Published in Int J Bioinform Res Appl on January 01, 2008
A phylogenetic and Markov model approach for the reconstruction of mutational pathways of drug resistance. Bioinformatics (2009) 0.82
Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A (2008) 3.45
Distinct transcriptional profiles characterize oral epithelium-microbiota interactions. Cell Microbiol (2005) 1.51
Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formation. J Med Microbiol (2004) 1.34
The identity, distribution, and impacts of non-native apple snails in the continental United States. BMC Evol Biol (2007) 1.26
Changing identities: tRNA duplication and remolding within animal mitochondrial genomes. Proc Natl Acad Sci U S A (2003) 1.14
The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. PLoS One (2012) 1.14
Degenerate primer design via clustering. Proc IEEE Comput Soc Bioinform Conf (2003) 1.02
Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response. Nucleic Acids Res (2013) 0.97
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. BMC Genomics (2010) 0.96
HIV-1 infection of monocytes is directly related to the success of HAART. Virology (2007) 0.92
MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies. Proc IEEE Comput Syst Bioinform Conf (2004) 0.87
Phylogenetic analysis of four nuclear protein-encoding genes largely corroborates the traditional classification of Bivalvia (Mollusca). Mol Phylogenet Evol (2012) 0.86
Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach. Bioinformatics (2007) 0.85
Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: procedure and application to the preclinical evaluation of chemopreventive agents. Mol Cancer Ther (2002) 0.85
An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. J Microbiol Methods (2005) 0.85
Microbial "social networks". BMC Genomics (2015) 0.83
Estimating support for protein-protein interaction data with applications to function prediction. Comput Syst Bioinformatics Conf (2008) 0.83
Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network. Bioinformatics (2006) 0.83
Better primer design for metagenomics applications by increasing taxonomic distinguishability. BMC Proc (2013) 0.82
Clustering genes using gene expression and text literature data. Proc IEEE Comput Syst Bioinform Conf (2005) 0.80
Detection of DNA-binding helix-turn-helix motifs in proteins using the pattern dictionary method. Methods Enzymol (2003) 0.80
Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung. Hum Genomics (2009) 0.80
Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients. Hum Genomics (2010) 0.79
IEM: an algorithm for iterative enhancement of motifs using comparative genomics data. Comput Syst Bioinformatics Conf (2007) 0.78
GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.76
Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains. BMC Syst Biol (2009) 0.75
Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.75