Published in BMC Evol Biol on January 31, 2008
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol (2011) 2.68
Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae. BMC Plant Biol (2010) 1.47
Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. J Mol Evol (2008) 1.45
Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae. J Mol Evol (2010) 1.41
The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza. PLoS One (2013) 1.38
Intraspecific inversions pose a challenge for the trnH-psbA plant DNA barcode. PLoS One (2010) 1.27
Chloroplast genome variation in upland and lowland switchgrass. PLoS One (2011) 1.18
A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons. PLoS One (2011) 1.12
Comparative chloroplast genomes of camellia species. PLoS One (2013) 1.10
Evolution of oil-producing trichomes in Sisyrinchium (Iridaceae): insights from the first comprehensive phylogenetic analysis of the genus. Ann Bot (2011) 1.10
The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol (2012) 1.10
Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis. Genome Biol Evol (2011) 1.09
The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution. PLoS One (2013) 1.08
The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng. Front Plant Sci (2015) 0.93
Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae. Genome Biol Evol (2015) 0.92
Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications. PLoS One (2013) 0.91
A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots. BMC Plant Biol (2014) 0.91
Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales. PLoS One (2013) 0.90
A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes. BMC Genomics (2014) 0.90
The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng. Front Plant Sci (2015) 0.90
Comparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applications. PLoS One (2014) 0.90
Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae. BMC Genomics (2013) 0.89
The plastid genome of Najas flexilis: adaptation to submersed environments is accompanied by the complete loss of the NDH complex in an aquatic angiosperm. PLoS One (2013) 0.88
Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species. Front Plant Sci (2016) 0.86
Are differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes. PLoS One (2015) 0.86
The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae). PLoS One (2016) 0.86
Comparative genome analysis and phylogenetic relationship of order Liliales insight from the complete plastid genome sequences of two Lilies (Lilium longiflorum and Alstroemeria aurea). PLoS One (2013) 0.83
A trnI_CAU triplication event in the complete chloroplast genome of Paris verticillata M.Bieb. (Melanthiaceae, Liliales). Genome Biol Evol (2014) 0.83
The complete chloroplast genome sequence of Morus mongolica and a comparative analysis within the Fabidae clade. Curr Genet (2015) 0.81
The Chloroplast Genome of Elaeagnus macrophylla and trnH Duplication Event in Elaeagnaceae. PLoS One (2015) 0.80
Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication. Appl Plant Sci (2016) 0.77
The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species. Front Plant Sci (2017) 0.75
The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots. Front Plant Sci (2017) 0.75
The complete chloroplast genome sequence of Gentiana lawrencei var. farreri (Gentianaceae) and comparative analysis with its congeneric species. PeerJ (2016) 0.75
Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae). Genome Biol Evol (2017) 0.75
Five Complete Chloroplast Genome Sequences from Diospyros: Genome Organization and Comparative Analysis. PLoS One (2016) 0.75
Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales. Genome Biol Evol (2016) 0.75
The complete chloroplast genome sequence of strawberry (Fragaria × ananassa Duch.) and comparison with related species of Rosaceae. PeerJ (2017) 0.75
Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae). Curr Genet (2016) 0.75
Phylogenomic relationship of feijoa (Acca sellowiana (O.Berg) Burret) with other Myrtaceae based on complete chloroplast genome sequences. Genetica (2017) 0.75
The Complete Chloroplast Genome of Chinese Bayberry (Morella rubra, Myricaceae): Implications for Understanding the Evolution of Fagales. Front Plant Sci (2017) 0.75
A Dynamic Tandem Repeat in Monocotyledons Inferred from a Comparative Analysis of Chloroplast Genomes in Melanthiaceae. Front Plant Sci (2017) 0.75
Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species. PLoS One (2017) 0.75
Completion of Eight Gynostemma BL. (Cucurbitaceae) Chloroplast Genomes: Characterization, Comparative Analysis, and Phylogenetic Relationships. Front Plant Sci (2017) 0.75
Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids. Genome Biol Evol (2017) 0.75
Chloroplast Genome Sequence of Clusterbean (Cyamopsis tetragonoloba L.): Genome Structure and Comparative Analysis. Genes (Basel) (2017) 0.75
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J (1986) 19.59
Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci U S A (1984) 18.39
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet (1989) 9.53
The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature (1999) 5.85
Comparative organization of chloroplast genomes. Annu Rev Genet (1985) 5.16
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature (1999) 5.14
Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biol (2006) 4.85
Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol (1995) 3.92
Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Syst Biol (2000) 3.65
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc Natl Acad Sci U S A (2007) 3.55
Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc Natl Acad Sci U S A (1992) 3.34
The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science (1999) 3.16
The chloroplast genome. Plant Mol Biol (1992) 3.03
The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks. Cell (2006) 2.92
Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res (1999) 2.63
Junctions of the large single copy region and the inverted repeats in Spinacia oleracea and Nicotiana debneyi chloroplast DNA: sequence of the genes for tRNAHis and the ribosomal proteins S19 and L2. Nucleic Acids Res (1984) 2.47
The chloroplast chromosomes in land plants. Annu Rev Cell Biol (1989) 2.27
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Mol Biol Evol (2005) 2.23
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Mol Biol Evol (2005) 2.18
The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol Biol Evol (2006) 2.15
Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Res (2004) 2.12
Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm. Mol Biol Evol (2003) 2.10
Inverted repeats in chloroplast DNA from higher plants. Proc Natl Acad Sci U S A (1979) 2.08
The root of the angiosperms revisited. Proc Natl Acad Sci U S A (2002) 1.93
Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes. Plant Mol Biol (2005) 1.83
Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. Mol Biol Evol (2005) 1.81
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. BMC Genomics (2007) 1.76
The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. Mol Biol Evol (2002) 1.73
Ebb and flow of the chloroplast inverted repeat. Mol Gen Genet (1996) 1.71
The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol Biol (2001) 1.68
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol (2006) 1.66
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms. BMC Plant Biol (2006) 1.66
Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions. Mol Biol Evol (2007) 1.64
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Mol Phylogenet Evol (2007) 1.50
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms. BMC Genomics (2006) 1.47
Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol (2006) 1.46
Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes. DNA Res (2004) 1.42
Complete structure of the chloroplast genome of a legume, Lotus japonicus. DNA Res (2000) 1.36
The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Mol Biol Evol (2004) 1.34
Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes. J Mol Evol (2006) 1.32
Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable euoenothera plastomes. Mol Gen Genet (2000) 1.31
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families. Proc Natl Acad Sci U S A (1987) 1.25
A transcription map of the chloroplast genome from rice (Oryza sativa). Curr Genet (1993) 1.25
Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics (2001) 1.22
Amborella not a "basal angiosperm"? Not so fast. Am J Bot (2004) 1.20
Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms. BMC Genomics (2006) 1.17
The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum. Mol Genet Genomics (2006) 1.09
The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. Plant Biotechnol J (2007) 1.08
Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement. DNA Res (2002) 1.06
The soybean chloroplast genome: complete sequence of the rps19 gene, including flanking parts containing exon 2 of rpl2 (upstream), but rpl22 (downstream). Nucleic Acids Res (1988) 0.95
Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants. Genes Genet Syst (2006) 0.93
A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue. Curr Genet (1993) 0.89
Sequence analysis of the junction of the large single copy region and the large inverted repeat in the petunia chloroplast genome. Curr Genet (1988) 0.83
Nucleotide sequence of the mustard chloroplast genes trnH and rps19'. Nucleic Acids Res (1990) 0.81
Expansion of the IR in the chloroplast genomes of buckwheat species is due to incorporation of an SSC sequence that could be mediated by an inversion. Curr Genet (1997) 0.80
Differential expression of the partially duplicated chloroplast S10 ribosomal protein operon. Mol Gen Genet (1993) 0.77
The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Mol Biol Evol (2005) 2.18
Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol Biol Evol (2007) 1.56
Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies. Genome Biol Evol (2010) 1.34
Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biol Evol (2011) 1.31
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. Mol Phylogenet Evol (2009) 1.23
Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA. Mol Biol Evol (2007) 1.10
The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol (2012) 1.10
Comparative chloroplast genomes of pinaceae: insights into the mechanism of diversified genomic organizations. Genome Biol Evol (2011) 1.07
Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water. Int J Syst Evol Microbiol (2003) 1.05
Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers. Plant Biotechnol J (2013) 0.99
Flower heating following anthesis and the evolution of gall midge pollination in Schisandraceae. Am J Bot (2010) 0.98
Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species. Plant Physiol (2007) 0.97
Identification of RNA editing sites in chloroplast transcripts of Phalaenopsis aphrodite and comparative analysis with those of other seed plants. Plant Cell Physiol (2006) 0.94
Chloroplast phylogenomics indicates that Ginkgo biloba is sister to cycads. Genome Biol Evol (2013) 0.94
The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids. Plant Sci (2012) 0.93
Variation in protein intake induces variation in spider silk expression. PLoS One (2012) 0.90
Opposite evolutionary effects between different alternative splicing patterns. Mol Biol Evol (2007) 0.89
Casual sex and concurrent sexual partnerships among young people from an Yi community with a high prevalence of HIV in China. Asian J Androl (2012) 0.88
Characterization of canine monocyte-derived dendritic cells with phenotypic and functional differentiation. Can J Vet Res (2007) 0.86
Sesamin inhibits macrophage-induced vascular endothelial growth factor and matrix metalloproteinase-9 expression and proangiogenic activity in breast cancer cells. Inflammation (2011) 0.85
Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes. Curr Genet (2010) 0.82
Biochemical characterization of an acid phosphatase from Thermus thermophilus. Biosci Biotechnol Biochem (2010) 0.81
Possible involvement of MAP kinase pathways in acquired metal-tolerance induced by heat in plants. Planta (2008) 0.79
Early signalling pathways in rice roots under vanadate stress. Plant Physiol Biochem (2009) 0.78
PaCDPK1, a gene encoding calcium-dependent protein kinase from orchid, Phalaenopsis amabilis, is induced by cold, wounding, and pathogen challenge. Plant Cell Rep (2007) 0.78
Tangy scent in Toona sinensis (Meliaceae) leaflets: isolation, functional characterization, and regulation of TsTPS1 and TsTPS2, two key terpene synthase genes in the biosynthesis of the scent compound. Curr Pharm Biotechnol (2012) 0.77
Expression of avian reovirus sigmaC protein in transgenic plants. J Virol Methods (2006) 0.75
A nano switch mechanism for the redox-responsive sulfotransferase. Biochem Pharmacol (2012) 0.75
Expression of avian reovirus minor capsid protein in plants. J Virol Methods (2011) 0.75
A self-reductive mesoporous CuO(x)/Fe/silicate nanocomposite as a highly active and stable catalyst for methanol reforming. Chem Commun (Camb) (2011) 0.75
Catalytic performance of plate-type Cu/Fe nanocomposites on ZnO nanorods for oxidative steam reforming of methanol. Chem Commun (Camb) (2010) 0.75
New electrocatalysts for unitized regenerative fuel cell: Pt-Ir alloy deposited on the proton exchange membrane surface by impregnation-reduction method. J Nanosci Nanotechnol (2010) 0.75
[Genetic structure of wild Macrobrachium nipponense populations in Taihu Lake based on microsatellite analysis]. Ying Yong Sheng Tai Xue Bao (2011) 0.75