Published in Biochemistry on January 16, 2008
Probing protein structure by amino acid-specific covalent labeling and mass spectrometry. Mass Spectrom Rev (2009) 1.86
Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting. Proc Natl Acad Sci U S A (2009) 1.53
H/D exchange and mass spectrometry in the studies of protein conformation and dynamics: is there a need for a top-down approach? Anal Chem (2009) 1.30
DNA-protein cross-linking by 1,2,3,4-diepoxybutane. J Proteome Res (2010) 1.17
Direct binding of glyceraldehyde 3-phosphate dehydrogenase to telomeric DNA protects telomeres against chemotherapy-induced rapid degradation. J Mol Biol (2009) 1.01
Fast photochemical oxidation of proteins for comparing structures of protein-ligand complexes: the calmodulin-peptide model system. Anal Chem (2010) 1.01
Mass spectrometry-based carboxyl footprinting of proteins: method evaluation. Int J Mass Spectrom (2012) 0.91
Carboxyl-group footprinting maps the dimerization interface and phosphorylation-induced conformational changes of a membrane-associated tyrosine kinase. Mol Cell Proteomics (2011) 0.91
Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase. Nucleic Acids Res (2012) 0.90
Improved mass spectrometric characterization of protein glycosylation reveals unusual glycosylation of maize-derived bovine trypsin. Anal Chem (2010) 0.90
Emerging mass spectrometry-based approaches to probe protein-receptor interactions: focus on overcoming physiological barriers. Adv Drug Deliv Rev (2013) 0.84
Comparison of Two ESI MS Based H/D Exchange Methods for Extracting Protein Folding Energies. Int J Mass Spectrom (2009) 0.82
Protein-peptide affinity determination using an h/d exchange dilution strategy: application to antigen-antibody interactions. J Am Soc Mass Spectrom (2010) 0.81
Isotope-Encoded Carboxyl Group Footprinting for Mass Spectrometry-Based Protein Conformational Studies. J Am Soc Mass Spectrom (2015) 0.80
HD exchange and PLIMSTEX determine the affinities and order of binding of Ca2+ with troponin C. Biochemistry (2011) 0.79
Mapping the protein-protein interface between a toxin and its cognate antitoxin from the bacterial pathogen Streptococcus pyogenes. Biochemistry (2011) 0.78
Strong anion exchange for studying protein-DNA interactions by H/D exchange mass spectrometry. J Am Soc Mass Spectrom (2008) 0.77
Predicting protein-DNA interactions by full search computational docking. Proteins (2013) 0.77
Theory of the Protein Equilibrium Population Snapshot by H/D Exchange Electrospray Ionization Mass Spectrometry (PEPS-HDX-ESI-MS) Method used to obtain Protein Folding Energies/Rates and Selected Supporting Experimental Evidence. Int J Mass Spectrom (2012) 0.76
Alloreactive T cells respond specifically to multiple distinct peptide-MHC complexes. Nat Immunol (2007) 2.61
Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale. J Am Soc Mass Spectrom (2005) 2.28
Comparing similar spectra: from similarity index to spectral contrast angle. J Am Soc Mass Spectrom (2002) 1.78
An endogenous peptide positively selects and augments the activation and survival of peripheral CD4+ T cells. Nat Immunol (2009) 1.78
Fast photochemical oxidation of protein footprints faster than protein unfolding. Anal Chem (2009) 1.69
Metabolism and DNA binding studies of 4-hydroxyestradiol and estradiol-3,4-quinone in vitro and in female ACI rat mammary gland in vivo. Carcinogenesis (2003) 1.65
Natural peptides selected by diabetogenic DQ8 and murine I-A(g7) molecules show common sequence specificity. J Clin Invest (2005) 1.60
Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting. Proc Natl Acad Sci U S A (2009) 1.53
Top-down mass spectrometry: recent developments, applications and perspectives. Analyst (2011) 1.50
A triterpene glycoside from black cohosh that inhibits osteoclastogenesis by modulating RANKL and TNFalpha signaling pathways. Chem Biol (2007) 1.44
Intrinsic nucleic acid-binding activity of Chp1 chromodomain is required for heterochromatic gene silencing. Mol Cell (2012) 1.42
Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase zeta and REV1. J Biol Chem (2010) 1.40
Phycobilisomes supply excitations to both photosystems in a megacomplex in cyanobacteria. Science (2013) 1.37
Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities. Protein Sci (2005) 1.36
In APCs, the autologous peptides selected by the diabetogenic I-Ag7 molecule are unique and determined by the amino acid changes in the P9 pocket. J Immunol (2002) 1.32
Quantification of diacylglycerol molecular species in biological samples by electrospray ionization mass spectrometry after one-step derivatization. Anal Chem (2007) 1.26
Native electrospray and electron-capture dissociation FTICR mass spectrometry for top-down studies of protein assemblies. Anal Chem (2011) 1.25
Quantification of protein-ligand interactions by mass spectrometry, titration, and H/D exchange: PLIMSTEX. J Am Chem Soc (2003) 1.23
Catechol ortho-quinones: the electrophilic compounds that form depurinating DNA adducts and could initiate cancer and other diseases. Carcinogenesis (2002) 1.19
An electrically compensated trap designed to eighth order for FT-ICR mass spectrometry. J Am Soc Mass Spectrom (2008) 1.19
Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH. EMBO J (2008) 1.17
A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations. J Am Chem Soc (2011) 1.15
Evaluation of different combinations of gated trapping, RF-only mode and trap compensation for in-field MALDI Fourier transform mass spectrometry. J Am Soc Mass Spectrom (2004) 1.14
Molecular mechanism of photoactivation and structural location of the cyanobacterial orange carotenoid protein. Biochemistry (2013) 1.13
Temperature jump and fast photochemical oxidation probe submillisecond protein folding. J Am Chem Soc (2010) 1.12
Interactions of apurinic/apyrimidinic endonuclease with a redox inhibitor: evidence for an alternate conformation of the enzyme. Biochemistry (2010) 1.10
Hydrogen/deuterium exchange and electron-transfer dissociation mass spectrometry determine the interface and dynamics of apolipoprotein E oligomerization. Biochemistry (2011) 1.09
G-quadruplex formation of thrombin-binding aptamer detected by electrospray ionization mass spectrometry. J Am Chem Soc (2003) 1.06
Native electrospray and electron-capture dissociation in FTICR mass spectrometry provide top-down sequencing of a protein component in an intact protein assembly. J Am Soc Mass Spectrom (2010) 1.06
Native mass spectrometry characterization of intact nanodisc lipoprotein complexes. Anal Chem (2012) 1.06
Genetic variants in Piwi-interacting RNA pathway genes confer susceptibility to spermatogenic failure in a Chinese population. Hum Reprod (2010) 1.05
Fast photochemical oxidation of proteins for epitope mapping. Anal Chem (2011) 1.04
Fast photochemical oxidation of proteins and mass spectrometry follow submillisecond protein folding at the amino-acid level. J Am Chem Soc (2012) 1.04
Functional analysis of novel analogues of E3330 that block the redox signaling activity of the multifunctional AP endonuclease/redox signaling enzyme APE1/Ref-1. Antioxid Redox Signal (2011) 1.03
Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications. J Biol Chem (2009) 1.03
Mass spectrometry-based protein footprinting characterizes the structures of oligomeric apolipoprotein E2, E3, and E4. Biochemistry (2011) 1.02
The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix. J Mol Biol (2005) 1.02
Structural polymorphism of chromodomains in Chd1. J Mol Biol (2006) 1.02
Fast photochemical oxidation of proteins for comparing structures of protein-ligand complexes: the calmodulin-peptide model system. Anal Chem (2010) 1.01
Sulfate radical anion as a new reagent for fast photochemical oxidation of proteins. Anal Chem (2010) 1.00
Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates. Proc Natl Acad Sci U S A (2011) 1.00
Probing Ca2+-induced conformational changes in porcine calmodulin by H/D exchange and ESI-MS: effect of cations and ionic strength. Biochemistry (2003) 1.00
The nature of the TRAP-Anti-TRAP complex. Proc Natl Acad Sci U S A (2009) 0.99
Combined charged residue-field emission model of macromolecular electrospray ionization. Anal Chem (2009) 0.99
Charge carrier field emission determines the number of charges on native state proteins in electrospray ionization. J Am Chem Soc (2008) 0.99
Fast photochemical oxidation of proteins (FPOP) maps the epitope of EGFR binding to adnectin. J Am Soc Mass Spectrom (2014) 0.98
Ankle syndesmosis injuries: anatomy, biomechanics, mechanism of injury, and clinical guidelines for diagnosis and intervention. J Orthop Sports Phys Ther (2006) 0.98
MS-based cross-linking analysis reveals the location of the PsbQ protein in cyanobacterial photosystem II. Proc Natl Acad Sci U S A (2014) 0.98
Crystal structures of penicillin-binding protein 3 (PBP3) from methicillin-resistant Staphylococcus aureus in the apo and cefotaxime-bound forms. J Mol Biol (2012) 0.98
Characterization of structural variations in the peptidoglycan of vancomycin-susceptible Enterococcus faecium: understanding glycopeptide-antibiotic binding sites using mass spectrometry. J Am Soc Mass Spectrom (2008) 0.98
Ionic-liquid matrices for improved analysis of phospholipids by MALDI-TOF mass spectrometry. J Am Soc Mass Spectrom (2005) 0.98
Native electrospray mass spectrometry reveals the nature and stoichiometry of pigments in the FMO photosynthetic antenna protein. Biochemistry (2011) 0.98
A single peptide-MHC complex positively selects a diverse and specific CD8 T cell repertoire. Science (2009) 0.97
A novel zinc finger structure in the large subunit of human general transcription factor TFIIE. J Biol Chem (2004) 0.97
Ionic-liquid matrices for quantitative analysis by MALDI-TOF mass spectrometry. J Am Soc Mass Spectrom (2004) 0.94
Specificity of peptide selection by antigen-presenting cells homozygous or heterozygous for expression of class II MHC molecules: The lack of competition. Proc Natl Acad Sci U S A (2003) 0.94
Purification, crystallization and initial X-ray diffraction study of human REV7 in complex with a REV3 fragment. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.94
First signature of islet beta-cell-derived naturally processed peptides selected by diabetogenic class II MHC molecules. J Immunol (2008) 0.94
Effects of non-occupational environmental exposure to pyrethroids on semen quality and sperm DNA integrity in Chinese men. Reprod Toxicol (2010) 0.92
Mass spectrometry footprinting reveals the structural rearrangements of cyanobacterial orange carotenoid protein upon light activation. Biochim Biophys Acta (2014) 0.92
Dynamic allostery in the ring protein TRAP. J Mol Biol (2007) 0.92
Characterization of the redox activity and disulfide bond formation in apurinic/apyrimidinic endonuclease. Biochemistry (2012) 0.92
Fission yeast Swi5-Sfr1 protein complex, an activator of Rad51 recombinase, forms an extremely elongated dogleg-shaped structure. J Biol Chem (2011) 0.92
Mass spectrometry-based carboxyl footprinting of proteins: method evaluation. Int J Mass Spectrom (2012) 0.91
Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum. Biochim Biophys Acta (2010) 0.91
Carboxyl-group footprinting maps the dimerization interface and phosphorylation-induced conformational changes of a membrane-associated tyrosine kinase. Mol Cell Proteomics (2011) 0.91
Pulsed hydrogen-deuterium exchange mass spectrometry probes conformational changes in amyloid beta (Aβ) peptide aggregation. Proc Natl Acad Sci U S A (2013) 0.91
Online, high-pressure digestion system for protein characterization by hydrogen/deuterium exchange and mass spectrometry. Anal Chem (2010) 0.90
Fast photochemical oxidation of proteins for comparing solvent-accessibility changes accompanying protein folding: data processing and application to barstar. Biochim Biophys Acta (2013) 0.90
Improved mass spectrometric characterization of protein glycosylation reveals unusual glycosylation of maize-derived bovine trypsin. Anal Chem (2010) 0.90
Identification of naturally processed peptides bound to the class I MHC molecule H-2Kd of normal and TAP-deficient cells. Eur J Immunol (2006) 0.90
Miniaturizing sample spots for matrix-assisted laser desorption/ionization mass spectrometry. Trends Analyt Chem (2009) 0.90
APCs present A beta(k)-derived peptides that are autoantigenic to type B T cells. J Immunol (2003) 0.89
Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment. Proteins (2008) 0.89
Inhibition of apurinic/apyrimidinic endonuclease I's redox activity revisited. Biochemistry (2013) 0.89
Interpretation and deconvolution of nanodisc native mass spectra. J Am Soc Mass Spectrom (2013) 0.89
H/D exchange centroid monitoring is insufficient to show differences in the behavior of protein states. J Am Soc Mass Spectrom (2013) 0.89
An improved fast photochemical oxidation of proteins (FPOP) platform for protein therapeutics. J Am Soc Mass Spectrom (2014) 0.89
Modeling data from titration, amide H/D exchange, and mass spectrometry to obtain protein-ligand binding constants. J Am Soc Mass Spectrom (2004) 0.88
Method revealing bacterial cell-wall architecture by time-dependent isotope labeling and quantitative liquid chromatography/mass spectrometry. Anal Chem (2009) 0.88
Gas-phase nazarov cyclization of protonated 2-methoxy and 2-hydroxychalcone: an example of intramolecular proton-transport catalysis. J Am Soc Mass Spectrom (2008) 0.88
Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling. Nucleic Acids Res (2012) 0.88
Metal-binding properties of human centrin-2 determined by micro-electrospray ionization mass spectrometry and UV spectroscopy. J Am Soc Mass Spectrom (2006) 0.88
Hydrogen-deuterium exchange mass spectrometry reveals the interaction of Fenna-Matthews-Olson protein and chlorosome CsmA protein. Biochemistry (2011) 0.87
Improving the signal intensity and sensitivity of MALDI mass spectrometry by using nanoliter spots deposited by induction-based fluidics. J Am Soc Mass Spectrom (2008) 0.87
Impact of limited oxidation on protein ion mobility and structure of importance to footprinting by radical probe mass spectrometry. Rapid Commun Mass Spectrom (2012) 0.87
Protonated nitro group as a gas-phase electrophile: experimental and theoretical study of the cyclization of o-nitrodiphenyl ethers, amines, and sulfides. J Am Soc Mass Spectrom (2007) 0.87