Published in Virology on March 04, 2008
Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev (2011) 1.78
Transfer RNA genes in pieces. EMBO Rep (2008) 1.35
Microviridae goes temperate: microvirus-related proviruses reside in the genomes of Bacteroidetes. PLoS One (2011) 1.18
Discovery of permuted and recently split transfer RNAs in Archaea. Genome Biol (2011) 1.10
The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. J Virol (2009) 1.07
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res (2010) 1.04
Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One (2013) 1.01
Unification of the globally distributed spindle-shaped viruses of the Archaea. J Virol (2013) 0.99
Provirus induction in hyperthermophilic archaea: characterization of Aeropyrum pernix spindle-shaped virus 1 and Aeropyrum pernix ovoid virus 1. J Bacteriol (2011) 0.96
A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2. Nucleic Acids Res (2014) 0.92
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes. Extremophiles (2014) 0.92
How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions. Extremophiles (2013) 0.90
Complete genome sequence of Pyrobaculum oguniense. Stand Genomic Sci (2012) 0.87
Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes. Biochimie (2015) 0.85
Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements. J Virol (2016) 0.83
Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop. Nucleic Acids Res (2011) 0.82
Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1. Appl Environ Microbiol (2013) 0.81
Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis. Extremophiles (2012) 0.80
Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles. Genome Announc (2014) 0.78
HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae. Viruses (2017) 0.78
Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification. J Virol (2017) 0.76
Crystal structure of PAV1-137: a protein from the virus PAV1 that infects Pyrococcus abyssi. Archaea (2013) 0.75
Flipping chromosomes in deep-sea archaea. PLoS Genet (2017) 0.75
MetSV, a novel archaeal lytic virus targeting Methanosarcina strains. J Virol (2017) 0.75
Does common architecture reveal a viral lineage spanning all three domains of life? Mol Cell (2004) 2.52
Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. Mol Cell (2002) 2.47
Insights into assembly from structural analysis of bacteriophage PRD1. Nature (2004) 2.47
Virus evolution: how far does the double beta-barrel viral lineage extend? Nat Rev Microbiol (2008) 2.11
qiRNA is a new type of small interfering RNA induced by DNA damage. Nature (2009) 2.06
The structure of an RNAi polymerase links RNA silencing and transcription. PLoS Biol (2006) 1.96
Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell (2004) 1.86
Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev (2011) 1.78
Mechanism of membranous tunnelling nanotube formation in viral genome delivery. PLoS Biol (2013) 1.58
Structure unifies the viral universe. Annu Rev Biochem (2012) 1.58
Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure (2006) 1.56
Initiation of viral RNA-dependent RNA polymerization. J Gen Virol (2004) 1.54
Membrane structure and interactions with protein and DNA in bacteriophage PRD1. Nature (2004) 1.53
The receptor binding protein P2 of PRD1, a virus targeting antibiotic-resistant bacteria, has a novel fold suggesting multiple functions. Structure (2003) 1.52
Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Mol Cell (2008) 1.37
Order to the viral universe. J Virol (2010) 1.30
Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid. Nat Struct Biol (2002) 1.27
Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci U S A (2008) 1.25
The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure (2004) 1.25
Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol Biol (2009) 1.23
Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly. Curr Opin Virol (2011) 1.20
An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol (2009) 1.20
Sequential model of phage PRD1 DNA delivery: active involvement of the viral membrane. Mol Microbiol (2002) 1.19
Global network of specific virus-host interactions in hypersaline environments. Environ Microbiol (2011) 1.18
Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage. Virology (2003) 1.17
The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex. J Virol (2003) 1.17
The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state. J Bacteriol (2003) 1.15
SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake. Virology (2005) 1.15
Common principles in viral entry. Annu Rev Microbiol (2002) 1.14
Global changes in cellular gene expression during bacteriophage PRD1 infection. J Virol (2006) 1.13
In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses. J Mol Biol (2005) 1.13
The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes. Nat Struct Mol Biol (2004) 1.12
Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J Mol Biol (2010) 1.12
Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses. Biol Direct (2014) 1.10
RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. J Biol Chem (2003) 1.10
The DNA/RNA-dependent RNA polymerase QDE-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. PLoS Biol (2010) 1.09
Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. J Mol Biol (2003) 1.07
The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. J Virol (2009) 1.07
The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol Biol Evol (2010) 1.07
Virus-host interactions in environments with a wide range of ionic strengths. Environ Microbiol Rep (2009) 1.07
The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution. Acta Crystallogr D Biol Crystallogr (2001) 1.06
Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story. Proc Natl Acad Sci U S A (2013) 1.05
Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription. J Virol (2002) 1.04
Bacteriophage phi 6 RNA-dependent RNA polymerase: molecular details of initiating nucleic acid synthesis without primer. J Biol Chem (2002) 1.04
New, closely related haloarchaeal viral elements with different nucleic Acid types. J Virol (2010) 1.03
Structural explanation for the role of Mn2+ in the activity of phi6 RNA-dependent RNA polymerase. Nucleic Acids Res (2008) 1.02
Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage phi6 RNA-dependent RNA polymerase. RNA (2007) 1.01
The unique vertex of bacterial virus PRD1 is connected to the viral internal membrane. J Virol (2003) 1.00
Identification and mutational analysis of bacteriophage PRD1 holin protein P35. J Bacteriol (2003) 1.00
Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. BMC Genomics (2007) 1.00
Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol (2002) 1.00
Unification of the globally distributed spindle-shaped viruses of the Archaea. J Virol (2013) 0.99
A snapshot of viral evolution from genome analysis of the tectiviridae family. J Mol Biol (2005) 0.99
Evolutionary potential of an RNA virus. J Virol (2004) 0.98
Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation. J Virol (2011) 0.98
Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid core. J Virol (2002) 0.98
The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Mol Cell (2005) 0.98
Structural basis of mechanochemical coupling in a hexameric molecular motor. J Biol Chem (2007) 0.98
Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1. Mol Microbiol (2008) 0.97
Back-priming mode of phi6 RNA-dependent RNA polymerase. J Gen Virol (2005) 0.97
The origin of phospholipids of the enveloped bacteriophage phi6. Virology (2004) 0.97
Temperature requirements for initiation of RNA-dependent RNA polymerization. Virology (2003) 0.96
The lytic enzyme of bacteriophage PRD1 is associated with the viral membrane. J Bacteriol (2002) 0.96
Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea. J Virol (2012) 0.96
Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5' phosphorylation of RNA molecules. J Immunol (2011) 0.96
Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. J Virol (2012) 0.95
Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. J Biol Chem (2003) 0.95
Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6. J Virol (2012) 0.94
Does the evolution of viral polymerases reflect the origin and evolution of viruses? Nat Rev Microbiol (2009) 0.94
Quantitative dissociation of archaeal virus SH1 reveals distinct capsid proteins and a lipid core. Virology (2006) 0.93
Plate tectonics of virus shell assembly and reorganization in phage φ8, a distant relative of mammalian reoviruses. Structure (2013) 0.93
Phospholipid molecular species profiles of tectiviruses infecting Gram-negative and Gram-positive hosts. Virology (2004) 0.92
Roles of the minor capsid protein P7 in the assembly and replication of double-stranded RNA bacteriophage phi6. J Mol Biol (2008) 0.92
The Holin protein of bacteriophage PRD1 forms a pore for small-molecule and endolysin translocation. J Bacteriol (2005) 0.92
Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology (2012) 0.91
Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage phi6 RNA-dependent RNA polymerase. J Virol (2008) 0.90
Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. Environ Microbiol (2012) 0.90
The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment. PLoS Pathog (2011) 0.90
Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1. Proc Natl Acad Sci U S A (2012) 0.89
Gene silencing pathway RNA-dependent RNA polymerase of Neurospora crassa: yeast expression and crystallization of selenomethionated QDE-1 protein. J Struct Biol (2005) 0.89
Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6. J Virol (2007) 0.89
Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription. Nucleic Acids Res (2004) 0.89
Assembly of double-stranded RNA bacteriophages. Adv Virus Res (2005) 0.89
Insights into the pre-initiation events of bacteriophage phi 6 RNA-dependent RNA polymerase: towards the assembly of a productive binary complex. Nucleic Acids Res (2009) 0.89
Assembly of large icosahedral double-stranded RNA viruses. Adv Exp Med Biol (2012) 0.88
Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage phi 12 packaging motor. Acta Crystallogr D Biol Crystallogr (2004) 0.88
Complete genome sequence of the broad host range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with Alloleviviruses. J Virol (2006) 0.88
Snapshot of haloarchaeal tailed virus genomes. RNA Biol (2013) 0.87
The linear double-stranded DNA of phage Bam35 enters lysogenic host cells, but the late phage functions are suppressed. J Bacteriol (2005) 0.87
Penetration of membrane-containing double-stranded-DNA bacteriophage PM2 into Pseudoalteromonas hosts. J Bacteriol (2004) 0.87
Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection. J Virol (2007) 0.87
Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome. J Mol Biol (2009) 0.87
Probing the ability of the coat and vertex protein of the membrane-containing bacteriophage PRD1 to display a meningococcal epitope. Virology (2003) 0.87
Lipids of archaeal viruses. Archaea (2012) 0.86
The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein. Acta Crystallogr D Biol Crystallogr (2011) 0.86
Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages. J Virol (2003) 0.86
Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Res (2008) 0.86
Insights into head-tailed viruses infecting extremely halophilic archaea. J Virol (2013) 0.86
A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage. Mol Microbiol (2007) 0.85
The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes. J Virol (2009) 0.85