Published in Appl Environ Microbiol on March 20, 2009
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Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments. Appl Microbiol Biotechnol (2010) 1.22
Ecophysiological characterization of ammonia-oxidizing archaea and bacteria from freshwater. Appl Environ Microbiol (2012) 1.06
Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. Stand Genomic Sci (2013) 1.04
Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammonia-oxidizing archaea in simulated creek ecosystems. Appl Environ Microbiol (2011) 1.04
Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes. Appl Environ Microbiol (2011) 0.99
Aquarium nitrification revisited: Thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium biofilters. PLoS One (2011) 0.98
Abundance and diversity of ammonia-oxidizing archaea and bacteria in sediments of trophic end members of the Laurentian Great Lakes, Erie and Superior. PLoS One (2014) 0.92
Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils. ISME J (2014) 0.92
Vertical distribution of ammonia-oxidizing archaea and bacteria in sediments of a eutrophic lake. Curr Microbiol (2013) 0.89
Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures. Appl Environ Microbiol (2013) 0.89
Higher diversity of ammonia/ammonium-oxidizing prokaryotes in constructed freshwater wetland than natural coastal marine wetland. Appl Microbiol Biotechnol (2012) 0.88
Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove. Appl Microbiol Biotechnol (2012) 0.87
Spatial distribution and factors shaping the niche segregation of ammonia-oxidizing microorganisms in the Qiantang River, China. Appl Environ Microbiol (2013) 0.86
Shell biofilm nitrification and gut denitrification contribute to emission of nitrous oxide by the invasive freshwater mussel Dreissena polymorpha (zebra mussel). Appl Environ Microbiol (2012) 0.85
Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation. Appl Environ Microbiol (2011) 0.84
Abundance and composition of epiphytic bacterial and archaeal ammonia oxidizers of marine red and brown macroalgae. Appl Environ Microbiol (2011) 0.83
Phylogenetic diversity and ecological pattern of ammonia-oxidizing archaea in the surface sediments of the western Pacific. Microb Ecol (2011) 0.83
Microbial community analysis in the roots of aquatic plants and isolation of novel microbes including an organism of the candidate phylum OP10. Microbes Environ (2012) 0.82
amoA-encoding archaea and thaumarchaeol in the lakes on the northeastern Qinghai-Tibetan Plateau, China. Front Microbiol (2013) 0.82
Distribution and abundance of archaeal and bacterial ammonia oxidizers in the sediments of the Dongjiang River, a drinking water supply for Hong Kong. Microbes Environ (2013) 0.80
Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta. Front Microbiol (2015) 0.80
Community structure and in situ activity of nitrifying bacteria in Phragmites root-associated biofilms. Microbes Environ (2012) 0.79
Seasonal effects in a lake sediment archaeal community of the Brazilian Savanna. Archaea (2014) 0.79
Sediment Ammonia-Oxidizing Microorganisms in Two Plateau Freshwater Lakes at Different Trophic States. Microb Ecol (2015) 0.77
Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea. Appl Environ Microbiol (2012) 0.77
Chemolithotrophic nitrate-dependent Fe(II)-oxidizing nature of actinobacterial subdivision lineage TM3. ISME J (2013) 0.77
Niche specificity of ammonia-oxidizing archaeal and bacterial communities in a freshwater wetland receiving municipal wastewater in Daqing, Northeast China. Ecotoxicology (2014) 0.77
Sedimentary archaeal amoA gene abundance reflects historic nutrient level and salinity fluctuations in Qinghai Lake, Tibetan Plateau. Sci Rep (2015) 0.76
Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy. Springerplus (2016) 0.75
The effect of human settlement on the abundance and community structure of ammonia oxidizers in tropical stream sediments. Front Microbiol (2015) 0.75
Community Composition and Abundance of Anammox Bacteria in Cattail Rhizosphere Sediments at Three Phenological Stages. Curr Microbiol (2017) 0.75
Degradation of forchlorfenuron by nitrification and denitrification reactions in the gut and shell biofilm of Limnoperna fortunei. Ecotoxicology (2014) 0.75
Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments. Front Microbiol (2017) 0.75
Distribution patterns of ammonia-oxidizing bacteria and anammox bacteria in the freshwater marsh of Honghe wetland in Northeast China. Ecotoxicology (2014) 0.75
The effects of climate, catchment land use and local factors on the abundance and community structure of sediment ammonia-oxidizing microorganisms in Yangtze lakes. AMB Express (2017) 0.75
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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol (2001) 16.51
Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature (2005) 9.83
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Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature (2006) 9.25
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci U S A (2005) 7.04
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol (2006) 6.45
Nanogram nitrite and nitrate determination in environmental and biological materials by vanadium (III) reduction with chemiluminescence detection. Anal Chem (1989) 3.92
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Marine planktonic archaea take up amino acids. Appl Environ Microbiol (2000) 3.49
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol (2008) 3.34
Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl Environ Microbiol (2005) 3.13
New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J (2007) 2.98
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol (2008) 2.56
Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J Microbiol Methods (2002) 2.44
Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats. Appl Environ Microbiol (1996) 1.79
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J (2007) 1.73
Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ Microbiol (2008) 1.72
Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle? Trends Microbiol (2006) 1.69
Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria. Appl Environ Microbiol (2002) 1.61
Recovery of a Nitrosomonas-like 16S rDNA sequence group from freshwater habitats. Syst Appl Microbiol (1998) 1.48
Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora. Appl Environ Microbiol (2008) 1.35
Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl Environ Microbiol (2002) 1.23
Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiol Ecol (2007) 1.17
Cultivation of mesophilic soil crenarchaeotes in enrichment cultures from plant roots. Appl Environ Microbiol (2005) 1.13
Nested PCR detection of Archaea in defined compartments of pine mycorrhizospheres developed in boreal forest humus microcosms. FEMS Microbiol Ecol (2003) 1.01
Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in a high yield irrigated Philippine rice field. FEMS Microbiol Ecol (2004) 0.95
Microsensor Analysis of Oxygen in the Rhizosphere of the Aquatic Macrophyte Littorella uniflora (L.) Ascherson. Plant Physiol (1994) 0.86
Filamentous bacteria transport electrons over centimetre distances. Nature (2012) 3.38
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat. Appl Environ Microbiol (2003) 1.80
Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis. Appl Environ Microbiol (2005) 1.44
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun (2013) 1.40
The earthworm gut: an ideal habitat for ingested N2O-producing microorganisms. Appl Environ Microbiol (2003) 1.36
Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora. Appl Environ Microbiol (2008) 1.35
N2O-producing microorganisms in the gut of the earthworm Aporrectodea caliginosa are indicative of ingested soil bacteria. Appl Environ Microbiol (2003) 1.34
Nitrous oxide reductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar. Appl Environ Microbiol (2006) 1.24
Prokaryotic community structure and sulfate reducer activity in water from high-temperature oil reservoirs with and without nitrate treatment. Appl Environ Microbiol (2009) 1.21
In situ distribution and activity of nitrifying bacteria in freshwater sediment. Environ Microbiol (2003) 1.19
Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiol Ecol (2007) 1.17
Identification and comparison of aerobic and denitrifying polyphosphate-accumulating organisms. Biotechnol Bioeng (2003) 1.16
The bacteriology of chronic venous leg ulcer examined by culture-independent molecular methods. Wound Repair Regen (2010) 1.16
Defluviimonas denitrificans gen. nov., sp. nov., and Pararhodobacter aggregans gen. nov., sp. nov., non-phototrophic Rhodobacteraceae from the biofilter of a marine aquaculture. Syst Appl Microbiol (2011) 1.11
Tolerance and metabolic response of acetogenic bacteria toward oxygen. Appl Environ Microbiol (2002) 1.08
Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. Int J Syst Evol Microbiol (2005) 1.06
A review and update of the microbiology of enhanced biological phosphorus removal in wastewater treatment plants. Antonie Van Leeuwenhoek (2002) 1.06
Cable bacteria associated with long-distance electron transport in New England salt marsh sediment. Environ Microbiol Rep (2014) 0.95
Nitrous oxide emission by aquatic macrofauna. Proc Natl Acad Sci U S A (2009) 0.94
Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation. Microbiology (2003) 0.91
Diversity and host specificity of the Verminephrobacter-earthworm symbiosis. Environ Microbiol (2009) 0.89
Two types of endosymbiotic bacteria in the enigmatic marine worm Xenoturbella bocki. Appl Environ Microbiol (2010) 0.88
Two-component systems and regulation of developmental progression in Myxococcus xanthus. Methods Enzymol (2010) 0.87
Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms. Genome Biol Evol (2012) 0.86
Shell biofilm nitrification and gut denitrification contribute to emission of nitrous oxide by the invasive freshwater mussel Dreissena polymorpha (zebra mussel). Appl Environ Microbiol (2012) 0.85
Fluorescence in situ hybridization (FISH) detection of nitrite reductase transcripts (nirS mRNA) in Pseudomonas stutzeri biofilms relative to a microscale oxygen gradient. Syst Appl Microbiol (2012) 0.85
Anaerobic and aerobic metabolism of glycogen-accumulating organisms selected with propionate as the sole carbon source. Microbiology (2006) 0.84
Detection and persistence of fecal Bacteroidales as water quality indicators in unchlorinated drinking water. Syst Appl Microbiol (2009) 0.84
Competition between polyphosphate and glycogen accumulating organisms in enhanced biological phosphorus removal systems with acetate and propionate as carbon sources. J Biotechnol (2005) 0.83
Distribution and rate of microbial processes in an ammonia-loaded air filter biofilm. Appl Environ Microbiol (2009) 0.83
Geminicoccus roseus gen. nov., sp. nov., an aerobic phototrophic Alphaproteobacterium isolated from a marine aquaculture biofilter. Syst Appl Microbiol (2007) 0.83
Verminephrobacter aporrectodeae sp. nov. subsp. tuberculatae and subsp. caliginosae, the specific nephridial symbionts of the earthworms Aporrectodea tuberculata and A. caliginosa. Antonie Van Leeuwenhoek (2011) 0.82
Nitrogen transformations in stratified aquatic microbial ecosystems. Antonie Van Leeuwenhoek (2006) 0.82
In vitro production of necrotic enteritis toxin B, NetB, by netB-positive and netB-negative Clostridium perfringens originating from healthy and diseased broiler chickens. Vet Microbiol (2010) 0.82
Electrochemical DNA sandwich assay with a lipase label for attomole detection of DNA. Chem Commun (Camb) (2010) 0.82
Identification of bacteria potentially responsible for oxic and anoxic sulfide oxidation in biofilters of a recirculating mariculture system. Appl Environ Microbiol (2005) 0.82
Shell biofilm-associated nitrous oxide production in marine molluscs: processes, precursors and relative importance. Environ Microbiol (2012) 0.81
Beneficial effect of Verminephrobacter nephridial symbionts on the fitness of the earthworm Aporrectodea tuberculata. Appl Environ Microbiol (2010) 0.81
Lactovum miscens gen. nov., sp. nov., an aerotolerant, psychrotolerant, mixed-fermentative anaerobe from acidic forest soil. Res Microbiol (2004) 0.81
Dynamic microbial response of sulfidogenic wastewater biofilm to nitrate. Appl Microbiol Biotechnol (2011) 0.81
Community structure of bacteria and fungi in aerosols of a pig confinement building. FEMS Microbiol Ecol (2012) 0.81
Succession of Deferribacteres and Epsilonproteobacteria through a nitrate-treated high-temperature oil production facility. Syst Appl Microbiol (2012) 0.80
Correlation effects in wave function mapping of molecular beam epitaxy grown quantum dots. Nano Lett (2007) 0.80
Metabolic versatility in full-scale wastewater treatment plants performing enhanced biological phosphorus removal. Water Res (2013) 0.80
Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells. Environ Microbiol (2010) 0.80
Biofilm retention on surfaces with variable roughness and hydrophobicity. Biofouling (2011) 0.80
Temporal variation of nitrification rates in experimental freshwater sediments enriched with ammonia or nitrite. FEMS Microbiol Ecol (2003) 0.80
Greenhouse gas microbiology in wet and dry straw crust covering pig slurry. J Environ Qual (2009) 0.79
Oxygen distribution and potential ammonia oxidation in floating, liquid manure crusts. J Environ Qual (2010) 0.79
Filtration properties of activated sludge in municipal MBR wastewater treatment plants are related to microbial community structure. Water Res (2013) 0.79
Extracellular DNA in adhesion and biofilm formation of four environmental isolates: a quantitative study. FEMS Microbiol Ecol (2013) 0.79
Effect of nitrate on sulfur transformations in sulfidogenic sludge of a marine aquaculture biofilter. FEMS Microbiol Ecol (2010) 0.78
Bacterial community structure of a full-scale biofilter treating pig house exhaust air. Syst Appl Microbiol (2011) 0.77
Flow cytometry-assisted cloning of specific sequence motifs from complex 16S rRNA gene libraries. Appl Environ Microbiol (2004) 0.77
Re-appraisal of the phylogeny and fluorescence in situ hybridization probes for the analysis of the Competibacteraceae in wastewater treatment systems. Environ Microbiol Rep (2014) 0.76
Metagenomes obtained by 'deep sequencing' - what do they tell about the enhanced biological phosphorus removal communities? Water Sci Technol (2013) 0.76
Lateral Ordering of InAs Quantum Dots on Cross-hatch Patterned GaInP. Nanoscale Res Lett (2010) 0.75
The influence of temperature on the photoluminescence properties of single InAs quantum dots grown on patterned GaAs. Nanoscale Res Lett (2012) 0.75
Seasonal methane oxidation potential in manure crusts. Appl Environ Microbiol (2012) 0.75
Dynamics of plc gene transcription and alpha-toxin production during growth of Clostridium perfringens strains with contrasting alpha-toxin production. Vet Microbiol (2009) 0.75
Stacked GaAs quantum dots fabricated by refilling of self-organized nanoholes: optical properties and post-growth annealing. Nanotechnology (2011) 0.75
Nitrifying community analysis in a single submerged attached-growth bioreactor for treatment of high-ammonia waste stream. Water Environ Res (2007) 0.75
Sequence variation in the alpha-toxin encoding plc gene of Clostridium perfringens strains isolated from diseased and healthy chickens. Vet Microbiol (2008) 0.75
Electrochemical sandwich assay for attomole analysis of DNA and RNA from beer spoilage bacteria Lactobacillus brevis. Biosens Bioelectron (2012) 0.75
Higher nitrate-reducer diversity in macrophyte-colonized compared to unvegetated freshwater sediment. Syst Appl Microbiol (2012) 0.75