Published in BMC Proc on December 20, 2013
Microbial "social networks". BMC Genomics (2015) 0.83
A multiple antibiotic-resistant enterobacter cloacae strain isolated from a bioethanol fermentation facility. Microbes Environ (2014) 0.77
Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media. mSphere (2017) 0.75
Screening large-scale association study data: exploiting interactions using random forests. BMC Genet (2004) 5.76
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev (2004) 5.08
Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A (2008) 3.45
Glucose regulates transcription in yeast through a network of signaling pathways. Mol Syst Biol (2009) 2.03
Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. Mol Cell (2003) 1.98
Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci. Proc Natl Acad Sci U S A (2007) 1.95
Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger) rhizosphere: co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia. BMC Microbiol (2011) 1.82
Beta-lactam antibiotics: from antibiosis to resistance and bacteriology. APMIS (2010) 1.78
Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast. PLoS Biol (2004) 1.76
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic Acids Res (2012) 1.70
Inhibition of quorum sensing-controlled virulence factor production in Pseudomonas aeruginosa by South Florida plant extracts. Antimicrob Agents Chemother (2007) 1.53
Distinct transcriptional profiles characterize oral epithelium-microbiota interactions. Cell Microbiol (2005) 1.51
Pseudomonas aeruginosa AmpR is a global transcriptional factor that regulates expression of AmpC and PoxB beta-lactamases, proteases, quorum sensing, and other virulence factors. Antimicrob Agents Chemother (2005) 1.48
Anti-quorum sensing activity of medicinal plants in southern Florida. J Ethnopharmacol (2006) 1.37
Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formation. J Med Microbiol (2004) 1.34
The ATP-dependent ClpXP and Lon proteases regulate expression of the Yersinia pestis type III secretion system via regulated proteolysis of YmoA, a small histone-like protein. Mol Microbiol (2004) 1.22
Mining protein sequences for motifs. J Comput Biol (2002) 1.15
Pseudomonas aeruginosa alginate is refractory to Th1 immune response and impedes host immune clearance in a mouse model of acute lung infection. J Med Microbiol (2003) 1.14
The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. PLoS One (2012) 1.14
Characterization of poxB, a chromosomal-encoded Pseudomonas aeruginosa oxacillinase. Gene (2005) 1.06
Pseudomonas aeruginosa β-lactamase induction requires two permeases, AmpG and AmpP. BMC Microbiol (2010) 1.06
Chromobacterium haemolyticum sp. nov., a strongly haemolytic species. Int J Syst Evol Microbiol (2008) 1.04
Degenerate primer design via clustering. Proc IEEE Comput Soc Bioinform Conf (2003) 1.02
Paper based point-of-care testing disc for multiplex whole cell bacteria analysis. Biosens Bioelectron (2011) 1.02
Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response. Nucleic Acids Res (2013) 0.97
Co-regulation of {beta}-lactam resistance, alginate production and quorum sensing in Pseudomonas aeruginosa. J Med Microbiol (2010) 0.95
First reported infections caused by three newly described genera in the family Xanthomonadaceae. J Clin Microbiol (2006) 0.94
Direct electrical measurements on single-molecule genomic DNA using single-walled carbon nanotubes. Nano Lett (2007) 0.93
A k2A-positive Klebsiella pneumoniae causes liver and brain abscess in a Saint Kitt's man. Int J Med Sci (2009) 0.90
An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices. FEMS Microbiol Ecol (2006) 0.89
Comparative transcriptome analyses of Pseudomonas aeruginosa. Hum Genomics (2009) 0.87
MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies. Proc IEEE Comput Syst Bioinform Conf (2004) 0.87
Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: procedure and application to the preclinical evaluation of chemopreventive agents. Mol Cancer Ther (2002) 0.85
An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. J Microbiol Methods (2005) 0.85
Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach. Bioinformatics (2007) 0.85
Attenuation of Pseudomonas aeruginosa virulence by medicinal plants in a Caenorhabditis elegans model system. J Med Microbiol (2008) 0.84
Simple electrospray mass spectrometry detection of acylhomoserine lactones. Luminescence (2006) 0.84
Microbial "social networks". BMC Genomics (2015) 0.83
Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network. Bioinformatics (2006) 0.83
Estimating support for protein-protein interaction data with applications to function prediction. Comput Syst Bioinformatics Conf (2008) 0.83
Microbial metagenome profiling using amplicon length heterogeneity-polymerase chain reaction proves more effective than elemental analysis in discriminating soil specimens. J Forensic Sci (2006) 0.82
Role of Pseudomonas aeruginosa AmpR on β-lactam and non-β-lactam transient cross-resistance upon pre-exposure to subinhibitory concentrations of antibiotics. J Med Microbiol (2014) 0.81
Neurotrophic and neuroimmune responses to early-life Pseudomonas aeruginosa infection in rat lungs. Am J Physiol Lung Cell Mol Physiol (2010) 0.81
Gerimax ginseng regulates both humoral and cellular immunity during chronic Pseudomonas aeruginosa lung infection. J Altern Complement Med (2002) 0.81
A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and algT/U activity results in the loss of alginate production. Gene (2011) 0.81
Clustering genes using gene expression and text literature data. Proc IEEE Comput Syst Bioinform Conf (2005) 0.80
Detection of DNA-binding helix-turn-helix motifs in proteins using the pattern dictionary method. Methods Enzymol (2003) 0.80
Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung. Hum Genomics (2009) 0.80
Substituted lactam and cyclic azahemiacetals modulate Pseudomonas aeruginosa quorum sensing. Bioorg Med Chem (2011) 0.79
Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients. Hum Genomics (2010) 0.79
IEM: an algorithm for iterative enhancement of motifs using comparative genomics data. Comput Syst Bioinformatics Conf (2007) 0.78
Impact of higher alginate expression on deposition of Pseudomonas aeruginosa in radial stagnation point flow and reverse osmosis systems. Environ Sci Technol (2009) 0.78
The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. Int J Bioinform Res Appl (2008) 0.77
GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.76
Hemodialysis graft with blind loop inflow segment treated with stent placement. Semin Dial (2008) 0.75
Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains. BMC Syst Biol (2009) 0.75
Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.75
The effect of environmental factors on the electrical conductivity of a single oligo-DNA molecule measured using single-walled carbon nanotube nanoelectrodes. Nanotechnology (2008) 0.75
Corrigendum: Muropeptides in Pseudomonas aeruginosa and their Role as Elicitors of β-Lactam-Antibiotic Resistance. Angew Chem Int Ed Engl (2016) 0.75