Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6.

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Published in J Virol on January 03, 2007

Authors

Nelli J Karhu1, Gabija Ziedaite, Dennis H Bamford, Jaana K H Bamford

Author Affiliations

1: Department of Biological and Environmental Science, Institute of Biotechnology, University of Helsinki, Biocenter 2, Viikinkaari 5, FIN-00014 University of Helsinki, Finland.

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Protein-priming of DNA replication. Annu Rev Biochem (1991) 3.49

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Isolation of nonsense suppressor mutants in Pseudomonas. J Bacteriol (1976) 3.07

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Isolation of nonsense mutants of lipid-containing bacteriophage PRD1. J Virol (1982) 1.78

Quantitation of the adsorption and penetration stages of bacteriophage phi 6 infection. Virology (1989) 1.77

Structure determination of the head-tail connector of bacteriophage phi29. Acta Crystallogr D Biol Crystallogr (2001) 1.74

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Steps in the stabilization of newly packaged DNA during phage P22 morphogenesis. J Mol Biol (1984) 1.51

Electron microscopy of cells infected with nonsense mutants of bacteriophage phi 6. Virology (1980) 1.51

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Lipid-containing bacteriophage PR4: structure and life cycle. J Gen Virol (1979) 1.35

RNA dependence of the bacteriophage phi 29 DNA packaging ATPase. J Mol Biol (1990) 1.34

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Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid. Nat Struct Biol (2002) 1.27

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Improved methods for determination of rotational symmetries in macromolecules. Ultramicroscopy (1995) 1.26

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