen Fixation. PLoS One (2013) 0.79
Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway). Environ Microbiol (2013) 0.78
Impact of temperature on ladderane lipid distribution in anammox bacteria. Appl Environ Microbiol (2010) 0.77